View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7061_low_11 (Length: 460)

Name: NF7061_low_11
Description: NF7061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7061_low_11
NF7061_low_11
[»] chr4 (17 HSPs)
chr4 (208-443)||(7051417-7051652)
chr4 (16-141)||(7051232-7051357)
chr4 (16-141)||(7025248-7025373)
chr4 (316-443)||(7018898-7019025)
chr4 (307-443)||(7044435-7044570)
chr4 (316-443)||(7001161-7001288)
chr4 (307-443)||(6992536-6992672)
chr4 (316-443)||(7011254-7011381)
chr4 (316-443)||(7037687-7037814)
chr4 (17-141)||(7000964-7001088)
chr4 (316-443)||(7025866-7025993)
chr4 (17-141)||(6992164-6992288)
chr4 (17-120)||(7009951-7010054)
chr4 (17-123)||(7036575-7036681)
chr4 (17-120)||(7044241-7044344)
chr4 (46-141)||(7018017-7018113)
chr4 (212-291)||(7025496-7025575)
[»] chr3 (1 HSPs)
chr3 (385-437)||(46185251-46185303)


Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 208 - 443
Target Start/End: Original strand, 7051417 - 7051652
Alignment:
Q  208 cattgagttaaatcaataattataatatgatatgtttttatatggcgtcaaatacatcggtaatttttagatgttcaaataacaaaataaatggctgtgt 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  7051417 cattgagttaaatcaataattataatatgatatgtttttatatggcgtcaaatacatccgtaatttttagatgttcaaataacaaaataaatggctgtgt 7051516  T
Q  308 atattttcgataggtacgtggggttaggggaaacagatgacgacatgcaagtgttctattattttgttaagtcagcaaataatcctcagaaagatcctct 407  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7051517 atattttcgataggtacttggggttaggggaaacagatgacgacatgcaagtgttctattattttgttaagtcagaaaataatcctcagaaagatcctct 7051616  T
Q  408 tatgctttggttatctggtggtcctggttgttcttc 443  Q
    ||||||||||||||||||||||||||| ||||||||    
T  7051617 tatgctttggttatctggtggtcctggctgttcttc 7051652  T

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Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 7051232 - 7051357
Alignment:
Q  16 cactttttagtttgcatatgttaactcctcttgaagcttccggctcaagagttgaacaccttcctggttttcaagggccgctcccttttgaacttgaaac 115  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7051232 cactttttagtttgcatatgttaactcctcttgaagcttctggctcaagagttgaacaccttcctggttttcaagggccgctcccttttgaacttgaaac 7051331  T
Q  116 ggggtgagagcaatcataatcattcc 141  Q
    |||||||| |||||| ||||||||||    
T  7051332 ggggtgagggcaatcctaatcattcc 7051357  T

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Target: chr4; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 7025248 - 7025373
Alignment:
Q  16 cactttttagtttgcatatgttaactcctcttgaagcttccggctcaagagttgaacaccttcctggttttcaagggccgctcccttttgaacttgaaac 115  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7025248 cactttttagtttgcatatgttaactcctcttgaagcttatggctcaaaggttgaacaccttcctggttttcaagggccactcccttttgaacttgaaac 7025347  T
Q  116 ggggtgagagcaatcataatcattcc 141  Q
    |||||||| |||||| ||||||||||    
T  7025348 ggggtgagggcaatcctaatcattcc 7025373  T

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Target: chr4; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 316 - 443
Target Start/End: Original strand, 7018898 - 7019025
Alignment:
Q  316 gataggtacgtggggttaggggaaacagatgacgacatgcaagtgttctattattttgttaagtcagcaaataatcctcagaaagatcctcttatgcttt 415  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| ||||||| |||||||||||| ||||| ||||| || ||||    
T  7018898 gataggtacgtgggattaggggaaacagatgatgacatgcaagtgttttattattttgtaaagtcagaaaataatcctcaaaaagaccctctaattcttt 7018997  T
Q  416 ggttatctggtggtcctggttgttcttc 443  Q
    ||||||||||||||||||||||||||||    
T  7018998 ggttatctggtggtcctggttgttcttc 7019025  T

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Target: chr4; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 307 - 443
Target Start/End: Original strand, 7044435 - 7044570
Alignment:
Q  307 tatattttcgataggtacgtggggttaggggaaacagatgacgacatgcaagtgttctattattttgttaagtcagcaaataatcctcagaaagatcctc 406  Q
    |||||||| |||||||||||||||||||| ||| || |||| |||||||||||||||||||||||||| || |||| |||||||||| ||||||| ||||    
T  7044435 tatatttt-gataggtacgtggggttaggagaagcaaatgatgacatgcaagtgttctattattttgtcaaatcagaaaataatcctaagaaagaccctc 7044533  T
Q  407 ttatgctttggttatctggtggtcctggttgttcttc 443  Q
    ||||||||||| |||||||||||||||||||||||||    
T  7044534 ttatgctttggatatctggtggtcctggttgttcttc 7044570  T

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Target: chr4; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 316 - 443
Target Start/End: Original strand, 7001161 - 7001288
Alignment:
Q  316 gataggtacgtggggttaggggaaacagatgacgacatgcaagtgttctattattttgttaagtcagcaaataatcctcagaaagatcctcttatgcttt 415  Q
    ||||||||||| |||||||| ||| || |||| |||||||||||||||||||||||||| || |||| || |||||||||||||||||||||||||||||    
T  7001161 gataggtacgtagggttaggagaagcaaatgatgacatgcaagtgttctattattttgtcaaatcagaaagtaatcctcagaaagatcctcttatgcttt 7001260  T
Q  416 ggttatctggtggtcctggttgttcttc 443  Q
    |||||||||| |||||||||||||||||    
T  7001261 ggttatctggaggtcctggttgttcttc 7001288  T

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Target: chr4; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 307 - 443
Target Start/End: Original strand, 6992536 - 6992672
Alignment:
Q  307 tatattttcgataggtacgtggggttaggggaaacagatgacgacatgcaagtgttctattattttgttaagtcagcaaataatcctcagaaagatcctc 406  Q
    ||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | || |||| |||  ||||||| ||||| ||||    
T  6992536 tatatatttgataggtacgtggggttaggggaaacagatgatgacatgcaagtgttctattattttatcaaatcagaaaacgatcctcaaaaagaccctc 6992635  T
Q  407 ttatgctttggttatctggtggtcctggttgttcttc 443  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  6992636 ttatgctttggttaactggtggtcctggctgttcttc 6992672  T

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Target: chr4; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 316 - 443
Target Start/End: Original strand, 7011254 - 7011381
Alignment:
Q  316 gataggtacgtggggttaggggaaacagatgacgacatgcaagtgttctattattttgttaagtcagcaaataatcctcagaaagatcctcttatgcttt 415  Q
    ||||||||||| |||||||| ||| || |||| |||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||    
T  7011254 gataggtacgtagggttaggagaagcaaatgatgacatgcaagtgttctattattttgtaaagtcagaaagtaatcctcagaaagatcctcttatgcttt 7011353  T
Q  416 ggttatctggtggtcctggttgttcttc 443  Q
    || || |||||||||||||||| |||||    
T  7011354 ggataactggtggtcctggttgctcttc 7011381  T

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Target: chr4; HSP #9
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 316 - 443
Target Start/End: Original strand, 7037687 - 7037814
Alignment:
Q  316 gataggtacgtggggttaggggaaacagatgacgacatgcaagtgttctattattttgttaagtcagcaaataatcctcagaaagatcctcttatgcttt 415  Q
    |||||||| |||||||| || ||| || |||| |||||||||||||||||||||||| | ||||||| |||||||||||||||||| |||||||||||||    
T  7037687 gataggtatgtggggttgggagaatcaaatgatgacatgcaagtgttctattattttatcaagtcagaaaataatcctcagaaagaccctcttatgcttt 7037786  T
Q  416 ggttatctggtggtcctggttgttcttc 443  Q
    ||||| ||||||||||||||||||||||    
T  7037787 ggttaactggtggtcctggttgttcttc 7037814  T

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Target: chr4; HSP #10
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 7000964 - 7001088
Alignment:
Q  17 actttttagtttgcatatgttaactcctcttgaagcttccggctcaagagttgaacaccttcctggttttcaagggccgctcccttttgaacttgaaacg 116  Q
    |||| |||||||||||||||||||||||||||||||||  |||||||  |||||||| ||||||||||||||||| || || |||||||||||||||||     
T  7000964 acttcttagtttgcatatgttaactcctcttgaagcttatggctcaaaggttgaacagcttcctggttttcaaggtccacttccttttgaacttgaaaca 7001063  T
Q  117 gggtgagagcaatcataatcattcc 141  Q
    |||||||||||||| ||||||||||    
T  7001064 gggtgagagcaatcctaatcattcc 7001088  T

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Target: chr4; HSP #11
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 316 - 443
Target Start/End: Original strand, 7025866 - 7025993
Alignment:
Q  316 gataggtacgtggggttaggggaaacagatgacgacatgcaagtgttctattattttgttaagtcagcaaataatcctcagaaagatcctcttatgcttt 415  Q
    |||||||||||||||||||| ||  || |||| |||||||||||||| || |||||||| ||||||| |||||||||||||||||| |||||||||||||    
T  7025866 gataggtacgtggggttaggagattcaaatgatgacatgcaagtgttttactattttgtaaagtcagaaaataatcctcagaaagaccctcttatgcttt 7025965  T
Q  416 ggttatctggtggtcctggttgttcttc 443  Q
    ||||| ||||||||||||| ||||||||    
T  7025966 ggttaactggtggtcctggctgttcttc 7025993  T

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Target: chr4; HSP #12
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 6992164 - 6992288
Alignment:
Q  17 actttttagtttgcatatgttaactcctcttgaagcttccggctcaagagttgaacaccttcctggttttcaagggccgctcccttttgaacttgaaacg 116  Q
    |||||||| |||| |||||||||||| | |||||||||  |||||||  |||||||| ||||||||||||||||| || || |||||||||||||||||     
T  6992164 actttttactttgaatatgttaactcatattgaagcttatggctcaaaggttgaacatcttcctggttttcaaggacctcttccttttgaacttgaaact 6992263  T
Q  117 gggtgagagcaatcataatcattcc 141  Q
    |||||||||||||| ||||||||||    
T  6992264 gggtgagagcaatcttaatcattcc 6992288  T

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Target: chr4; HSP #13
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 7009951 - 7010054
Alignment:
Q  17 actttttagtttgcatatgttaactcctcttgaagcttccggctcaagagttgaacaccttcctggttttcaagggccgctcccttttgaacttgaaacg 116  Q
    |||| |||||||||||||||||||||||||||||||||  |||||||  |||||||| |||||||||||||||||||| || |||||||||||||||||     
T  7009951 acttcttagtttgcatatgttaactcctcttgaagcttatggctcaaaggttgaacatcttcctggttttcaagggccacttccttttgaacttgaaact 7010050  T
Q  117 gggt 120  Q
    ||||    
T  7010051 gggt 7010054  T

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Target: chr4; HSP #14
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 7036575 - 7036681
Alignment:
Q  17 actttttagtttgcatatgttaactcctcttgaagcttccggctcaagagttgaacaccttcctggttttcaagggccgctcccttttgaacttgaaacg 116  Q
    |||| |||||||||||||||||||||||||||||||||  |||||||  |||||||||||||||||||||||||| || || |||||| ||||||||||     
T  7036575 acttcttagtttgcatatgttaactcctcttgaagcttatggctcaaaggttgaacaccttcctggttttcaaggacctcttccttttcaacttgaaaca 7036674  T
Q  117 gggtgag 123  Q
    |||||||    
T  7036675 gggtgag 7036681  T

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Target: chr4; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 7044241 - 7044344
Alignment:
Q  17 actttttagtttgcatatgttaactcctcttgaagcttccggctcaagagttgaacaccttcctggttttcaagggccgctcccttttgaacttgaaacg 116  Q
    ||||||||||||||| |||||||||||||||||||||||  ||||||  |||||||| ||||||||||||||||| || || || ||||||||||||||     
T  7044241 actttttagtttgcagatgttaactcctcttgaagcttctcgctcaaaggttgaacatcttcctggttttcaaggacctcttccatttgaacttgaaaca 7044340  T
Q  117 gggt 120  Q
    ||||    
T  7044341 gggt 7044344  T

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Target: chr4; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 46 - 141
Target Start/End: Original strand, 7018017 - 7018113
Alignment:
Q  46 ttgaagcttccggctcaagagttgaacaccttcctggtttt-caagggccgctcccttttgaacttgaaacggggtgagagcaatcataatcattcc 141  Q
    |||||||||  |||||||  |||||||| |||||||||||| ||||| || || |||||||||||||||||||||||||| ||||| ||||||||||    
T  7018017 ttgaagcttatggctcaaaggttgaacagcttcctggtttttcaaggaccacttccttttgaacttgaaacggggtgagaccaatcctaatcattcc 7018113  T

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Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 291
Target Start/End: Original strand, 7025496 - 7025575
Alignment:
Q  212 gagttaaatcaataattataatatgatatgtttttatatggcgtcaaatacatcggtaatttttagatgttcaaataaca 291  Q
    |||| ||||||| | |||||||||||||||||||||||||  || |||||| |  ||||| |||||||||||||||||||    
T  7025496 gagtcaaatcaacagttataatatgatatgtttttatatgatgtgaaataccttagtaatatttagatgttcaaataaca 7025575  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 437
Target Start/End: Complemental strand, 46185303 - 46185251
Alignment:
Q  385 aataatcctcagaaagatcctcttatgctttggttatctggtggtcctggttg 437  Q
    ||||||||| |  ||||||||||  ||||||||||| ||||||||||||||||    
T  46185303 aataatcctaaacaagatcctctcttgctttggttaactggtggtcctggttg 46185251  T

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