View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7061_low_1 (Length: 1188)
Name: NF7061_low_1
Description: NF7061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7061_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 692; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 692; E-Value: 0
Query Start/End: Original strand, 19 - 968
Target Start/End: Complemental strand, 45527988 - 45527063
Alignment:
| Q |
19 |
gtttcgtcgtatgctatgttggctatggtggagattgttggagaatcgtttgtgttgagaattgagactaggattacaacgaggaacatgcagattgaaa |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45527988 |
gtttcgtcgtatgctatgttggctatggtggagattgttggagaatcgtttgtgttgagaattgagactaggattacaacgaggaacatgcagattgaaa |
45527889 |
T |
|
| Q |
119 |
cgggagtgataattctaacgatttcttcgcctaaactatcgagaacggttgttgaagatgatgaagttcttcgggtttctgccattgttgcgatacgaag |
218 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
45527888 |
caggagtgataattctaacgatttcttcgcctaaactatcgagaacggttgttgaagatgatgaagttcttcgggtttctgccattgttgcgaaacgaag |
45527789 |
T |
|
| Q |
219 |
agttcagatcgaaagcagaaagtgttgtattactgttaatctgttatggatgcttcttccttgactctccaataattggtcgggcctaaacaagacatat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
45527788 |
agttcagatcgaaagcagaaagtgttgtattactgttaatctgttatggatgcttcttccttgactctccaataatgggtcgggccgaaacaagacatat |
45527689 |
T |
|
| Q |
319 |
atggatagttactatttgcacctctgtatgcaagcttgcgcagagatttgcaaacaaatataccacatttagttagtaaactgcatctccattccataga |
418 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45527688 |
atggatagttactatttgcacctctctatgcaagcttgcgcagagatttgcaaacaaatataccacatttagttagtaaactgcatctccattccataga |
45527589 |
T |
|
| Q |
419 |
atgtaatttaattaa---------ttttatttttaaagttaagttcaatgactagttgacccaatcccaaactatcacactcttatcggattgaattttt |
509 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
45527588 |
atgtaatttaattaatttttttaattttatttttaaagttaagttcaatgactag-----------------tatcacactcttatcggattgaattttt |
45527506 |
T |
|
| Q |
510 |
tcaggtttgacataaaaaataca-nnnnnnnncactcaaccaaaatagatccaaatcaacccgtgagcgtccttacctaaccaccaagtaaaccttatat |
608 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
45527505 |
tcaggtttgacataaaaaatacatttttttttcactcaaccaaaatagatccaaatcaacccgtgagcgtccctacctaaccaccaagtaaaccttatat |
45527406 |
T |
|
| Q |
609 |
cctttagtttatagggacaatgcatatagcttaaactcannnnnnnnnggtgtgaactaaatatcctttcctctatgtgcaattataaatattaatccag |
708 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
45527405 |
cctttagtttatagggacaatgcatatagcttaaactca-ttttttttggtgtgaaccaaatatcctttcctctgtgtgcaactataaatattaatccag |
45527307 |
T |
|
| Q |
709 |
acaaatcttgtcctcaagagattttacaatg--gcattcacaaagctgaattcgaacccatgaccactagttaagtagtaagagatcccttactatctca |
806 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||| |
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|
| T |
45527306 |
acaaatcttgtcctcaagagattttacaatgctgcattcacaaagctgacttcgaacccatgaccactagttaagtcgtaagagatcccttaccatctca |
45527207 |
T |
|
| Q |
807 |
ttaaagtgttcttgggtatcccttaaactctttcgtagtatgtttttcctttgttgtttttggtgaataaacacttctggtgggtacaaatagcaactct |
906 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45527206 |
ttaaagtgttct------------------tttcgtagtatgtttttcctttgttgtttttggtgaataaacacttctggtgggtacaaatagcaactct |
45527125 |
T |
|
| Q |
907 |
gcagtgacgatgggcctaggcctacctttcttaaaagagaagaaacatgggtgcattttgaa |
968 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45527124 |
gcagtgacgatgggcctaggcctacctttcttaaaagagaagaaacatgggtgcattttgaa |
45527063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 156; Significance: 3e-82; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 3e-82
Query Start/End: Original strand, 968 - 1134
Target Start/End: Complemental strand, 30734790 - 30734623
Alignment:
| Q |
968 |
agaaggttactctttaggccc-tccatatctctttaggccccctaaagtgaccaaattaacctttgtgtatataaattctgaacaatccggtatgtatct |
1066 |
Q |
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|
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30734790 |
agaaggttactctttaggcccctctatatctctttaggccccctaaagtgaccaaattaacctttgtgtatataaattctgaacaatccggtatgtatct |
30734691 |
T |
|
| Q |
1067 |
accggaggaccattttgctcatgaaaaaacataccaaacagacttcttttatattacaccatttacca |
1134 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30734690 |
accggaggaccattttgctcatgaaaaaacataccaaacagacttcttttatattacaccatttacca |
30734623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 753 - 823
Target Start/End: Complemental strand, 3765295 - 3765225
Alignment:
| Q |
753 |
tgaattcgaacccatgaccactagttaagtagtaagagatcccttactatctcattaaagtgttcttgggt |
823 |
Q |
| |
|
|||||||||||||| |||| || |||||| | |||||||||||||| |||||||| ||||| |||||||| |
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| T |
3765295 |
tgaattcgaacccaggacctctggttaagctggaagagatcccttaccatctcattcaagtgctcttgggt |
3765225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 986 - 1015
Target Start/End: Original strand, 52497548 - 52497577
Alignment:
| Q |
986 |
ccctccatatctctttaggccccctaaagt |
1015 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
52497548 |
ccctccatatctctttaggccccctaaagt |
52497577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 6e-40; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 1046 - 1134
Target Start/End: Original strand, 22376497 - 22376585
Alignment:
| Q |
1046 |
tgaacaatccggtatgtatctaccggaggaccattttgctcatgaaaaaacataccaaacagacttcttttatattacaccatttacca |
1134 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22376497 |
tgaacaatccggtatgtatctactggaggaccattttgctcatgaaaaaacataccaaacagacttcttttatattacaccatttacca |
22376585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 968 - 1014
Target Start/End: Original strand, 19593389 - 19593435
Alignment:
| Q |
968 |
agaaggttactctttaggccctccatatctctttaggccccctaaag |
1014 |
Q |
| |
|
||||||||||| ||||| ||| ||||||||||||||||| ||||||| |
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|
| T |
19593389 |
agaaggttactttttagaccccccatatctctttaggcctcctaaag |
19593435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 967 - 1004
Target Start/End: Complemental strand, 19753894 - 19753857
Alignment:
| Q |
967 |
aagaaggttactctttaggccctccatatctctttagg |
1004 |
Q |
| |
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|||||||||||| ||||||||| ||||||||||||||| |
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| T |
19753894 |
aagaaggttactttttaggccccccatatctctttagg |
19753857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 999 - 1134
Target Start/End: Original strand, 25197497 - 25197644
Alignment:
| Q |
999 |
tttaggccccctaaagtgaccaaattaacctttgtg----------tatataaattctgaacaatccggtatgtatctaccggaggaccattttgctcat |
1088 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||| ||||||| ||| ||| | |||| ||| ||||||| ||||||| ||||||||||| |
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| T |
25197497 |
tttaggccccctaaagtgacgaaagtaacctttgtgacgtgtgtggtatataagttccgaatagtccgatatttatctactggaggacaattttgctcat |
25197596 |
T |
|
| Q |
1089 |
--gaaaaaacataccaaacagacttcttttatattacaccatttacca |
1134 |
Q |
| |
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|| | ||||| ||||||| |||||||||| |||||||||||||||| |
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|
| T |
25197597 |
atgagagaacattccaaacatacttcttttacattacaccatttacca |
25197644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 967 - 1014
Target Start/End: Original strand, 18616280 - 18616327
Alignment:
| Q |
967 |
aagaaggttactctttaggccctccatatctctttaggccccctaaag |
1014 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||||||| |
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|
| T |
18616280 |
aagaaggttactttttaggccccccatatctctttaggccccctaaag |
18616327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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