View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7061_high_10 (Length: 359)
Name: NF7061_high_10
Description: NF7061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7061_high_10 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 16 - 353
Target Start/End: Original strand, 29423019 - 29423356
Alignment:
| Q |
16 |
atgaaccatgggcctttgccaaacatgcttatgctgagggaagtttcgcacctggacgatgttcaccttggcaaaacttgaattgcaccggtggagattc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
29423019 |
atgaaccatgggcctttgccaaacatgcttatgctgagggaagtttcgcacctggacgatgttcaccctggcaaaacttgaattgcaccggtggagattc |
29423118 |
T |
|
| Q |
116 |
cgccactgaaccctatatagtgactcataatcaaatacttgctcatgcatctgctgtcaatgcctacaaaactaagtatcaggtattattttattttaat |
215 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29423119 |
cgccactgaaccctatatagtgtctcataatcaaatacttgctcatgcatctgctgtcaatgcctacaaaactaagtatcaggtattattttattttaat |
29423218 |
T |
|
| Q |
216 |
taaaagaattaaatcaattcacaaggtgcatgtcttaggcttgggttatgcgctatatatgatcagtttatggtagattttcgaatttagattggaccga |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||| |
|
|
| T |
29423219 |
taaaagaattaaatcaattcacaaggtgcatgtcttaggcttgggttatgcgctatatatgattagtttaggatagattttcgaatttagattggaccga |
29423318 |
T |
|
| Q |
316 |
aatcaatccaacaagtttgtatagcgagagttgctagc |
353 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29423319 |
aatcaatccaacaagtttatatagcgagagttgctagc |
29423356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 29460054 - 29459871
Alignment:
| Q |
16 |
atgaaccatgggcctttgccaaacatgcttatgctgagggaagtttcgcacctggacgatgttcaccttggcaaaacttgaattgcaccggtggagattc |
115 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||| ||| || | | | ||||| |||||||||||| | ||||||||| | |||||||| || ||||| || |
|
|
| T |
29460054 |
atgaaccatggacctttgccaaacatggttatgttgaagggaatctagcacccggacgatgttcatcctggcaaaacctaaattgcactgggggagactc |
29459955 |
T |
|
| Q |
116 |
cgccactgaaccctatatagtgactcataatcaaatacttgctcatgcatctgctgtcaatgcctacaaaactaagtatcaggt |
199 |
Q |
| |
|
||||||||||||||| ||||| |||| |||||| |||||||||||||||| ||||||||| |||||||||||| |||||||| |
|
|
| T |
29459954 |
tgccactgaaccctatctagtggctcacaatcaattacttgctcatgcatcagctgtcaatatctacaaaactaaatatcaggt |
29459871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 63 - 199
Target Start/End: Original strand, 29406320 - 29406456
Alignment:
| Q |
63 |
gcacctggacgatgttcaccttggcaaaacttgaattgcaccggtggagattccgccactgaaccctatatagtgactcataatcaaatacttgctcatg |
162 |
Q |
| |
|
||||| |||||||||||| | ||||| || ||||||| ||||| ||||| ||||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
29406320 |
gcacccggacgatgttcatcctggcatgaccacaattgcattggtggtgattcagccactgaaccctatatagtggctcataatcagttacttgctcatg |
29406419 |
T |
|
| Q |
163 |
catctgctgtcaatgcctacaaaactaagtatcaggt |
199 |
Q |
| |
|
|| |||| ||||| | |||||| |||| |||||||| |
|
|
| T |
29406420 |
caactgccgtcaaagtttacaaagctaaatatcaggt |
29406456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University