View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7061_low_16 (Length: 391)

Name: NF7061_low_16
Description: NF7061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7061_low_16
NF7061_low_16
[»] chr3 (11 HSPs)
chr3 (17-374)||(3745105-3745462)
chr3 (187-311)||(4142865-4142989)
chr3 (187-311)||(4158675-4158799)
chr3 (193-311)||(3753784-3753902)
chr3 (197-311)||(967869-967983)
chr3 (187-247)||(803952-804012)
chr3 (199-313)||(1931894-1932008)
chr3 (208-313)||(1937714-1937819)
chr3 (197-313)||(2679176-2679292)
chr3 (199-237)||(988687-988725)
chr3 (187-245)||(12132320-12132378)
[»] chr5 (4 HSPs)
chr5 (193-374)||(11081316-11081497)
chr5 (199-313)||(1428494-1428608)
chr5 (199-245)||(23764997-23765043)
chr5 (199-245)||(23814845-23814891)
[»] chr8 (2 HSPs)
chr8 (197-242)||(31145143-31145188)
chr8 (199-311)||(19727117-19727229)
[»] chr1 (2 HSPs)
chr1 (193-276)||(25611733-25611819)
chr1 (214-266)||(23896907-23896959)
[»] chr4 (1 HSPs)
chr4 (199-236)||(22672879-22672916)


Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 17 - 374
Target Start/End: Complemental strand, 3745462 - 3745105
Alignment:
Q  17 gaggataatctccattgaaaccgttaggagaatactcaaaccgtgtggagttagatgatgttatgtttgtgaaaatagagtccattggttcagataagag 116  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||   |||||||||||||||||||||| |||||||||||||||||    
T  3745462 gaggataatctccattgaaaccgttaggagaatattcaaaccgtgtggagttagatg---ttatgtttgtgaaaatagagtcgattggttcagataagag 3745366  T
Q  117 aatgtacttgcctaagtaacgggtgtggtcgtagagtaag---tggatgtttcgagcagtagacacatgtaactgctttttgacaaatttgggatcagat 213  Q
    ||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  3745365 aatgtacttgcctaagtaacgggtgtggtcgtagagtaagaagtggatgtttcgagcagtagacacatttaactgctttttgacaaatttgggatcagat 3745266  T
Q  214 attagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagcctatataagatttctggaatgacgtcggaaggaagagtgg 313  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3745265 attagagaattccatgacttgcaaacacatcggaattgaaggatgaacttcaccggtagcctacataagatttctggaatgacgtcggaaggaagagtgg 3745166  T
Q  314 tggacacacaaaggtgcttacttggtacaaccgagagatgattgttgatggaagttgtttc 374  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3745165 tggacacacgaaggtgcttacttggtacaaccgagagatgattgttgatggaagttgtttc 3745105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 187 - 311
Target Start/End: Original strand, 4142865 - 4142989
Alignment:
Q  187 tgctttttgacaaatttgggatcagatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagcctatataagattt 286  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||| |||||    
T  4142865 tgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaactttactggtagcctacatatgattt 4142964  T
Q  287 ctggaatgacgtcggaaggaagagt 311  Q
    |||||||||||||||||||||||||    
T  4142965 ctggaatgacgtcggaaggaagagt 4142989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 187 - 311
Target Start/End: Original strand, 4158675 - 4158799
Alignment:
Q  187 tgctttttgacaaatttgggatcagatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagcctatataagattt 286  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||| ||| |||||    
T  4158675 tgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacattggaatcggaggatgaactttaccggtagcctacatatgattt 4158774  T
Q  287 ctggaatgacgtcggaaggaagagt 311  Q
    || ||||||||||||||||||||||    
T  4158775 ctagaatgacgtcggaaggaagagt 4158799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 193 - 311
Target Start/End: Complemental strand, 3753902 - 3753784
Alignment:
Q  193 ttgacaaatttgggatcagatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagcctatataagatttctggaa 292  Q
    ||||| ||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||| |||||||||||    
T  3753902 ttgacgaattttggatcggatattagaaaattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggtaacctacataggatttctggaa 3753803  T
Q  293 tgacgtcggaaggaagagt 311  Q
    |||||||| ||||||||||    
T  3753802 tgacgtcgtaaggaagagt 3753784  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 197 - 311
Target Start/End: Complemental strand, 967983 - 967869
Alignment:
Q  197 caaatttgggatcagatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagcctatataagatttctggaatgac 296  Q
    ||||||| | |||||  |||||||||||||| |||||||| |||||||||||| | | || || ||| |||| ||||||| |||  |||||||||||||     
T  967983 caaatttagaatcagtgattagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgag 967884  T
Q  297 gtcggaaggaagagt 311  Q
     ||| ||||||||||    
T  967883 atcgaaaggaagagt 967869  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 803952 - 804012
Alignment:
Q  187 tgctttttgacaaatttgggatcagatattagagaattccatgacttgcaaacacatcgga 247  Q
    ||||||||| |||| |||| |||  |||||||||||||||||||||||||||| |||||||    
T  803952 tgctttttggcaaagttggcatcgcatattagagaattccatgacttgcaaacgcatcgga 804012  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 313
Target Start/End: Original strand, 1931894 - 1932008
Alignment:
Q  199 aatttgggatcagatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagcctatataagatttctggaatgacgt 298  Q
    |||||||| ||||| |||||||||||| ||||||||||||| || |||||||  |  | || ||| || | ||||||| | | ||||||||||||||  |    
T  1931894 aatttggggtcagagattagagaattctatgacttgcaaacgcaccggaatctcacaaggagcttcacggatagcctacagaggatttctggaatgagat 1931993  T
Q  299 cggaaggaagagtgg 313  Q
    || ||||||||||||    
T  1931994 cgaaaggaagagtgg 1932008  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 208 - 313
Target Start/End: Original strand, 1937714 - 1937819
Alignment:
Q  208 tcagatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagcctatataagatttctggaatgacgtcggaaggaa 307  Q
    ||||| |||||||||||| ||||||||||||| || |||||||  |||| ||  || |||| ||||||| | | ||||||||||||||  ||  ||||||    
T  1937714 tcagaaattagagaattctatgacttgcaaacgcaccggaatctcaggaggagtttcaccgatagcctagagaggatttctggaatgagatcaaaaggaa 1937813  T
Q  308 gagtgg 313  Q
    ||||||    
T  1937814 gagtgg 1937819  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 313
Target Start/End: Original strand, 2679176 - 2679292
Alignment:
Q  197 caaatttgggatcagatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagcctatataagatttctggaatgac 296  Q
    ||||||| ||||| || || ||||| |||||||||||||| |||||||||| | |||||| ||| || ||| ||| |||| | |  || ||||| ||||     
T  2679176 caaattttggatcggagatcagagatttccatgacttgcagacacatcggagttgaaggaggaatttcacctgtaacctagacagtatatctgggatgag 2679275  T
Q  297 gtcggaaggaagagtgg 313  Q
    |||| ||||||||||||    
T  2679276 gtcgaaaggaagagtgg 2679292  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 237
Target Start/End: Complemental strand, 988725 - 988687
Alignment:
Q  199 aatttgggatcagatattagagaattccatgacttgcaa 237  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  988725 aatttgggatcagagattaaagaattccatgacttgcaa 988687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 245
Target Start/End: Complemental strand, 12132378 - 12132320
Alignment:
Q  187 tgctttttgacaaatttgggatcagatattagagaattccatgacttgcaaacacatcg 245  Q
    ||||| ||| ||||||||||||||||||| ||||||||||| || ||||| || |||||    
T  12132378 tgcttcttggcaaatttgggatcagatatgagagaattccaggatttgcatacgcatcg 12132320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 6e-53; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 193 - 374
Target Start/End: Complemental strand, 11081497 - 11081316
Alignment:
Q  193 ttgacaaatttgggatcagatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagcctatataagatttctggaa 292  Q
    ||||| ||||||||||||||||||| |||||| || ||||||||||||||| ||||||||||||||||||| ||||||| |||| ||| ||||||| |||    
T  11081497 ttgacgaatttgggatcagatattaaagaatttcacgacttgcaaacacattggaatcgaaggatgaacttaaccggtaacctacataggatttctagaa 11081398  T
Q  293 tgacgtcggaaggaagagtggtggacacacaaaggtgcttacttggtacaaccgagagatgattgttgatggaagttgtttc 374  Q
    |||  ||||||||||||||||| ||||||| ||||||||| | || ||||| |||||| |||||||||||||||||||||||    
T  11081397 tgagatcggaaggaagagtggtagacacacgaaggtgctttcctgatacaatcgagaggtgattgttgatggaagttgtttc 11081316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 313
Target Start/End: Original strand, 1428494 - 1428608
Alignment:
Q  199 aatttgggatcagatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagcctatataagatttctggaatgacgt 298  Q
    |||||| ||||||  ||||||||||| |||| ||||||||  ||||||| | |||||| ||  || || ||||||||||  | ||||| || ||||| ||    
T  1428494 aatttgagatcagtgattagagaattacatgccttgcaaaggcatcggagttgaaggaggagtttcacgggtagcctatggaggatttgtgaaatgatgt 1428593  T
Q  299 cggaaggaagagtgg 313  Q
    || ||||||||||||    
T  1428594 cgaaaggaagagtgg 1428608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 245
Target Start/End: Original strand, 23764997 - 23765043
Alignment:
Q  199 aatttgggatcagatattagagaattccatgacttgcaaacacatcg 245  Q
    |||||||||||||| ||||||||||||||  ||||||| ||||||||    
T  23764997 aatttgggatcagaaattagagaattccaccacttgcacacacatcg 23765043  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 245
Target Start/End: Original strand, 23814845 - 23814891
Alignment:
Q  199 aatttgggatcagatattagagaattccatgacttgcaaacacatcg 245  Q
    |||||||||||||| ||||||||||||||  ||||||| ||||||||    
T  23814845 aatttgggatcagaaattagagaattccaccacttgcacacacatcg 23814891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 197 - 242
Target Start/End: Original strand, 31145143 - 31145188
Alignment:
Q  197 caaatttgggatcagatattagagaattccatgacttgcaaacaca 242  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  31145143 caaatttgggatcagatataagagaattccatgacttgcaaacaca 31145188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 199 - 311
Target Start/End: Complemental strand, 19727229 - 19727117
Alignment:
Q  199 aatttgggatcagatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagcctatataagatttctggaatgacgt 298  Q
    |||||| ||||||| |||||||||||| | ||||||||||||||||||||  | | || ||| || || |||||||||  ||  |||||||||||||  |    
T  19727229 aatttgtgatcagagattagagaattcaacgacttgcaaacacatcggaactgcaagaggaatttcacgggtagcctacttagaatttctggaatgagat 19727130  T
Q  299 cggaaggaagagt 311  Q
    || ||||||||||    
T  19727129 cgaaaggaagagt 19727117  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 193 - 276
Target Start/End: Original strand, 25611733 - 25611819
Alignment:
Q  193 ttgacaaatttgggatca---gatattagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgaccggtagccta 276  Q
    |||||||| |||||||||   |||||||||||||||||||||||||| || || | |||| |||||| |||||||||||| ||||||    
T  25611733 ttgacaaaattgggatcattcgatattagagaattccatgacttgcagacgcaacagaattgaaggaggaacttgaccgggagccta 25611819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 23896907 - 23896959
Alignment:
Q  214 attagagaattccatgacttgcaaacacatcggaatcgaaggatgaacttgac 266  Q
    ||||||||||||||||||||||| || || |||||| | |||| |||||||||    
T  23896907 attagagaattccatgacttgcagacgcagcggaattgtaggaggaacttgac 23896959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 236
Target Start/End: Original strand, 22672879 - 22672916
Alignment:
Q  199 aatttgggatcagatattagagaattccatgacttgca 236  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  22672879 aatttgcgatcagagattagagaattccatgacttgca 22672916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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