View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7060_low_18 (Length: 250)
Name: NF7060_low_18
Description: NF7060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7060_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 43430578 - 43430818
Alignment:
| Q |
1 |
agtattttgatattgatataaatggttcaattgatttcaatttttaggtattagggttatgcacaggcagcactactttttataagttctccatcaaatc |
100 |
Q |
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| T |
43430578 |
agtatcttgatattgatataaatggttcaattgatttcaatttttaggtattagggttatgcacaggcagcactactttttataagtgctcaatcaaatc |
43430677 |
T |
|
| Q |
101 |
atcttgatattcnnnnnnnnnnnnnnnnnntttgtgctttattggttgattatatttttaggtcattttgttcttcagattaagagctgcagtactcaat |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43430678 |
atcttgatattcaaaaaaaaatttaaaaaatttgtgctttattggttgattatattttttggtcattttgttcttcagattaagagctgcagtactcaat |
43430777 |
T |
|
| Q |
201 |
tttccttttcgtgtacctgtttcatcacccaccctctctgc |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
43430778 |
tttccttttcgtgtacctgtttcatcacccaccctctctgc |
43430818 |
T |
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