View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7061_high_3 (Length: 590)
Name: NF7061_high_3
Description: NF7061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7061_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 133 - 483
Target Start/End: Original strand, 17790122 - 17790472
Alignment:
| Q |
133 |
atgatgttttcctcagttttcgaggagaggatagttgaaagggttttactggaaacctttacattactctttgtgaaaaaggaatcaacactttcataga |
232 |
Q |
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| T |
17790122 |
atgatgttttcctcagttttcgaggagaggatactcgaaagggttttaccggaaacctttataaagctctttgtggaaaaggaatcgacactttcataga |
17790221 |
T |
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| Q |
233 |
tgatcaagagcttaggaaaggagaagaaatcacaccagctctcatgatggcaatccaagaatcaaggattgcaattgtgattttctca-aaaactatgca |
331 |
Q |
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| T |
17790222 |
tgaccaagagcttaggaaaggagaagaaatcacaccagcactcatgatggcaatccaagaatcaaggattgcaattgtgattttttcagaaaactatgca |
17790321 |
T |
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| Q |
332 |
tcatccactttttgtttgaaagaacttacaaagatcatggagtgcataaaacacaagggcaggttggttttaccagnnnnnnnatcaagttgacccttct |
431 |
Q |
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| T |
17790322 |
tcatccactttctgtttgaaagaacttacaaagatcatggagtgcataaaacacaagggaaggatggttttaccag-ttttttatcatgttgacccttgt |
17790420 |
T |
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| Q |
432 |
gatgtgcaccatcagaaagggagctacgcaaaagcattggccagtcatgaaa |
483 |
Q |
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| T |
17790421 |
attgtgcgccatcagaaagggagctacgcaaaagcattggccgatcatgaaa |
17790472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 133 - 548
Target Start/End: Original strand, 17801071 - 17801484
Alignment:
| Q |
133 |
atgatgttttcctcagttttcgaggagaggatagttgaaagggttttactggaaacctttacattactctttgtgaaaaaggaatcaacactttcataga |
232 |
Q |
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| T |
17801071 |
atgatgttttcctcagttttcgaggagaggatactcgaaatggttttaccggaaacctttataaagctctttgtggaaaaggaattaatactttcataga |
17801170 |
T |
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| Q |
233 |
tgatcaagagcttaggaaaggagaagaaatcacaccagctctcatgatggcaatccaagaatcaaggattgcaattgtgattttctca-aaaactatgca |
331 |
Q |
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| T |
17801171 |
tgataaaaatcttggcaaaggagaagaaatcacaccagccctcatgatggcaatccaagaatcaaggattgcaattgtgattttctcagaaaactatgca |
17801270 |
T |
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| Q |
332 |
tcatccactttttgtttgaaagaacttacaaagatcatggagtgcataaaacacaagggcaggttggttttaccagnnnnnnnatcaagttgacccttct |
431 |
Q |
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| T |
17801271 |
tcatccactttttgtttgaaagaacttacaaagatcatggagtgcataaaacacaagggcaggttggttttgcca-attttttatcaagttgacccggct |
17801369 |
T |
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| Q |
432 |
gatgtgcaccatcagaaagggagctacgcaaaagcattggccagtcatgaaaagnnnnnnnnnccattgacaaggcaatcatcaaacagtggaggttagc |
531 |
Q |
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| T |
17801370 |
gatgtgcgccatcagaaagggagctacgcaaatgcactggccagtcatgaaa--gaaaaaaaaccattgacaaaataatggtcaaacagtggaggttagc |
17801467 |
T |
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| Q |
532 |
tttccaagaagcagcta |
548 |
Q |
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| T |
17801468 |
tttgcaagaagcagcta |
17801484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 202 - 578
Target Start/End: Original strand, 17817093 - 17817448
Alignment:
| Q |
202 |
tttgtgaaaaaggaatcaacactttcatagatgatcaagagcttaggaaaggagaagaaatcacaccagctctcatgatggcaatccaagaatcaaggat |
301 |
Q |
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| T |
17817093 |
tttgtgaaaaaggaatcaacactttcatagatgatcaagagcttaggaaaggagaagaaatcacaccagctctcatgatggca----------------- |
17817175 |
T |
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| Q |
302 |
tgcaattgtgattttctca-aaaactatgcatcatccactttttgtttgaaagaacttacaaagatcatggagtgcataaaacacaagggcaggttggtt |
400 |
Q |
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| T |
17817176 |
----attgtgattttctctgaaaactatgcatcatccactttttgtttggaagcacttagaaagatcatggagtgcataaaacacaagggaaggttggtt |
17817271 |
T |
|
| Q |
401 |
ttaccagnnnnnnnatcaagttgacccttctgatgtgcaccatcagaaagggagctacgcaaaagcattggccagtcatgaaaagnnnnnnnnnccattg |
500 |
Q |
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| T |
17817272 |
ttaccagtttttttatcaagttgacccttctgatgtgcgccatcagaaagggagctacgcaaaagcattggccagtcatgaaaagaaaaaaaat-cattg |
17817370 |
T |
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| Q |
501 |
acaaggcaatcatcaaacagtggaggttagctttccaagaagcagctaatcgggtaggttggcatttcagacacaggt |
578 |
Q |
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| T |
17817371 |
acaaggcaatcgtcaaacagtggaggttagctttgcaagaagcagctaatctggtaggttggcatttcagacacaggt |
17817448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 149 - 179
Target Start/End: Original strand, 17817065 - 17817095
Alignment:
| Q |
149 |
ttttcgaggagaggatagttgaaagggtttt |
179 |
Q |
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| T |
17817065 |
ttttcgaggagaggatagttgaaagggtttt |
17817095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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