View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7060_low_3 (Length: 427)
Name: NF7060_low_3
Description: NF7060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7060_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 285
Target Start/End: Complemental strand, 30769863 - 30769596
Alignment:
| Q |
18 |
agaaatcacatatcttatcccatctctatatctatttatgtactatgaatatgtttgtagacaggattggagttaaactaaaaacatacaagtgcaagag |
117 |
Q |
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| T |
30769863 |
agaaatcacatatcttatcccatctctatatctatttatgtactatgaatatgtttgtagacaggattggagttaaactaaaaacatataattgcaagag |
30769764 |
T |
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| Q |
118 |
gcaaggtatcaaatatatatgtatgcgtttgtggggctaaaacaatcaaaaaatctttcatcttttctctgactagactctggcatacttttgcagaagc |
217 |
Q |
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| T |
30769763 |
gcaaggtatcaaatatatatgtatgcgtttgtggggctaaaacaatcaaaaaatctttcatcttttctctgactagactctggcatacttttgcagaagc |
30769664 |
T |
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| Q |
218 |
atccacgatcaagccaaggtacctttaccctcccacacccatgtgatatcttttcatatagtccaatg |
285 |
Q |
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| T |
30769663 |
atccacgatcaagccaaggtacctttaccctcccacacccatgtgatatcttttcatatagtccaatg |
30769596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 312 - 417
Target Start/End: Complemental strand, 30769569 - 30769464
Alignment:
| Q |
312 |
acctattaacttattactactagcctattacaatgaatttgtttcatgttgaaattctgcataaatcttgttaaaatcctgagtttccacgttactagct |
411 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30769569 |
acctcttaacttattactactagcctattacaatgaatttgtttcatgttgaaattctgcataaatcttgttaaaatcctgagtttccacgttactagct |
30769470 |
T |
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| Q |
412 |
tctctg |
417 |
Q |
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| T |
30769469 |
tctctg |
30769464 |
T |
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