View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7060_low_12 (Length: 291)
Name: NF7060_low_12
Description: NF7060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7060_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 69 - 164
Target Start/End: Original strand, 46028274 - 46028369
Alignment:
| Q |
69 |
tggcccccggaaagggccccgtcacaaccagcacacccagcaaggaaaagcgcaaggagagacccaagaagacaggctggataggtagaggcaaag |
164 |
Q |
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| T |
46028274 |
tggcccccggaaagggttccgtcacaaccagcacacccagcaaggaaaagcgcaaggagagacccaagaagacaagttggataggtagaggcaaag |
46028369 |
T |
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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 155
Target Start/End: Complemental strand, 19513620 - 19513534
Alignment:
| Q |
70 |
ggcccccggaaagggccccgtcacaaccagcacacccagcaaggaaaa-gcgcaaggagagacccaagaagacaggctggataggta |
155 |
Q |
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| T |
19513620 |
ggcccccagaaagggacccgccataccaagcgcacccaacaaggaaaaagcgcaaggagagacccaagaagacaggtcggataggta |
19513534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 46028422 - 46028474
Alignment:
| Q |
217 |
taccgttgccaacaaaggacgggctgcacctcccacccataaaaggagcagaa |
269 |
Q |
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| T |
46028422 |
taccgttgccaacaaagaacgggctgcacctcccacttataaaaggagtagaa |
46028474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 69 - 164
Target Start/End: Complemental strand, 42032992 - 42032899
Alignment:
| Q |
69 |
tggcccccggaaagggccccgtcacaaccagcacacccagcaaggaaaagcgcaaggagagacccaagaagacaggctggataggtagaggcaaag |
164 |
Q |
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| T |
42032992 |
tggcccccgaaaagggccccaccacaaccagcgcacccaacaaggaaaagcgcaaggagaga--caagaagacaggctggaaaggtagaggcaaag |
42032899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 42032845 - 42032795
Alignment:
| Q |
217 |
taccgttgccaacaaaggacgggctgcacctcccacccataaaaggagcag |
267 |
Q |
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| T |
42032845 |
taccgttgccaacaaaggacgggttgcacctcccactcataaaaggagcag |
42032795 |
T |
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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 52372900 - 52372835
Alignment:
| Q |
100 |
cacacccagcaaggaaaa-gcgcaaggagagacccaagaagacaggctggataggtagaggcaaag |
164 |
Q |
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| T |
52372900 |
cacatccagcaaggaaaaagcgcaaggagagacccaagaagacaggccggagaggtagaggcaaag |
52372835 |
T |
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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 52372782 - 52372732
Alignment:
| Q |
217 |
taccgttgccaacaaaggacgggctgcacctcccacccataaaaggagcag |
267 |
Q |
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| T |
52372782 |
taccgctgccaacaaaggatgggttgcacctcccactcataaaaagagcag |
52372732 |
T |
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