View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7060_low_2 (Length: 513)
Name: NF7060_low_2
Description: NF7060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7060_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 20 - 503
Target Start/End: Complemental strand, 50228291 - 50227808
Alignment:
| Q |
20 |
ggagtcagcattctcttcaccttaccaccctagttctacaatcacttgttttcaaaatttgcggcaatttcagattatatctacgggacaaagatacata |
119 |
Q |
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| T |
50228291 |
ggagtcagcattctcttcacctcaccaccctagttctacaatcacttgttttcaaaatttgcggcaatttcagattatgtctacgggacaaagatacata |
50228192 |
T |
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| Q |
120 |
tatactctctttgggattcggtcaagtaaattgccgagaaacaaagtggtcttctcaatgtaaccattctcaataagttgataattacattctcatacat |
219 |
Q |
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| T |
50228191 |
tatactctctttgggattcggtcaagtaaatcgccgagaaacaaagtggtcttctcaatgtaaccattctcaataagttgataattacattctcatacat |
50228092 |
T |
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| Q |
220 |
ggaagaagaggcagtagcagctgtacttgaggnnnnnnnnaaaaattgaggtgtttcagttggtgccaactgcagaaacttattgtttaaccattgaagc |
319 |
Q |
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| T |
50228091 |
ggaagaaggggcagtagcagctgtacttgaggttttttttaaaaattgaggtgtttcagttggtgccaactgcagaaacttattgtttaaccatcgaagc |
50227992 |
T |
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| Q |
320 |
tctttgcactggaactggaccaaagaaatctgaggtatctgaattggtttgttctgtgtgtcagaagattattgctgcacagacttcctgatggcgaaaa |
419 |
Q |
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| T |
50227991 |
tctttgcactggaactggaccaaagaaatctgaggtatctgaattggtttgttctgtttgtcagaagattattgctgcacagacttcctgatggcgaaaa |
50227892 |
T |
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| Q |
420 |
aatgggtagaataatgtctaggtggtgtagagacggaacgtttaaagaagctcatgcagtatatgtggaagccattaattgaga |
503 |
Q |
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| T |
50227891 |
aatgggtagaataatgtcttggttgtgtagagacggaacgtttaaagaagctcatgcagtatatgtggcagcaattaattgaga |
50227808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 448
Target Start/End: Original strand, 36829696 - 36829777
Alignment:
| Q |
369 |
tgttctgtgtgtcagaagattattgctgcacaga--cttcctgatggcgaaaaaatgggtagaataatgtctaggtggtgta |
448 |
Q |
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|||||||||||||||||||| |||| |||||||| |||||||||| || ||||| |||||||| ||||| ||| ||||| |
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| T |
36829696 |
tgttctgtgtgtcagaagatgattgatgcacagaggattcctgatggtgagaaaattggtagaatgttgtcttggttgtgta |
36829777 |
T |
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