View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7061_low_14 (Length: 412)
Name: NF7061_low_14
Description: NF7061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7061_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 3 - 251
Target Start/End: Complemental strand, 37761916 - 37761666
Alignment:
| Q |
3 |
gagtttggtgtttacataacataagaggataagtttcatttcaacaaagttggtcaaaatctcaaattt--cccatgtcaatttccgacaaacaagcttc |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37761916 |
gagtttgatgtttacataacataagaggataagtttcatttcaacaaagttggtcaaaatctcaaatttttcccatgtcaatttccgacaaacaagcttc |
37761817 |
T |
|
| Q |
101 |
agttgatcctttgttaaaggatttgaatgataaaaaacaaagctttcgccgaaatgttgtgtctttagcttctgagttgaaggagcttcggagtcgtttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37761816 |
agttgatcctttgttaaaggatttgaatgataaaaaacaaagctttcgccgaaacgttgtgtctttagcttctgagttgaaggagcttcggagtcgtttg |
37761717 |
T |
|
| Q |
201 |
gcttcacaagaacaatcatatgttaaagaaactctaactagacaggtacaa |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37761716 |
gcttcacaagaacaatcatatgttaaagaaactctaactagacaggtacaa |
37761666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 336 - 385
Target Start/End: Complemental strand, 37761581 - 37761532
Alignment:
| Q |
336 |
ttgtaactttgattgtagtatcaatcattctacttttggagtttttgtgg |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37761581 |
ttgtaactttgattgtagtatcaatcattctacttttggagtttttgtgg |
37761532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 157 - 238
Target Start/End: Original strand, 3492506 - 3492587
Alignment:
| Q |
157 |
ttgtgtctttagcttctgagttgaaggagcttcggagtcgtttggcttcacaagaacaatcatatgttaaagaaactctaac |
238 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||| ||| | |||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3492506 |
ttgtgtctttagcttcagagttgaaggagattctaagttgattggtttcacaagaacaatcatattttaaagaaactctaac |
3492587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University