View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7060_low_1 (Length: 539)
Name: NF7060_low_1
Description: NF7060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7060_low_1 |
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| [»] scaffold0279 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 499; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 18 - 528
Target Start/End: Original strand, 27526322 - 27526832
Alignment:
| Q |
18 |
gaaactttatttgtttgttaggggacaaatgtatccagctttatggggtgctaaagtgggaaatagttggagaactactaatgacataaatgattcatgg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27526322 |
gaaactttatttgtttgttaggggacaaatgtatccagctttatggggtgctaaagtgggaaatagttggagaactactaatgacataaatgattcatgg |
27526421 |
T |
|
| Q |
118 |
gaaaggtaaaaaccatgcactcaatttgttggtactagtagttttttgaaatgtaaacaatttgttactaaaattgaacaattgtgtatccttagctact |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
27526422 |
gaaaggtaaaaaccatgcactcaatttgttggtactagtagttttttgaaatttaaacaatttgttactaaaattgaactattgtgtatccttagctact |
27526521 |
T |
|
| Q |
218 |
agctaataaaactaacttgttttatgcagtatgatttcgagggccgacctgaatgaagtttatgccgagcatgcaagacctggtggctggaatggttaga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27526522 |
agctaataaaactaacttgttttatgcagtatgatttcgagggccgacctgaatgaagtttatgccgagcatgcaagacctggtggctggaatggttaga |
27526621 |
T |
|
| Q |
318 |
acttcatttgtttaacaattttttgtgaaagaattgagtttgcatcttgatttcatgatataatttatgactcaagatattcattaaacattttaactca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27526622 |
acttcatttgtttaacaattttttgtgaaagaattgagtttgcatcttgatttcatgatataatttatgactcaagatattcattaaatattttaactca |
27526721 |
T |
|
| Q |
418 |
acagatcctgacatgcttgaggttggaaatggagggatgacaaaaaatgaatatattgttcacttcagtttgtgggccatttcaaaggttctatcattct |
517 |
Q |
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| T |
27526722 |
acagatcctgacatgcttgaggttggaaatggagggatgacaaaaaatgaatatattgttcacttcagtttgtgggccatttcaaaggttctatcattct |
27526821 |
T |
|
| Q |
518 |
cttgtcttcat |
528 |
Q |
| |
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||||||||||| |
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| T |
27526822 |
cttgtcttcat |
27526832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 518
Target Start/End: Original strand, 27531976 - 27532476
Alignment:
| Q |
19 |
aaactttatttgtttgttaggggacaaatgtatccagctttatggggtgctaaagtgggaaatagttggagaactactaatgacataaatgattcatggg |
118 |
Q |
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||||||| |||||||||||||||| | ||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||| |
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| T |
27531976 |
aaactttctttgtttgttaggggagatatgcatccagctaaatggggtgctaaagtgggaaatagttggagaactactggtgacataactgatacatggg |
27532075 |
T |
|
| Q |
119 |
aaaggtaaaaaccatgcactcaatttgttggtactagtagttttttgaaatgtaaacaatttg-----ttactaaaattgaacaattgtgtatcct---- |
209 |
Q |
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||||||||||||||||||||||||| ||| ||||||||||||||||| || |||||||| ||||||||| ||||||||| |
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| T |
27532076 |
aaaggtaaaaaccatgcactcaattggtt-------------ttttgaaatgtaaacaagttcgatatttactaaagttgaacaatcgtgtatcctacta |
27532162 |
T |
|
| Q |
210 |
----tagctactagctaataaaactaacttgttttatgcagtatgatttcgagggccgacctgaatgaagtttatgccgagcatgcaagacctggtggct |
305 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||| |||||||||||||||| |||| ||||||||||||||| | |
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| T |
27532163 |
tccttagctactagctaataaaattaacttgttttatgcagtatgatttcaagggctgacatgaatgaagtttatgctgagcttgcaagacctggtggtt |
27532262 |
T |
|
| Q |
306 |
ggaatggttagaacttcatttgtttaacaattttttgtgaaaga-attgagtttgcatcttgatttcatgatataatttatgactcaagatattcattaa |
404 |
Q |
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||||||||||||| |||||||||||||||| ||||||||||||| || |||||||||| |||||||||||||| ||||||||| || | |||||||||| |
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| T |
27532263 |
ggaatggttagaatttcatttgtttaacaactttttgtgaaagacatcgagtttgcatattgatttcatgatacaatttatgagtcgatttattcattaa |
27532362 |
T |
|
| Q |
405 |
acattttaactcaacagatcctgacatgcttgaggttggaaatggagggatgacaaaaaatgaatatattgttcacttcagtttgtgggccatttcaaag |
504 |
Q |
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||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
27532363 |
acattctaactcgacagatcctgatatgcttgaggttggaaatggagggatgacaaaaaatgagtatatcgttcacttcagtttgtgggccatttcaaag |
27532462 |
T |
|
| Q |
505 |
gttctatcattctc |
518 |
Q |
| |
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|||| || |||||| |
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| T |
27532463 |
gttcgattattctc |
27532476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0279 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0279
Description:
Target: scaffold0279; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 427 - 528
Target Start/End: Original strand, 20606 - 20712
Alignment:
| Q |
427 |
gacatgcttgagg-ttggaaatggagggatgac--aaaaaatgaatatattgttca-cttcagtttgtgggcc-atttcaaaggttctatcattctcttg |
521 |
Q |
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||||||||||||| |||||||||| ||| ||| |||||| | |||||||||||| |||||||||||||||| || ||||||||||||||||||||| | |
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| T |
20606 |
gacatgcttgagggttggaaatggggggcagaccaaaaaaagggatatattgttcaacttcagtttgtgggcccatgtcaaaggttctatcattctctgg |
20705 |
T |
|
| Q |
522 |
tcttcat |
528 |
Q |
| |
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||||||| |
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| T |
20706 |
tcttcat |
20712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 460
Target Start/End: Original strand, 24883685 - 24883727
Alignment:
| Q |
418 |
acagatcctgacatgcttgaggttggaaatggagggatgacaa |
460 |
Q |
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| T |
24883685 |
acagatcctgacatgcttgaagttggaaatggaggtatgacaa |
24883727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 420 - 460
Target Start/End: Complemental strand, 32590259 - 32590219
Alignment:
| Q |
420 |
agatcctgacatgcttgaggttggaaatggagggatgacaa |
460 |
Q |
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||||||||| |||||||| |||||||||||||| ||||||| |
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| T |
32590259 |
agatcctgatatgcttgaagttggaaatggaggcatgacaa |
32590219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 420 - 460
Target Start/End: Complemental strand, 32600707 - 32600667
Alignment:
| Q |
420 |
agatcctgacatgcttgaggttggaaatggagggatgacaa |
460 |
Q |
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||||||||| |||||||| |||||||||||||| ||||||| |
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| T |
32600707 |
agatcctgatatgcttgaagttggaaatggaggcatgacaa |
32600667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 420 - 458
Target Start/End: Complemental strand, 34593853 - 34593815
Alignment:
| Q |
420 |
agatcctgacatgcttgaggttggaaatggagggatgac |
458 |
Q |
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|||||||||||||||||||||||| |||||||| ||||| |
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| T |
34593853 |
agatcctgacatgcttgaggttgggaatggaggcatgac |
34593815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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