View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7060_low_14 (Length: 287)
Name: NF7060_low_14
Description: NF7060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7060_low_14 |
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| [»] scaffold0400 (1 HSPs) |
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| [»] scaffold0365 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 17 - 276
Target Start/End: Original strand, 15035534 - 15035793
Alignment:
| Q |
17 |
ctagaaactcttgatttgtcactaaatgaactctctggtaccattcccaataccattggtaatttgtccaaactatcgtatcttgatctcagctttaatt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
15035534 |
ctagaaactcttgatttgtcactaaatgaactctctggtaccattcccaataccattggtaatttgtacaaactatcctatcttgatctcagctttaatt |
15035633 |
T |
|
| Q |
117 |
atctcactgggtctatctcaatttctataggaaagttggccaaaataacaaatctcaagttacattccaatcaactttttggccacattcctcatgaaat |
216 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||| ||||||| |||||| |
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| T |
15035634 |
atctcaccgggtctatctcaatttctataggaaagttggccaaaataaaaaatctcatgttacattcgaatcaactttttggccagattcctcgtgaaat |
15035733 |
T |
|
| Q |
217 |
tgggaatttagtcaacctccagagactagatcttggaaataacagtctttctggcttcat |
276 |
Q |
| |
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||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
15035734 |
tgggaatttggtcaacctccagagactatatcttggaaataacagtctttttggcttcat |
15035793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 117 - 276
Target Start/End: Original strand, 14502740 - 14502899
Alignment:
| Q |
117 |
atctcactgggtctatctcaatttctataggaaagttggccaaaataacaaatctcaagttacattccaatcaactttttggccacattcctcatgaaat |
216 |
Q |
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||||||||||||||||| | ||||||||||||| ||||||||| ||| ||||||| ||| |||||||||||||| ||||||| ||||||| |||||| |
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| T |
14502740 |
atctcactgggtctatccctatttctataggaatgttggccaatatatcaaatctttttttatattccaatcaacttattggccaaattcctcgtgaaat |
14502839 |
T |
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| Q |
217 |
tgggaatttagtcaacctccagagactagatcttggaaataacagtctttctggcttcat |
276 |
Q |
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||||||||| ||||||||||| |||||| ||||||||||||||| |||||||||||||| |
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| T |
14502840 |
tgggaatttggtcaacctccaaagactatatcttggaaataacaacctttctggcttcat |
14502899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 14524582 - 14524472
Alignment:
| Q |
17 |
ctagaaactcttgatttgtcactaaatgaactctctggtaccattcccaataccattggtaatttgtccaaactatcgtatcttgatctcagctttaatt |
116 |
Q |
| |
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||||| ||||||||||||||||||||| |||||||||||| ||||| ||||| ||||||||||||||| |||||||| ||||||||||| ||||| |||| |
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| T |
14524582 |
ctagacactcttgatttgtcactaaataaactctctggtagcattcacaatagcattggtaatttgtcaaaactatcctatcttgatcttagcttcaatt |
14524483 |
T |
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| Q |
117 |
atctcactggg |
127 |
Q |
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||||||||||| |
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| T |
14524482 |
atctcactggg |
14524472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 14502208 - 14502318
Alignment:
| Q |
17 |
ctagaaactcttgatttgtcactaaatgaactctctggtaccattcccaataccattggtaatttgtccaaactatcgtatcttgatctcagctttaatt |
116 |
Q |
| |
|
||||| ||||||||||||||||||||| | |||||||||| ||||||||| | |||||||||||||||||||||| |||||||||||||| || |||| |
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| T |
14502208 |
ctagacactcttgatttgtcactaaataatctctctggtaacattcccaaaagtgttggtaatttgtccaaactatcttatcttgatctcagtttcaatt |
14502307 |
T |
|
| Q |
117 |
atctcactggg |
127 |
Q |
| |
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|||||| |||| |
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| T |
14502308 |
atctcattggg |
14502318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 127
Target Start/End: Complemental strand, 14534555 - 14534449
Alignment:
| Q |
21 |
aaactcttgatttgtcactaaatgaactctctggtaccattcccaataccattggtaatttgtccaaactatcgtatcttgatctcagctttaattatct |
120 |
Q |
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|
||||||||||||||||| | || | |||||||||||||||||||||| ||||||||||||||| ||| |||| |||||||||||||| || |||||||| |
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| T |
14534555 |
aaactcttgatttgtcagttaacaatctctctggtaccattcccaatagcattggtaatttgtcaaaaatatcttatcttgatctcagtttcaattatct |
14534456 |
T |
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| Q |
121 |
cactggg |
127 |
Q |
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||||||| |
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| T |
14534455 |
cactggg |
14534449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 117 - 270
Target Start/End: Complemental strand, 14524050 - 14523897
Alignment:
| Q |
117 |
atctcactgggtctatctcaatttctataggaaagttggccaaaataacaaatctcaagttacattccaatcaactttttggccacattcctcatgaaat |
216 |
Q |
| |
|
||||||||||||| ||||| | |||||||||||| ||| |||| ||| || ||||| ||||| | ||| |||||||||||||||||||||| ||||| |
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| T |
14524050 |
atctcactgggtcaatctctacttctataggaaaattgaccaatatatcatatctccagttataccacaaccaactttttggccacattcctcgcgaaat |
14523951 |
T |
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| Q |
217 |
tgggaatttagtcaacctccagagactagatcttggaaataacagtctttctgg |
270 |
Q |
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||||||||| ||||||||| ||| ||| |||||||| |||| | ||||||||| |
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| T |
14523950 |
tgggaatttggtcaacctcaagaaactcaatcttggatataataatctttctgg |
14523897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 247
Target Start/End: Complemental strand, 14534388 - 14534329
Alignment:
| Q |
188 |
caactttttggccacattcctcatgaaattgggaatttagtcaacctccagagactagat |
247 |
Q |
| |
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|||||| ||||||||||||||| ||||||||||||||| |||||||| ||||||||||| |
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| T |
14534388 |
caacttattggccacattcctcgtgaaattgggaatttggtcaaccttgagagactagat |
14534329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 276
Target Start/End: Original strand, 11005 - 11264
Alignment:
| Q |
17 |
ctagaaactcttgatttgtcactaaatgaactctctggtaccattcccaataccattggtaatttgtccaaactatcgtatcttgatctcagctttaatt |
116 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
11005 |
ctagaaactcttgatttgtcactaaatgaactctctggtagcgttcccaataccattggtaatttctccaaactatcctatcttgatctcagctttaatt |
11104 |
T |
|
| Q |
117 |
atctcactgggtctatctcaatttctataggaaagttggccaaaataacaaatctcaagttacattccaatcaactttttggccacattcctcatgaaat |
216 |
Q |
| |
|
|||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
11105 |
atctcagtgggtctatctctatttctttaggaaagttggccaaaataacaaatctcaagttacattccaatcaacttttcggccacattcctcgtgaaat |
11204 |
T |
|
| Q |
217 |
tgggaatttagtcaacctccagagactagatcttggaaataacagtctttctggcttcat |
276 |
Q |
| |
|
|| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
11205 |
aggaaatttagtcaacctccagagactatatcttggaaataacagcctttctggcttcat |
11264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 276
Target Start/End: Original strand, 11648 - 11907
Alignment:
| Q |
17 |
ctagaaactcttgatttgtcactaaatgaactctctggtaccattcccaataccattggtaatttgtccaaactatcgtatcttgatctcagctttaatt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
11648 |
ctagaaactcttgatttgtcactaaatgaactctctggtagcgttcccaataccattggtaatttctccaaactatcctatcttgatctcagctttaatt |
11747 |
T |
|
| Q |
117 |
atctcactgggtctatctcaatttctataggaaagttggccaaaataacaaatctcaagttacattccaatcaactttttggccacattcctcatgaaat |
216 |
Q |
| |
|
|||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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|
| T |
11748 |
atctcagtgggtctatctctatttctttaggaaagttggccaaaataacaaatctcaagttacattccaatcaacttttcggccacattcctcgtgaaat |
11847 |
T |
|
| Q |
217 |
tgggaatttagtcaacctccagagactagatcttggaaataacagtctttctggcttcat |
276 |
Q |
| |
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|| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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|
| T |
11848 |
aggaaatttagtcaacctccagagactatatcttggaaataacagcctttctggcttcat |
11907 |
T |
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