View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7060_high_9 (Length: 291)

Name: NF7060_high_9
Description: NF7060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7060_high_9
NF7060_high_9
[»] chr7 (3 HSPs)
chr7 (69-164)||(46028274-46028369)
chr7 (70-155)||(19513534-19513620)
chr7 (217-269)||(46028422-46028474)
[»] chr8 (2 HSPs)
chr8 (69-164)||(42032899-42032992)
chr8 (217-267)||(42032795-42032845)
[»] chr1 (2 HSPs)
chr1 (100-164)||(52372835-52372900)
chr1 (217-267)||(52372732-52372782)


Alignment Details
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 69 - 164
Target Start/End: Original strand, 46028274 - 46028369
Alignment:
Q  69 tggcccccggaaagggccccgtcacaaccagcacacccagcaaggaaaagcgcaaggagagacccaagaagacaggctggataggtagaggcaaag 164  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  46028274 tggcccccggaaagggttccgtcacaaccagcacacccagcaaggaaaagcgcaaggagagacccaagaagacaagttggataggtagaggcaaag 46028369  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 155
Target Start/End: Complemental strand, 19513620 - 19513534
Alignment:
Q  70 ggcccccggaaagggccccgtcacaaccagcacacccagcaaggaaaa-gcgcaaggagagacccaagaagacaggctggataggta 155  Q
    ||||||| ||||||| |||| || | | ||| |||||| ||||||||| |||||||||||||||||||||||||||  |||||||||    
T  19513620 ggcccccagaaagggacccgccataccaagcgcacccaacaaggaaaaagcgcaaggagagacccaagaagacaggtcggataggta 19513534  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 46028422 - 46028474
Alignment:
Q  217 taccgttgccaacaaaggacgggctgcacctcccacccataaaaggagcagaa 269  Q
    ||||||||||||||||| ||||||||||||||||||  |||||||||| ||||    
T  46028422 taccgttgccaacaaagaacgggctgcacctcccacttataaaaggagtagaa 46028474  T

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Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 69 - 164
Target Start/End: Complemental strand, 42032992 - 42032899
Alignment:
Q  69 tggcccccggaaagggccccgtcacaaccagcacacccagcaaggaaaagcgcaaggagagacccaagaagacaggctggataggtagaggcaaag 164  Q
    ||||||||| ||||||||||  |||||||||| |||||| ||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||    
T  42032992 tggcccccgaaaagggccccaccacaaccagcgcacccaacaaggaaaagcgcaaggagaga--caagaagacaggctggaaaggtagaggcaaag 42032899  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 42032845 - 42032795
Alignment:
Q  217 taccgttgccaacaaaggacgggctgcacctcccacccataaaaggagcag 267  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  42032845 taccgttgccaacaaaggacgggttgcacctcccactcataaaaggagcag 42032795  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 52372900 - 52372835
Alignment:
Q  100 cacacccagcaaggaaaa-gcgcaaggagagacccaagaagacaggctggataggtagaggcaaag 164  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||    
T  52372900 cacatccagcaaggaaaaagcgcaaggagagacccaagaagacaggccggagaggtagaggcaaag 52372835  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 52372782 - 52372732
Alignment:
Q  217 taccgttgccaacaaaggacgggctgcacctcccacccataaaaggagcag 267  Q
    ||||| ||||||||||||| ||| |||||||||||| ||||||| ||||||    
T  52372782 taccgctgccaacaaaggatgggttgcacctcccactcataaaaagagcag 52372732  T

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