View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7061_high_17 (Length: 274)
Name: NF7061_high_17
Description: NF7061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7061_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 27041385 - 27041653
Alignment:
| Q |
1 |
aagttttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaaccttannnnnnnnnnnnnattcatcaaactcaattta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
27041385 |
aagttttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaacctcattttttcatttttattcatcaaactcaattta |
27041484 |
T |
|
| Q |
101 |
agtcctgttatcatttcaccctctactttaaaacaatattgtttaattatcgtagtattattttgatttacaaagggtgaaagtgaaacagattctcggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27041485 |
agtcctgttatcatttcaccctctactttaaaacaatattgtttaattatcgtagtattattttgatttacaaagggtgaaagtgaaacagattctcggt |
27041584 |
T |
|
| Q |
201 |
ccatgggacattgtggaaaaggttttatagctattgatccaacttgtttttctctttcccacacaggtt |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
27041585 |
ccatgggacattgtggaaaaggttttatagctattgatcgaacttgtttttctctttcccacacaggtt |
27041653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 27085863 - 27086131
Alignment:
| Q |
1 |
aagttttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaaccttannnnnnnnnnnnnattcatcaaactcaattta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
27085863 |
aagttttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaaccttatattttcattttcattcatcaaactcaactta |
27085962 |
T |
|
| Q |
101 |
agtcctgttatcatttcaccctctactttaaaacaatattgtttaattatcgtagtattattttgatttacaaagggtgaaagtgaaacagattctcggt |
200 |
Q |
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| T |
27085963 |
agtcttcttatcatttcaccctctactttaaaacaatattgtttaattatcgtagtattattttgatttacaaagggtgaaagtgaaacagattctcggt |
27086062 |
T |
|
| Q |
201 |
ccatgggacattgtggaaaaggttttatagctattgatccaacttgtttttctctttcccacacaggtt |
269 |
Q |
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||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27086063 |
ccatgggacattgtggaaaagtttgtatagctattgatccaacttgtttttctctttcccacacaggtt |
27086131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 5 - 269
Target Start/End: Original strand, 27069811 - 27070075
Alignment:
| Q |
5 |
tttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaaccttannnnnnnnnnnnnattcatcaaactcaatttaagtc |
104 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| || ||||||||||||||| ||||||| |
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| T |
27069811 |
tttaaggctcttgctcttgacctccacacataacctgcaagaacttcaaaagttgtaaaccctattttttcacttttattcatcaaactcaacttaagtc |
27069910 |
T |
|
| Q |
105 |
ctgttatcatttcaccctctactttaaaacaatattgtttaattatcgtagtattattttgatttacaaagggtgaaagtgaaacagattctcggtccat |
204 |
Q |
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||||||| |||| ||||||||||||||| ||||||| ||||| || ||||||||| ||||||| ||||||||||||| || |||||||| || |||||| |
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| T |
27069911 |
ttgttatcgtttcgccctctactttaaaagaatattgcttaataattgtagtattagtttgattcacaaagggtgaaaatgcaacagattttctgtccat |
27070010 |
T |
|
| Q |
205 |
gggacattgtggaaaaggttttatagctattgatccaacttgtttttctctttcccacacaggtt |
269 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
27070011 |
gggacattgtggaaaaggttgtatagctattgatccaacttgtgtttctctttcccacacaggtt |
27070075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 27062740 - 27063002
Alignment:
| Q |
1 |
aagttttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaaccttannnnnnnnnnnnnattcatcaaactcaattta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
27062740 |
aagttttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaaccttatattttcg------ttcatcaaactcaactta |
27062833 |
T |
|
| Q |
101 |
agtcctgttatcatttcaccctctactttaaaacaatattgtttaattatcgtagtattattttgatttacaaagggtgaaagtgaaacagattctcggt |
200 |
Q |
| |
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|||| ||||||| |||| ||||||||||||||||||||||| ||||| || |||||||| |||||| ||||||||||||| || ||||||||||| || |
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| T |
27062834 |
agtcttgttatcgtttcgccctctactttaaaacaatattgcttaataattttagtattaggttgattcacaaagggtgaaaatgcaacagattctctgt |
27062933 |
T |
|
| Q |
201 |
ccatgggacattgtggaaaaggttttatagctattgatccaacttgtttttctctttcccacacaggtt |
269 |
Q |
| |
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||||||| ||||||||||| |||| | ||| ||||| ||||||||| |||||||||||||||||||||| |
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| T |
27062934 |
ccatggggcattgtggaaatggttgtgtagttattgttccaacttggttttctctttcccacacaggtt |
27063002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 27105528 - 27105795
Alignment:
| Q |
1 |
aagttttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaaccttannnnnnnnnnnnnattcatcaaactcaattta |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||| |
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| T |
27105528 |
aagttttaaggctcttgctcttgatctccacacataacctgcaattgattcaaaagttgtgaaccttatacctccactttccttcatcaaactcaactta |
27105627 |
T |
|
| Q |
101 |
agtcctgttatcatttcaccctctactttaaaacaatattgtttaattatcgtagtattattttgatttacaaagggtgaaagtgaaacagattctcggt |
200 |
Q |
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|| ||||| |||||||||||| || ||||||||||||| || || | ||||| || | |||||| | ||| ||||||| || ||||||||| || |
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| T |
27105628 |
agctttgttaacatttcaccctccacattaaaacaatatttcttcataactgtagtgttgtcttgattcagaaaaggtgaaaatgcaacagattccttgt |
27105727 |
T |
|
| Q |
201 |
ccatgggacattgtggaaaaggttttatagctattgatccaacttgtttttctctttcccacacaggt |
268 |
Q |
| |
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||| || | || |||||| |||| | ||| ||||||||||| || | |||||||||||||||||| |
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| T |
27105728 |
tcatagggctttctggaaatggttgtttagttattgatccaataagtctctctctttcccacacaggt |
27105795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 27056698 - 27056764
Alignment:
| Q |
1 |
aagttttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaacctta |
68 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||| |
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| T |
27056698 |
aagttttaaggctcttgctcttgacctctacacataacctgcaagtac-tcaaaagttgtgaacctta |
27056764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 27098529 - 27098796
Alignment:
| Q |
1 |
aagttttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaaccttannnnnnnnnnnnnattcatcaaactcaattta |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||| |||||||| ||||| ||| |
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| T |
27098529 |
aagttttaaggctcttgctcttgatctccaaacataacctgcaattgattcaaaagttgtgaaccttatatttccactttccttcatcaagctcaactta |
27098628 |
T |
|
| Q |
101 |
agtcctgttatcatttcaccctctactttaaaacaatattgtttaattatcgtagtattattttgatttacaaagggtgaaagtgaaacagattctcggt |
200 |
Q |
| |
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|| | ||||||||||||||| || | |||||||||||||| || || | ||||| || | |||||| | ||| ||||||| || ||||||||| || |
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| T |
27098629 |
agccttgttatcatttcaccatcaatattaaaacaatattgcttcataactgtagtgttgtgttgattcagaaaaggtgaaaatgcaacagattccttgt |
27098728 |
T |
|
| Q |
201 |
ccatgggacattgtggaaaaggttttatagctattgatccaacttgtttttctctttcccacacaggt |
268 |
Q |
| |
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||| || | || |||||| |||| | || ||||||||||| || | |||||||||||||||||| |
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| T |
27098729 |
tcatagggctttctggaaatggttgttcagttattgatccaataagtctctctctttcccacacaggt |
27098796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 27045798 - 27045834
Alignment:
| Q |
1 |
aagttttaaggctcttgctcttgacctccacacataa |
37 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||| |
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| T |
27045798 |
aagttgtaaggctcttgctcttgacctccacacataa |
27045834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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