View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7061_high_18 (Length: 206)
Name: NF7061_high_18
Description: NF7061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7061_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 7e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 8758031 - 8758201
Alignment:
| Q |
20 |
agagtaggttggagctttatcagtctagaggttcaagaggattccatcataaattgcatcagtaggaagagtagtacattgccatcatcattgtaaatgt |
119 |
Q |
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| T |
8758031 |
agagtaggttggagctttatcagtctagaggttcaagaggattccatcataaattgcatcagtaggaagaatagtacattgccatcatcattgtaaatgt |
8758130 |
T |
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| Q |
120 |
taaggtttttcagccactcataattcttatctgttccaccattcttctgagtatgtatacaatcaatttgg |
190 |
Q |
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| T |
8758131 |
taaggtttttcagccattcataattcttatctattccaccattcttctgagtatgtatacaatcaatttgg |
8758201 |
T |
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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 32030431 - 32030362
Alignment:
| Q |
20 |
agagtaggttggagctttatcagtctagaggttcaagaggattccatcataaattgcatcagtaggaagagta |
92 |
Q |
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|||||||| |||||||||| |||||||||||||||||||||||| || ||||| ||||| ||||||||||| |
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| T |
32030431 |
agagtaggctggagctttaccagtctagaggttcaagaggattc---caaaaattacatcaataggaagagta |
32030362 |
T |
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