View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7061_high_9 (Length: 360)
Name: NF7061_high_9
Description: NF7061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7061_high_9 |
 | |
|
| [»] scaffold0006 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 19 - 352
Target Start/End: Complemental strand, 50545720 - 50545387
Alignment:
| Q |
19 |
ctcaattctcagatccggttacctgaagccaaaacggcggcaaccttcaatggtttccgaaaatctcatacgcccgtctgccttcatcaaaagaatcaga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50545720 |
ctcaattctcagatccggttacctgaagccaaaacggcggcaaccttcaatggttgccggaaatctcatacgcccgtctgccttcatcaaaagaatcaga |
50545621 |
T |
|
| Q |
119 |
ttcatttatttttcatacaatcaatataaagaaatcaattgtgtaaatacatacaaccataaattaagaaattgggattcaatggttatttggatatggg |
218 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
50545620 |
ttcatgtatttttcatacaatcaatataaagaaatcaattgtgtaaatacatacaaccataaattaagaaattgagattcaatggttatttggatatgga |
50545521 |
T |
|
| Q |
219 |
atcgttggcacagatgttgattcaatggttcctgattttacccatggttaataggatatggaatcattgatagagatgtctatgaaagggaattctatta |
318 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
50545520 |
atctttggcacagatgttgattcaatggttcctgattttacccatggttaataggatatggaatcattgatagagatgtctatggaagggaattctatta |
50545421 |
T |
|
| Q |
319 |
aaaatgaatgattttatatatcaggtcttcatct |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
50545420 |
aaaatgaatgattttatatatcaggtcttcatct |
50545387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 48058654 - 48058708
Alignment:
| Q |
19 |
ctcaattctcagatccggttacctgaagccaaaacggcggcaaccttcaatggtt |
73 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
48058654 |
ctcaattctcagatccggttacctgaagccaaaacgtcggcaaccttcaatggtt |
48058708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 260 - 338
Target Start/End: Complemental strand, 31203326 - 31203248
Alignment:
| Q |
260 |
ccatggttaataggatatggaatcattgatagagatgtctatgaaagggaattctattaaaaatgaatgattttatata |
338 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||| || ||||||||||| || ||||||||||| |||| |
|
|
| T |
31203326 |
ccatggttaattggatatggaatcattgacagagatgtctatggaaaggaattctattgtaagtgaatgattttgtata |
31203248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 235
Target Start/End: Complemental strand, 31203369 - 31203289
Alignment:
| Q |
155 |
aattgtgtaaatacatacaaccataaattaagaaattgggattcaatggttatttggatatgggatcgttggcacagatgt |
235 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||| |||||| ||||||| |||||||||| ||| ||| || |||||| |
|
|
| T |
31203369 |
aattgtgaaaatacatacaaccctaaattaagaaatttggattccatggttaattggatatggaatcattgacagagatgt |
31203289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 224173 - 224222
Alignment:
| Q |
19 |
ctcaattctcagatccggttacctgaagccaaaacg-gcggcaaccttca |
67 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
224173 |
ctcaattctcagatccggttacctgaagccaaaacgaccggcaaccttca |
224222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University