View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7060_low_9 (Length: 308)

Name: NF7060_low_9
Description: NF7060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7060_low_9
NF7060_low_9
[»] chr1 (7 HSPs)
chr1 (20-295)||(1524281-1524556)
chr1 (216-280)||(43297868-43297932)
chr1 (215-294)||(31325512-31325591)
chr1 (222-296)||(50451411-50451485)
chr1 (215-292)||(20284358-20284435)
chr1 (215-277)||(5193633-5193695)
chr1 (218-297)||(23464849-23464928)
[»] chr8 (2 HSPs)
chr8 (24-265)||(38347786-38348028)
chr8 (215-292)||(23133146-23133223)
[»] chr3 (6 HSPs)
chr3 (215-296)||(26433255-26433336)
chr3 (219-280)||(38647758-38647819)
chr3 (215-299)||(55025359-55025443)
chr3 (215-281)||(11896657-11896723)
chr3 (226-280)||(53608876-53608930)
chr3 (222-298)||(33227808-33227884)
[»] chr7 (1 HSPs)
chr7 (215-299)||(16770521-16770605)
[»] chr6 (2 HSPs)
chr6 (215-295)||(12646660-12646740)
chr6 (189-299)||(35232969-35233079)
[»] chr2 (4 HSPs)
chr2 (215-280)||(572698-572763)
chr2 (215-299)||(14654234-14654318)
chr2 (216-280)||(42403793-42403857)
chr2 (192-292)||(19264899-19264999)
[»] chr4 (4 HSPs)
chr4 (216-292)||(46785039-46785115)
chr4 (222-280)||(3881228-3881286)
chr4 (216-277)||(48846453-48846514)
chr4 (227-299)||(7588186-7588258)
[»] chr5 (3 HSPs)
chr5 (61-127)||(23944370-23944436)
chr5 (215-289)||(23944524-23944598)
chr5 (228-296)||(7813346-7813414)


Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 20 - 295
Target Start/End: Original strand, 1524281 - 1524556
Alignment:
Q  20 gctccaactccctaatggcacttggtcctctgatgattccattctccaagcggaagcacaaaaatatttcaagaaccttttggccaacacccaaccccat 119  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||    
T  1524281 gctccaactccctaatgacacttggtcctctgatgattccattctccaagcggaagcaaaaaaatatttcaagaaccttttggccaacacccaaccctat 1524380  T
Q  120 caaaaccgcaccttcaatttcggcctacaccccaccattgatgagcctagtaagaactccctcacatgtcctatcaccaaaaccgaagtcttcaatgccc 219  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1524381 caaaaccgcaccttcaatttcggcctacaccccaccattgacgagcctagcaagacctccctcacatgtcctatcaccaaaaccgaagtcttcaatgccc 1524480  T
Q  220 ttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatat 295  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  1524481 ttaactccataaaaccttacaaagcacccgaccctgatggttttcaatgcatcttcttcaagaaatactggcatat 1524556  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 216 - 280
Target Start/End: Original strand, 43297868 - 43297932
Alignment:
Q  216 gcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaa 280  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||    
T  43297868 gcccttaactccatgaaaccctacaaagcacccgaccctgatggcttccattgcatcttcttcaa 43297932  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 215 - 294
Target Start/End: Complemental strand, 31325591 - 31325512
Alignment:
Q  215 tgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcata 294  Q
    ||||||||||||||||||||||||||||||||| ||| | ||||||||||| || |||||||||||  |||| |||||||    
T  31325591 tgcccttaactccatgaaaccttacaaagcacctgactcagatggtttccattgtatcttcttcaaacaatattggcata 31325512  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 296
Target Start/End: Original strand, 50451411 - 50451485
Alignment:
Q  222 aactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatatt 296  Q
    ||||||||||||||||| ||||| |||| ||| ||||||||||| ||||||||||||||  | ||||||||||||    
T  50451411 aactccatgaaaccttataaagctcccggcccggatggtttccattgcatcttcttcaaacagtactggcatatt 50451485  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 215 - 292
Target Start/End: Original strand, 20284358 - 20284435
Alignment:
Q  215 tgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggca 292  Q
    ||||||||||||||||||||| |||||||| || |  || ||||||||||| ||||||||||||||| | ||||||||    
T  20284358 tgcccttaactccatgaaaccctacaaagcccctggtccggatggtttccattgcatcttcttcaagcagtactggca 20284435  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 215 - 277
Target Start/End: Complemental strand, 5193695 - 5193633
Alignment:
Q  215 tgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttctt 277  Q
    ||||||||| ||||||||||| ||||||||||||||||| ||||  ||||| |||||||||||    
T  5193695 tgcccttaattccatgaaaccatacaaagcacccgaccccgatgacttccattgcatcttctt 5193633  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 297
Target Start/End: Original strand, 23464849 - 23464928
Alignment:
Q  218 ccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatatta 297  Q
    ||||||||| |||||||||||||||||||| |  || ||||| ||||||||||| || |||||  |||||||||| ||||    
T  23464849 ccttaactctatgaaaccttacaaagcaccaggaccagatggcttccaatgcatttttttcaaacaatactggcacatta 23464928  T

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Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 24 - 265
Target Start/End: Original strand, 38347786 - 38348028
Alignment:
Q  24 caactccctaatggcacttggtcctctgatgattccattctccaagcggaagcacaaaaatat-ttcaagaaccttttggccaacacccaaccccatcaa 122  Q
    ||||||||||||||||| ||||| ||||||||  |||||||||||||| |||| |||||| |  ||||||||||||||||| ||| | ||||| || |||    
T  38347786 caactccctaatggcacctggtcttctgatgacaccattctccaagcgaaagctcaaaaaaaaattcaagaaccttttggctaactctcaaccacaccaa 38347885  T
Q  123 aaccgcaccttcaatttcggcctacaccccaccattgatgagcctagtaagaactccctcacatgtcctatcaccaaaaccgaagtcttcaatgccctta 222  Q
    ||||||||||| || | |||||||||||||||||||||||| || || |||| ||||||||| ||||| ||||  |||||||||||||||| ||||||||    
T  38347886 aaccgcacctttaactacggcctacaccccaccattgatgaaccaagcaagatctccctcacttgtcccatcattaaaaccgaagtcttcactgccctta 38347985  T
Q  223 actccatgaaaccttacaaagcacccgaccctgatggtttcca 265  Q
    |||||||| |||| |||||||| || |||| ||||||||||||    
T  38347986 actccatgcaaccctacaaagcgccggaccttgatggtttcca 38348028  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 215 - 292
Target Start/End: Complemental strand, 23133223 - 23133146
Alignment:
Q  215 tgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggca 292  Q
    ||||||||||||||||||||| |||||||| || |  || ||||||||||| ||||||||||||||| | ||||||||    
T  23133223 tgcccttaactccatgaaaccctacaaagcccctggtccggatggtttccattgcatcttcttcaagcagtactggca 23133146  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 215 - 296
Target Start/End: Complemental strand, 26433336 - 26433255
Alignment:
Q  215 tgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatatt 296  Q
    |||||||||||||||||| ||||||||||| || |  |||||||||||||| ||||||||||||||  | ||||||||||||    
T  26433336 tgcccttaactccatgaagccttacaaagcccctggtcctgatggtttccattgcatcttcttcaaacagtactggcatatt 26433255  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 219 - 280
Target Start/End: Complemental strand, 38647819 - 38647758
Alignment:
Q  219 cttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaa 280  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||| || |||||||||||    
T  38647819 cttaactccatgaaaccttacaaagcacccggcccagatggtttccattgtatcttcttcaa 38647758  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 299
Target Start/End: Complemental strand, 55025443 - 55025359
Alignment:
Q  215 tgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatattatt 299  Q
    |||||||||| ||||||||||||||||||| || | ||| ||||||||||||||||| || |||||  |||| ||||| ||||||    
T  55025443 tgcccttaacaccatgaaaccttacaaagctcctggcccagatggtttccaatgcatatttttcaaacaatattggcacattatt 55025359  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 215 - 281
Target Start/End: Original strand, 11896657 - 11896723
Alignment:
Q  215 tgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaag 281  Q
    ||||||||||||||||||||| |||||||| || |  || ||||||||||| |||||||||||||||    
T  11896657 tgcccttaactccatgaaaccctacaaagcccctggtccggatggtttccattgcatcttcttcaag 11896723  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 280
Target Start/End: Complemental strand, 53608930 - 53608876
Alignment:
Q  226 ccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaa 280  Q
    ||||||| ||||| ||||| ||||   ||||||||||||||||||||||||||||    
T  53608930 ccatgaagccttataaagcccccggtgctgatggtttccaatgcatcttcttcaa 53608876  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 298
Target Start/End: Original strand, 33227808 - 33227884
Alignment:
Q  222 aactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatattat 298  Q
    ||||| ||||| |||| |||||| || || |||||||| ||||||||||| ||||| ||| |||| ||||| |||||    
T  33227808 aactcgatgaatcctttcaaagctccagaacctgatggcttccaatgcatattctttaagaaatattggcacattat 33227884  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 215 - 299
Target Start/End: Complemental strand, 16770605 - 16770521
Alignment:
Q  215 tgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatattatt 299  Q
    |||||||||||| |||||||||||||||||||| |  || ||||||||||||||||| || |||||  |||||||||| ||||||    
T  16770605 tgcccttaactctatgaaaccttacaaagcaccaggtccggatggtttccaatgcatttttttcaaacaatactggcacattatt 16770521  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 215 - 295
Target Start/End: Complemental strand, 12646740 - 12646660
Alignment:
Q  215 tgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatat 295  Q
    |||||| |||||||||||||||||||||||||| | ||| ||||| |||||| |||| ||||||||| |||| ||||||||    
T  12646740 tgccctaaactccatgaaaccttacaaagcacctggcccggatggcttccaaagcattttcttcaagcaatattggcatat 12646660  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 299
Target Start/End: Original strand, 35232969 - 35233079
Alignment:
Q  189 cctatcaccaaaaccgaagtcttcaatgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatact 288  Q
    |||||||| ||||  ||||||||   |||||| |||||||||||||| |||||||| || |  || ||||||||||| ||||| ||||||||| |||| |    
T  35232969 cctatcactaaaaatgaagtctttgctgccctaaactccatgaaaccctacaaagctccaggaccagatggtttccattgcatattcttcaagcaatatt 35233068  T
Q  289 ggcatattatt 299  Q
    |||||||||||    
T  35233069 ggcatattatt 35233079  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 215 - 280
Target Start/End: Original strand, 572698 - 572763
Alignment:
Q  215 tgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaa 280  Q
    ||||||||||||||||||||| |||||||||||||  || ||||| ||||| ||||||||||||||    
T  572698 tgcccttaactccatgaaaccctacaaagcacccgggccagatggcttccattgcatcttcttcaa 572763  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 299
Target Start/End: Complemental strand, 14654318 - 14654234
Alignment:
Q  215 tgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatattatt 299  Q
    |||||||||||||||||| || |||||||| || |  || ||||||||||| ||||||||||||||| | |||| ||||||||||    
T  14654318 tgcccttaactccatgaagccctacaaagcccctggtccagatggtttccattgcatcttcttcaagcagtactagcatattatt 14654234  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 42403857 - 42403793
Alignment:
Q  216 gcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaa 280  Q
    ||||| ||||| ||||| |||||||| ||||| |  |||||||||||||| ||||||||||||||    
T  42403857 gccctcaactctatgaagccttacaaggcacctggtcctgatggtttccattgcatcttcttcaa 42403793  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 292
Target Start/End: Original strand, 19264899 - 19264999
Alignment:
Q  192 atcaccaaaaccgaagtcttcaatgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggc 291  Q
    ||||| ||||||||||| |||  |||||| ||||| ||||| || |||||||| || |  |||||||| || || ||||| ||||||||  |||||||||    
T  19264899 atcactaaaaccgaagtgttcgctgccctcaactctatgaagccatacaaagcccctggtcctgatgggtttcattgcattttcttcaaacaatactggc 19264998  T
Q  292 a 292  Q
    |    
T  19264999 a 19264999  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 216 - 292
Target Start/End: Complemental strand, 46785115 - 46785039
Alignment:
Q  216 gcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggca 292  Q
    ||||| |||||||||||||| |||||| | || |  || ||||||||||||||||||||||||||  ||||||||||    
T  46785115 gccctcaactccatgaaaccctacaaatctcctggtccggatggtttccaatgcatcttcttcaaacaatactggca 46785039  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 280
Target Start/End: Original strand, 3881228 - 3881286
Alignment:
Q  222 aactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaa 280  Q
    ||||||||||||||||| ||||| || | ||| ||||||||||| ||||||||||||||    
T  3881228 aactccatgaaaccttataaagctcctggcccggatggtttccattgcatcttcttcaa 3881286  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 48846453 - 48846514
Alignment:
Q  216 gcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttctt 277  Q
    |||||| |||||||||||||||||||||| || |  |||||||| || ||||| ||||||||    
T  48846453 gcccttcactccatgaaaccttacaaagcccctggtcctgatgggtttcaatgtatcttctt 48846514  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 299
Target Start/End: Complemental strand, 7588258 - 7588186
Alignment:
Q  227 catgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatattatt 299  Q
    |||||||||||| |||||||| |  |||||||| |||||||| ||||| || ||| |||| ||||| ||||||    
T  7588258 catgaaaccttataaagcaccaggtcctgatggcttccaatgtatcttttttaagcaatattggcacattatt 7588186  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 127
Target Start/End: Original strand, 23944370 - 23944436
Alignment:
Q  61 ttctccaagcggaagcacaaaaatatttcaagaaccttttggccaacacccaaccccatcaaaaccg 127  Q
    |||||||||  ||||| ||||| |||||||||||||| || |||||||||||||| ||||| |||||    
T  23944370 ttctccaagaagaagctcaaaagtatttcaagaacctctttgccaacacccaacctcatcataaccg 23944436  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 289
Target Start/End: Original strand, 23944524 - 23944598
Alignment:
Q  215 tgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactg 289  Q
    |||||||||| |||||||||| | |||||| || | ||| |||||||| ||||| |||||||||||| |||||||    
T  23944524 tgcccttaacaccatgaaacccttcaaagcccctggcccagatggttttcaatgtatcttcttcaagcaatactg 23944598  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 296
Target Start/End: Original strand, 7813346 - 7813414
Alignment:
Q  228 atgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatatt 296  Q
    ||||||||||||||||| || |  ||||| |||||||| || |||||||||||  | ||||||||||||    
T  7813346 atgaaaccttacaaagccccaggacctgacggtttccattgtatcttcttcaaacagtactggcatatt 7813414  T

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