View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7061_high_5 (Length: 460)
Name: NF7061_high_5
Description: NF7061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7061_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 19 - 453
Target Start/End: Original strand, 5566168 - 5566602
Alignment:
| Q |
19 |
atttcgttgtctattcttcctcctaagaaaggtcatgcttctcacacttccacttattcactctagttcatagatcgatgttagattaagaaatattgga |
118 |
Q |
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| T |
5566168 |
atttcgttgtctattcttcctcctaagaaaggtcatgcttctcacacttccacttattcactctagttcataaatcgatgttagattaagaaatattgga |
5566267 |
T |
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| Q |
119 |
acctagactcaaatctagtaaacattataatattaattaataattacatttaacgagaaataattccaacatgaaattaagccaccaacacaatattacg |
218 |
Q |
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| T |
5566268 |
acctagactcaaatctagtaaacattataatattaattaataattacatttaacgagaaataattccaacatcaaattaagccaccaacacaatattacg |
5566367 |
T |
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| Q |
219 |
gattatgacacatcaatcctaatttattctactcaatttatgattgcttattgcttacacgtaataagttgaacttatcgttctattatgcaaataaatt |
318 |
Q |
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| T |
5566368 |
gattatgacacatcaatcctaatttattctactcaatttatgattgcttattgcttacacgtaataagttgaacttatcgttctattatgcaaataaatt |
5566467 |
T |
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| Q |
319 |
gagcttatttaaggtcatgcctatgacttgaacttatttatataacgagttgagcaagacgtttgatatccgttggataggttacctctggattagaagt |
418 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5566468 |
gagcttatttaaggtcatgcctataacttgaacttatttatataacgagttgagcaagacgtttgatatccgttggataggttacctctggattagaagt |
5566567 |
T |
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| Q |
419 |
actatcatacacaagtgatgcgatgatattcttcg |
453 |
Q |
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| T |
5566568 |
actatcatacacaagtgatgcgatgatattgttcg |
5566602 |
T |
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