View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7060_low_11 (Length: 296)

Name: NF7060_low_11
Description: NF7060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7060_low_11
NF7060_low_11
[»] chr2 (1 HSPs)
chr2 (20-278)||(11169610-11169867)
[»] chr4 (2 HSPs)
chr4 (14-238)||(29546325-29546546)
chr4 (116-239)||(25708067-25708191)
[»] chr7 (2 HSPs)
chr7 (69-280)||(21839446-21839652)
chr7 (168-244)||(31720217-31720293)
[»] chr6 (5 HSPs)
chr6 (14-244)||(24954717-24954944)
chr6 (136-244)||(15107079-15107187)
chr6 (168-244)||(20757298-20757374)
chr6 (176-244)||(17111450-17111518)
chr6 (168-244)||(17111618-17111694)
[»] chr3 (3 HSPs)
chr3 (168-244)||(3440342-3440418)
chr3 (172-244)||(26270074-26270146)
chr3 (139-239)||(30406294-30406395)
[»] chr5 (1 HSPs)
chr5 (168-244)||(19847814-19847890)
[»] chr1 (1 HSPs)
chr1 (169-239)||(12656882-12656952)


Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 11169867 - 11169610
Alignment:
Q  20 gtggttgtggattgttggaaacatagaatcgtttatttttggattgtagttttttagtacaatttggcaacttgtttgcaattggctagccaggagttca 119  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11169867 gtggctgtggattgttggaaacatagaatcgtttatttttggattgtagttttttagtacaatttggcaacttgtttgcaattggctagctaggagttca 11169768  T
Q  120 ttcagcgaattcttctattattgcggatcattttttataatttggtggctcttcaggttatgcaaaatcaatgagctctttcatgttattgagttggttt 219  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  11169767 ttcagcgaattcatctattattgcggatcat-ttttataatttggtggctcttcaggttatgcaaaatcaatgagctctttcatgttattgagttgattt 11169669  T
Q  220 gctagttcttgggtgatttgaaaggnnnnnnntgacatgatttctcgtggtaaacaaaa 278  Q
    |||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  11169668 gctagttcttgggtgatttgaaaggaaaaaaatgacatgatttctcgtggtaaacaaaa 11169610  T

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Target: chr4 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 14 - 238
Target Start/End: Original strand, 29546325 - 29546546
Alignment:
Q  14 gtgttggtggttgtggattgttggaaacatagaatcgtttatttttggattg-tagttttttagtacaatttggcaacttgtttgcaattggctagccag 112  Q
    ||||||||||||||| |||||||||||||  ||||| |||||||||||||||  | |||||| || ||||||||||||||||| | ||||||||    ||    
T  29546325 gtgttggtggttgtgtattgttggaaacaacgaatcatttatttttggattgcaatttttttggttcaatttggcaacttgttcgaaattggct----ag 29546420  T
Q  113 gagttcattcagcgaattcttctattattgcggatcattttttataatttggtggctcttcaggttatgcaaaatcaatgagctctttcatgttattgag 212  Q
    |||||||||||||| || | |||||||||||||||||||||||| | ||||  || || || | |||||| ||||||||  | ||||||||||||||||     
T  29546421 gagttcattcagcggatccgtctattattgcggatcattttttacagtttgacggttcatcggattatgctaaatcaatacgttctttcatgttattgat 29546520  T
Q  213 ttggtttgctagttcttgggtgattt 238  Q
     ||||||||||||| |||||||||||    
T  29546521 ctggtttgctagtttttgggtgattt 29546546  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 239
Target Start/End: Original strand, 25708067 - 25708191
Alignment:
Q  116 ttcattcagcgaattcttctattattgcggatcatttttt-ataatttggtggctcttcaggttatgcaaaatcaatgagctctttcatgttattgagtt 214  Q
    ||||||| |||||| | |||||| |||||||||||||||| |   ||||  ||||||||| |||| ||||||||||  || ||||||||||| | ||  |    
T  25708067 ttcattcggcgaatccatctattcttgcggatcatttttttaccgtttgacggctcttcaagttacgcaaaatcaagaagttctttcatgttttagatct 25708166  T
Q  215 ggtttgctagttcttgggtgatttg 239  Q
     ||||||||||||||||||||||||    
T  25708167 agtttgctagttcttgggtgatttg 25708191  T

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Target: chr7 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 69 - 280
Target Start/End: Complemental strand, 21839652 - 21839446
Alignment:
Q  69 ttttttagtacaatttggcaacttgtttgcaattggctagccaggagttcattcagcgaattcttctattattgcggatcattttttataatttggtggc 168  Q
    |||||| | |||||||||||||||||| | ||||||||||    |||||||||||| | || | |||||| ||||||||||| ||||| |  ||||  ||    
T  21839652 ttttttggaacaatttggcaacttgttcgtaattggctag----gagttcattcagtggatccatctattcttgcggatcatattttacagcttggcagc 21839557  T
Q  169 tcttcaggttatgcaaaatcaatgagctctttcatgttattgagttggtttgctagttcttgggtgatttgaaaggnnnnnnntgacatgatttctcgtg 268  Q
     | ||||||||||||||||||| ||||||||||||||| ||||  ||||||||||||||||| |||||||  ||||       ||||||||||  |||||    
T  21839556 -catcaggttatgcaaaatcaaggagctctttcatgtttttgatctggtttgctagttcttgagtgatttagaaggaaagaaatgacatgattattcgtg 21839458  T
Q  269 gtaaacaaaatt 280  Q
    | ||||||||||    
T  21839457 gcaaacaaaatt 21839446  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 244
Target Start/End: Original strand, 31720217 - 31720293
Alignment:
Q  168 ctcttcaggttatgcaaaatcaatgagctctttcatgttattgagttggtttgctagttcttgggtgatttgaaagg 244  Q
    ||||||| ||||||||| ||||| | |||| |||||| | ||||  |||||||| |||| |||||||||||||||||    
T  31720217 ctcttcatgttatgcaacatcaaggcgctcattcatgattttgatatggtttgcaagttattgggtgatttgaaagg 31720293  T

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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 24954944 - 24954717
Alignment:
Q  14 gtgttggtggttgtggattgttggaaacatagaatcgtttatttttggattgtagt-tttttagtacaatttggcaacttgtttgcaattggctagccag 112  Q
    |||||||||||||||||||| |||||| | ||||||  | ||||||||| || |   ||||| ||||| |||| ||||||||| | | ||||||||        
T  24954944 gtgttggtggttgtggattgatggaaatagagaatcactaatttttggagtgcatcgtttttggtacactttgacaacttgttcgaagttggctag---- 24954849  T
Q  113 gagttcattcagcgaattcttctattattgcggatcattttttataatttggtggctcttcaggttatgcaaaatcaatgagctctttcatgttattgag 212  Q
    || |||||| || | || | ||||||||| ||||||||||||   ||||||   | |||||||| ||| |||||| ||  | |||||||||||||||||     
T  24954848 gatttcatttagtggatccatctattattacggatcatttttctcaatttgacagttcttcaggatatacaaaattaagaacctctttcatgttattgat 24954749  T
Q  213 ttggtttgctagttcttgggtgatttgaaagg 244  Q
    ||||||||||| ||||||||||||||| ||||    
T  24954748 ttggtttgctacttcttgggtgatttggaagg 24954717  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 244
Target Start/End: Original strand, 15107079 - 15107187
Alignment:
Q  136 attattgcggatcattttttataatttggtggctcttcaggttatgcaaaatcaatgagctctttcatgttattgagttggtttgctagttcttgggtga 235  Q
    |||||||| ||||  |||||| |||||||  |||  || |||||||| ||||||| | |||||||||||||||||| ||||||||| ||||||||| |||    
T  15107079 attattgcagatcgatttttacaatttggcagcttatctggttatgctaaatcaaggtgctctttcatgttattgatttggtttgcgagttcttggatga 15107178  T
Q  236 tttgaaagg 244  Q
    |||| ||||    
T  15107179 tttggaagg 15107187  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 244
Target Start/End: Complemental strand, 20757374 - 20757298
Alignment:
Q  168 ctcttcaggttatgcaaaatcaatgagctctttcatgttattgagttggtttgctagttcttgggtgatttgaaagg 244  Q
    ||||| |||||||||| |||||||| | ||||||||||| ||||  ||||||| |||||||||||||||||| ||||    
T  20757374 ctctttaggttatgcataatcaatgtgttctttcatgtttttgatctggtttgatagttcttgggtgatttggaagg 20757298  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 17111450 - 17111518
Alignment:
Q  176 gttatgcaaaatcaatgagctctttcatgttattgagttggtttgctagttcttgggtgatttgaaagg 244  Q
    ||||| ||||||||| ||||||||||||||| ||||  | |||||| ||||||||||||||||| ||||    
T  17111450 gttattcaaaatcaaggagctctttcatgtttttgatcttgtttgcgagttcttgggtgatttggaagg 17111518  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 244
Target Start/End: Original strand, 17111618 - 17111694
Alignment:
Q  168 ctcttcaggttatgcaaaatcaatgagctctttcatgttattgagttggtttgctagttcttgggtgatttgaaagg 244  Q
    ||||||||| ||| ||||||||| ||||||||||||||| || |  | |||||| ||||||||||||||||| ||||    
T  17111618 ctcttcaggctattcaaaatcaaggagctctttcatgttttttatcttgtttgcaagttcttgggtgatttggaagg 17111694  T

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Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 168 - 244
Target Start/End: Original strand, 3440342 - 3440418
Alignment:
Q  168 ctcttcaggttatgcaaaatcaatgagctctttcatgttattgagttggtttgctagttcttgggtgatttgaaagg 244  Q
    ||||| || |||| ||||||||| ||||||||||||||||||||  |||||||| ||||||||||||||||||||||    
T  3440342 ctctttagattattcaaaatcaaggagctctttcatgttattgatctggtttgcgagttcttgggtgatttgaaagg 3440418  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 244
Target Start/End: Original strand, 26270074 - 26270146
Alignment:
Q  172 tcaggttatgcaaaatcaatgagctctttcatgttattgagttggtttgctagttcttgggtgatttgaaagg 244  Q
    ||||||||| | ||||||| | |||  ||||||||||||| ||||||||| | |||||||||||| |||||||    
T  26270074 tcaggttatactaaatcaaagcgcttgttcatgttattgatttggtttgcgacttcttgggtgatctgaaagg 26270146  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 239
Target Start/End: Complemental strand, 30406395 - 30406294
Alignment:
Q  139 attgcggatcattttttataatttggtggctcttcaggttatgcaaaatcaatgagctctttcatgttattgagttgg-tttgctagttcttgggtgatt 237  Q
    |||| |||||||||| | || ||||||  ||||||| || ||| |||||||| | | ||||||||||| ||||  ||| ||||| |||||||||||||||    
T  30406395 attgtggatcattttctctagtttggtacctcttcaagtcatgtaaaatcaaggtgttctttcatgtttttgatctgggtttgcaagttcttgggtgatt 30406296  T
Q  238 tg 239  Q
    ||    
T  30406295 tg 30406294  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 244
Target Start/End: Original strand, 19847814 - 19847890
Alignment:
Q  168 ctcttcaggttatgcaaaatcaatgagctctttcatgttattgagttggtttgctagttcttgggtgatttgaaagg 244  Q
    |||||||||| |||||||||||    | || |||||||| || | ||||||||||||||||||||||||||| ||||    
T  19847814 ctcttcaggtcatgcaaaatcacgacgttccttcatgtttttaatttggtttgctagttcttgggtgatttggaagg 19847890  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 239
Target Start/End: Original strand, 12656882 - 12656952
Alignment:
Q  169 tcttcaggttatgcaaaatcaatgagctctttcatgttattgagttggtttgctagttcttgggtgatttg 239  Q
    |||||| ||||||| |||||||||   |||||||||   |||| ||||||||||||||||||| |||||||    
T  12656882 tcttcatgttatgctaaatcaatgtattctttcatgcatttgatttggtttgctagttcttggatgatttg 12656952  T

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