View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7061_high_6 (Length: 460)

Name: NF7061_high_6
Description: NF7061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7061_high_6
NF7061_high_6
[»] chr4 (17 HSPs)
chr4 (208-443)||(7051417-7051652)
chr4 (16-141)||(7051232-7051357)
chr4 (16-141)||(7025248-7025373)
chr4 (316-443)||(7018898-7019025)
chr4 (307-443)||(7044435-7044570)
chr4 (316-443)||(7001161-7001288)
chr4 (307-443)||(6992536-6992672)
chr4 (316-443)||(7011254-7011381)
chr4 (316-443)||(7037687-7037814)
chr4 (17-141)||(7000964-7001088)
chr4 (316-443)||(7025866-7025993)
chr4 (17-141)||(6992164-6992288)
chr4 (17-120)||(7009951-7010054)
chr4 (17-123)||(7036575-7036681)
chr4 (17-120)||(7044241-7044344)
chr4 (46-141)||(7018017-7018113)
chr4 (212-291)||(7025496-7025575)
[»] chr3 (1 HSPs)
chr3 (385-437)||(46185251-46185303)


Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 208 - 443
Target Start/End: Original strand, 7051417 - 7051652
Alignment:
Q  208 cattgagttaaatcaataattataatatgatatgtttttatatggcgtcaaatacatcggtaatttttagatgttcaaataacaaaataaatggctgtgt 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  7051417 cattgagttaaatcaataattataatatgatatgtttttatatggcgtcaaatacatccgtaatttttagatgttcaaataacaaaataaatggctgtgt 7051516  T
Q  308 atattttcgataggtacgtggggttaggggaaacagatgacgacatgcaagtgttctattattttgttaagtcagcaaataatcctcagaaagatcctct 407  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7051517 atattttcgataggtacttggggttaggggaaacagatgacgacatgcaagtgttctattattttgttaagtcagaaaataatcctcagaaagatcctct 7051616  T
Q  408 tatgctttggttatctggtggtcctggttgttcttc 443  Q
    ||||||||||||||||||||||||||| ||||||||    
T  7051617 tatgctttggttatctggtggtcctggctgttcttc 7051652  T

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Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 7051232 - 7051357
Alignment:
Q  16 cactttttagtttgcatatgttaactcctcttgaagcttccggctcaagagttgaacaccttcctggttttcaagggccgctcccttttgaacttgaaac 115  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7051232 cactttttagtttgcatatgttaactcctcttgaagcttctggctcaagagttgaacaccttcctggttttcaagggccgctcccttttgaacttgaaac 7051331  T
Q  116 ggggtgagagcaatcataatcattcc 141  Q
    |||||||| |||||| ||||||||||    
T  7051332 ggggtgagggcaatcctaatcattcc 7051357  T

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Target: chr4; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 7025248 - 7025373
Alignment:
Q  16 cactttttagtttgcatatgttaactcctcttgaagcttccggctcaagagttgaacaccttcctggttttcaagggccgctcccttttgaacttgaaac 115  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7025248 cactttttagtttgcatatgttaactcctcttgaagcttatggctcaaaggttgaacaccttcctggttttcaagggccactcccttttgaacttgaaac 7025347  T
Q  116 ggggtgagagcaatcataatcattcc 141  Q
    |||||||| |||||| ||||||||||    
T  7025348 ggggtgagggcaatcctaatcattcc 7025373  T

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Target: chr4; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 316 - 443
Target Start/End: Original strand, 7018898 - 7019025
Alignment:
Q  316 gataggtacgtggggttaggggaaacagatgacgacatgcaagtgttctattattttgttaagtcagcaaataatcctcagaaagatcctcttatgcttt 415  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| ||||||| |||||||||||| ||||| ||||| || ||||    
T  7018898 gataggtacgtgggattaggggaaacagatgatgacatgcaagtgttttattattttgtaaagtcagaaaataatcctcaaaaagaccctctaattcttt 7018997  T
Q  416 ggttatctggtggtcctggttgttcttc 443  Q
    ||||||||||||||||||||||||||||    
T  7018998 ggttatctggtggtcctggttgttcttc 7019025  T

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Target: chr4; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 307 - 443
Target Start/End: Original strand, 7044435 - 7044570
Alignment:
Q  307 tatattttcgataggtacgtggggttaggggaaacagatgacgacatgcaagtgttctattattttgttaagtcagcaaataatcctcagaaagatcctc 406  Q
    |||||||| |||||||||||||||||||| ||| || |||| |||||||||||||||||||||||||| || |||| |||||||||| ||||||| ||||    
T  7044435 tatatttt-gataggtacgtggggttaggagaagcaaatgatgacatgcaagtgttctattattttgtcaaatcagaaaataatcctaagaaagaccctc 7044533  T
Q  407 ttatgctttggttatctggtggtcctggttgttcttc 443  Q
    ||||||||||| |||||||||||||||||||||||||    
T  7044534 ttatgctttggatatctggtggtcctggttgttcttc 7044570  T

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Target: chr4; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 316 - 443
Target Start/End: Original strand, 7001161 - 7001288
Alignment:
Q  316 gataggtacgtggggttaggggaaacagatgacgacatgcaagtgttctattattttgttaagtcagcaaataatcctcagaaagatcctcttatgcttt 415  Q
    ||||||||||| |||||||| ||| || |||| |||||||||||||||||||||||||| || |||| || |||||||||||||||||||||||||||||    
T  7001161 gataggtacgtagggttaggagaagcaaatgatgacatgcaagtgttctattattttgtcaaatcagaaagtaatcctcagaaagatcctcttatgcttt 7001260  T
Q  416 ggttatctggtggtcctggttgttcttc 443  Q
    |||||||||| |||||||||||||||||    
T  7001261 ggttatctggaggtcctggttgttcttc 7001288  T

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Target: chr4; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 307 - 443
Target Start/End: Original strand, 6992536 - 6992672
Alignment:
Q  307 tatattttcgataggtacgtggggttaggggaaacagatgacgacatgcaagtgttctattattttgttaagtcagcaaataatcctcagaaagatcctc 406  Q
    ||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | || |||| |||  ||||||| ||||| ||||    
T  6992536 tatatatttgataggtacgtggggttaggggaaacagatgatgacatgcaagtgttctattattttatcaaatcagaaaacgatcctcaaaaagaccctc 6992635  T
Q  407 ttatgctttggttatctggtggtcctggttgttcttc 443  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  6992636 ttatgctttggttaactggtggtcctggctgttcttc 6992672  T

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Target: chr4; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 316 - 443
Target Start/End: Original strand, 7011254 - 7011381
Alignment:
Q  316 gataggtacgtggggttaggggaaacagatgacgacatgcaagtgttctattattttgttaagtcagcaaataatcctcagaaagatcctcttatgcttt 415  Q
    ||||||||||| |||||||| ||| || |||| |||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||    
T  7011254 gataggtacgtagggttaggagaagcaaatgatgacatgcaagtgttctattattttgtaaagtcagaaagtaatcctcagaaagatcctcttatgcttt 7011353  T
Q  416 ggttatctggtggtcctggttgttcttc 443  Q
    || || |||||||||||||||| |||||    
T  7011354 ggataactggtggtcctggttgctcttc 7011381  T

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Target: chr4; HSP #9
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 316 - 443
Target Start/End: Original strand, 7037687 - 7037814
Alignment:
Q  316 gataggtacgtggggttaggggaaacagatgacgacatgcaagtgttctattattttgttaagtcagcaaataatcctcagaaagatcctcttatgcttt 415  Q
    |||||||| |||||||| || ||| || |||| |||||||||||||||||||||||| | ||||||| |||||||||||||||||| |||||||||||||    
T  7037687 gataggtatgtggggttgggagaatcaaatgatgacatgcaagtgttctattattttatcaagtcagaaaataatcctcagaaagaccctcttatgcttt 7037786  T
Q  416 ggttatctggtggtcctggttgttcttc 443  Q
    ||||| ||||||||||||||||||||||    
T  7037787 ggttaactggtggtcctggttgttcttc 7037814  T

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Target: chr4; HSP #10
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 7000964 - 7001088
Alignment:
Q  17 actttttagtttgcatatgttaactcctcttgaagcttccggctcaagagttgaacaccttcctggttttcaagggccgctcccttttgaacttgaaacg 116  Q
    |||| |||||||||||||||||||||||||||||||||  |||||||  |||||||| ||||||||||||||||| || || |||||||||||||||||     
T  7000964 acttcttagtttgcatatgttaactcctcttgaagcttatggctcaaaggttgaacagcttcctggttttcaaggtccacttccttttgaacttgaaaca 7001063  T
Q  117 gggtgagagcaatcataatcattcc 141  Q
    |||||||||||||| ||||||||||    
T  7001064 gggtgagagcaatcctaatcattcc 7001088  T

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Target: chr4; HSP #11
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 316 - 443
Target Start/End: Original strand, 7025866 - 7025993
Alignment:
Q  316 gataggtacgtggggttaggggaaacagatgacgacatgcaagtgttctattattttgttaagtcagcaaataatcctcagaaagatcctcttatgcttt 415  Q
    |||||||||||||||||||| ||  || |||| |||||||||||||| || |||||||| ||||||| |||||||||||||||||| |||||||||||||    
T  7025866 gataggtacgtggggttaggagattcaaatgatgacatgcaagtgttttactattttgtaaagtcagaaaataatcctcagaaagaccctcttatgcttt 7025965  T
Q  416 ggttatctggtggtcctggttgttcttc 443  Q
    ||||| ||||||||||||| ||||||||    
T  7025966 ggttaactggtggtcctggctgttcttc 7025993  T

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Target: chr4; HSP #12
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 6992164 - 6992288
Alignment:
Q  17 actttttagtttgcatatgttaactcctcttgaagcttccggctcaagagttgaacaccttcctggttttcaagggccgctcccttttgaacttgaaacg 116  Q
    |||||||| |||| |||||||||||| | |||||||||  |||||||  |||||||| ||||||||||||||||| || || |||||||||||||||||     
T  6992164 actttttactttgaatatgttaactcatattgaagcttatggctcaaaggttgaacatcttcctggttttcaaggacctcttccttttgaacttgaaact 6992263  T
Q  117 gggtgagagcaatcataatcattcc 141  Q
    |||||||||||||| ||||||||||    
T  6992264 gggtgagagcaatcttaatcattcc 6992288  T

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Target: chr4; HSP #13
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 7009951 - 7010054
Alignment:
Q  17 actttttagtttgcatatgttaactcctcttgaagcttccggctcaagagttgaacaccttcctggttttcaagggccgctcccttttgaacttgaaacg 116  Q
    |||| |||||||||||||||||||||||||||||||||  |||||||  |||||||| |||||||||||||||||||| || |||||||||||||||||     
T  7009951 acttcttagtttgcatatgttaactcctcttgaagcttatggctcaaaggttgaacatcttcctggttttcaagggccacttccttttgaacttgaaact 7010050  T
Q  117 gggt 120  Q
    ||||    
T  7010051 gggt 7010054  T

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Target: chr4; HSP #14
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 7036575 - 7036681
Alignment:
Q  17 actttttagtttgcatatgttaactcctcttgaagcttccggctcaagagttgaacaccttcctggttttcaagggccgctcccttttgaacttgaaacg 116  Q
    |||| |||||||||||||||||||||||||||||||||  |||||||  |||||||||||||||||||||||||| || || |||||| ||||||||||     
T  7036575 acttcttagtttgcatatgttaactcctcttgaagcttatggctcaaaggttgaacaccttcctggttttcaaggacctcttccttttcaacttgaaaca 7036674  T
Q  117 gggtgag 123  Q
    |||||||    
T  7036675 gggtgag 7036681  T

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Target: chr4; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 7044241 - 7044344
Alignment:
Q  17 actttttagtttgcatatgttaactcctcttgaagcttccggctcaagagttgaacaccttcctggttttcaagggccgctcccttttgaacttgaaacg 116  Q
    ||||||||||||||| |||||||||||||||||||||||  ||||||  |||||||| ||||||||||||||||| || || || ||||||||||||||     
T  7044241 actttttagtttgcagatgttaactcctcttgaagcttctcgctcaaaggttgaacatcttcctggttttcaaggacctcttccatttgaacttgaaaca 7044340  T
Q  117 gggt 120  Q
    ||||    
T  7044341 gggt 7044344  T

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Target: chr4; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 46 - 141
Target Start/End: Original strand, 7018017 - 7018113
Alignment:
Q  46 ttgaagcttccggctcaagagttgaacaccttcctggtttt-caagggccgctcccttttgaacttgaaacggggtgagagcaatcataatcattcc 141  Q
    |||||||||  |||||||  |||||||| |||||||||||| ||||| || || |||||||||||||||||||||||||| ||||| ||||||||||    
T  7018017 ttgaagcttatggctcaaaggttgaacagcttcctggtttttcaaggaccacttccttttgaacttgaaacggggtgagaccaatcctaatcattcc 7018113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 291
Target Start/End: Original strand, 7025496 - 7025575
Alignment:
Q  212 gagttaaatcaataattataatatgatatgtttttatatggcgtcaaatacatcggtaatttttagatgttcaaataaca 291  Q
    |||| ||||||| | |||||||||||||||||||||||||  || |||||| |  ||||| |||||||||||||||||||    
T  7025496 gagtcaaatcaacagttataatatgatatgtttttatatgatgtgaaataccttagtaatatttagatgttcaaataaca 7025575  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 437
Target Start/End: Complemental strand, 46185303 - 46185251
Alignment:
Q  385 aataatcctcagaaagatcctcttatgctttggttatctggtggtcctggttg 437  Q
    ||||||||| |  ||||||||||  ||||||||||| ||||||||||||||||    
T  46185303 aataatcctaaacaagatcctctcttgctttggttaactggtggtcctggttg 46185251  T

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