View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7061_low_2 (Length: 781)

Name: NF7061_low_2
Description: NF7061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7061_low_2
NF7061_low_2
[»] chr7 (9 HSPs)
chr7 (21-180)||(42592352-42592511)
chr7 (242-332)||(46816178-46816268)
chr7 (249-340)||(8643625-8643716)
chr7 (273-340)||(13863816-13863883)
chr7 (273-340)||(44599994-44600061)
chr7 (273-340)||(13863442-13863509)
chr7 (273-340)||(44599618-44599685)
chr7 (191-240)||(27096343-27096392)
chr7 (191-240)||(27181911-27181960)
[»] chr3 (4 HSPs)
chr3 (664-767)||(54534836-54534939)
chr3 (563-668)||(54534708-54534806)
chr3 (242-332)||(1928300-1928391)
chr3 (249-340)||(28702379-28702469)
[»] chr2 (13 HSPs)
chr2 (400-552)||(3895263-3895410)
chr2 (273-340)||(18296204-18296271)
chr2 (273-340)||(18296580-18296647)
chr2 (273-340)||(26841716-26841783)
chr2 (273-339)||(2638950-2639016)
chr2 (274-340)||(2639340-2639406)
chr2 (273-339)||(7591709-7591775)
chr2 (273-340)||(26842096-26842163)
chr2 (189-237)||(6171157-6171205)
chr2 (249-340)||(7591305-7591396)
chr2 (188-237)||(18296076-18296126)
chr2 (189-237)||(6495725-6495774)
chr2 (189-237)||(29230283-29230332)
[»] chr4 (14 HSPs)
chr4 (257-340)||(45830056-45830139)
chr4 (273-340)||(50678907-50678974)
chr4 (257-339)||(36095929-36096011)
chr4 (273-339)||(45829122-45829188)
chr4 (273-340)||(36096333-36096400)
chr4 (273-340)||(50679282-50679349)
chr4 (273-339)||(43050736-43050802)
chr4 (273-339)||(47219064-47219130)
chr4 (188-237)||(22681575-22681624)
chr4 (189-237)||(24775787-24775836)
chr4 (189-240)||(11241390-11241442)
chr4 (189-237)||(11241665-11241713)
chr4 (191-239)||(12757770-12757818)
chr4 (189-237)||(54508816-54508865)
[»] chr8 (14 HSPs)
chr8 (273-340)||(9823219-9823286)
chr8 (273-340)||(13027140-13027207)
chr8 (273-339)||(39723907-39723973)
chr8 (273-340)||(9822877-9822944)
chr8 (273-340)||(13026764-13026831)
chr8 (273-340)||(22851519-22851586)
chr8 (189-234)||(9465608-9465653)
chr8 (201-240)||(6092789-6092828)
chr8 (189-234)||(23123339-23123385)
chr8 (273-339)||(39723531-39723597)
chr8 (211-240)||(3307362-3307391)
chr8 (189-237)||(15156189-15156238)
chr8 (189-237)||(22851391-22851440)
chr8 (192-237)||(43162543-43162588)
[»] chr6 (3 HSPs)
chr6 (273-340)||(33829118-33829185)
chr6 (273-340)||(33829494-33829561)
chr6 (191-240)||(31598729-31598778)
[»] chr1 (11 HSPs)
chr1 (273-340)||(49284537-49284604)
chr1 (273-340)||(48190871-48190938)
chr1 (273-340)||(48191243-48191310)
chr1 (273-340)||(49284913-49284980)
chr1 (273-340)||(6002366-6002433)
chr1 (273-340)||(6002751-6002818)
chr1 (80-151)||(25950882-25950953)
chr1 (189-240)||(41082910-41082962)
chr1 (190-237)||(17518606-17518653)
chr1 (191-240)||(999115-999164)
chr1 (181-237)||(20480160-20480217)
[»] scaffold0328 (2 HSPs)
scaffold0328 (249-340)||(6256-6347)
scaffold0328 (273-340)||(6653-6720)
[»] chr5 (7 HSPs)
chr5 (249-340)||(11351287-11351378)
chr5 (273-339)||(18817081-18817147)
chr5 (274-340)||(18817469-18817535)
chr5 (273-332)||(31570424-31570483)
chr5 (191-237)||(31569910-31569956)
chr5 (191-237)||(10098945-10098991)
chr5 (299-340)||(11350944-11350985)
[»] scaffold0110 (2 HSPs)
scaffold0110 (189-237)||(45538-45586)
scaffold0110 (189-237)||(45811-45859)
[»] scaffold0002 (1 HSPs)
scaffold0002 (189-237)||(411924-411972)
[»] scaffold0001 (1 HSPs)
scaffold0001 (191-237)||(183367-183413)


Alignment Details
Target: chr7 (Bit Score: 144; Significance: 3e-75; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 42592511 - 42592352
Alignment:
Q  21 atcggttcagtgccattgttaaacacaaacaaatgagcttgatttgccacggctagtactggataaaccctagacaaaatgttcgttttacctccttctc 120  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42592511 atcggttcagtgccattgttaaacacaaacaaattagcttgatttgccacggctagtactggataaaccctagacaaaatgtttgttttacctccttctc 42592412  T
Q  121 caaaactttccaccactgaatgatcaatctggaaattaaaaaatcaatcattaatcaatt 180  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  42592411 caaaactttccaccactgaatgatcaatctgaaaattagaaaatcaatcattaatcaatt 42592352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 242 - 332
Target Start/End: Complemental strand, 46816268 - 46816178
Alignment:
Q  242 tttctagtttgaaggcccccatatattttgatgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatg 332  Q
    ||||| ||||||||||||||||||||||| |||||||||||| |||||||||  |  |||||||||||||| |||||||  ||||||||||    
T  46816268 tttctggtttgaaggcccccatatattttaatgatgatgtgtctaattttgattatgtgtctttatttaatttttgccaattgtgtaaatg 46816178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 249 - 340
Target Start/End: Complemental strand, 8643716 - 8643625
Alignment:
Q  249 tttgaaggcccccatatattttgatgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 340  Q
    |||||||||||| || | ||||   |||||||||||| ||||||| |||||||||| ||||||| ||||||| |||||||||| ||||||||    
T  8643716 tttgaaggcccctatgtgttttagcgatgatgtgtttgattttgatgacatgtcttcatttaatttttgccacgtgtgtaaatataattttt 8643625  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 273 - 340
Target Start/End: Complemental strand, 13863883 - 13863816
Alignment:
Q  273 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 340  Q
    ||||||||||| | ||||||| |||||||||| ||||||| ||||||| |||||||||||||||||||    
T  13863883 tgatgatgtgtctgattttgatgacatgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 13863816  T

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Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 273 - 340
Target Start/End: Complemental strand, 44600061 - 44599994
Alignment:
Q  273 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 340  Q
    ||||||||||| | ||||||| ||| |||||| ||||||||||||||| |||||||||||||||||||    
T  44600061 tgatgatgtgtctgattttgatgacgtgtcttcatttaatatttgccacgtgtgtaaatgtaattttt 44599994  T

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Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 273 - 340
Target Start/End: Original strand, 13863442 - 13863509
Alignment:
Q  273 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 340  Q
    ||||||||||| | ||||||| ||| |||||| ||||||| ||||||| |||||||||||||||||||    
T  13863442 tgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 13863509  T

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Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 273 - 340
Target Start/End: Original strand, 44599618 - 44599685
Alignment:
Q  273 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 340  Q
    ||||||||||| | ||||||| ||| |||||| ||||||| ||||||| |||||||||||||||||||    
T  44599618 tgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 44599685  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 27096392 - 27096343
Alignment:
Q  191 ttaattgtacttttcctccaatcttttgtcaattgtgcgattttgcatcc 240  Q
    ||||||| |||||||| || ||||||||||||||||| ||||||||||||    
T  27096392 ttaattgcacttttccccctatcttttgtcaattgtgtgattttgcatcc 27096343  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 27181911 - 27181960
Alignment:
Q  191 ttaattgtacttttcctccaatcttttgtcaattgtgcgattttgcatcc 240  Q
    ||||||| |||||||| || ||||||||||||||||| ||||||||||||    
T  27181911 ttaattgcacttttccccctatcttttgtcaattgtgtgattttgcatcc 27181960  T

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Target: chr3 (Bit Score: 96; Significance: 1e-46; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 664 - 767
Target Start/End: Original strand, 54534836 - 54534939
Alignment:
Q  664 ccttcaaactataccaccgaccccaccctatgttcgccgacggcgatggtgactccactgacacactactactctcttcgatctcacactccacttgctt 763  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  54534836 ccttcaaactataccaccgaccccaccctatgttcgccgacggcgacggtgactccaccgacacactactactctcttcgatctcacactccacttgctt 54534935  T
Q  764 cttc 767  Q
    ||||    
T  54534936 cttc 54534939  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 563 - 668
Target Start/End: Original strand, 54534708 - 54534806
Alignment:
Q  563 cttattgttgagaagattcttgacagcaacatccaacaatagaaccatcttgaataattcctctttatacaattccatatcctccttctcctattacgtt 662  Q
    ||||||||||||||||||||||||||| |||       |||||||||||||||| ||||||||| |||||||||||||||||||||||||| || ||| |    
T  54534708 cttattgttgagaagattcttgacagcgaca-------atagaaccatcttgaagaattcctctgtatacaattccatatcctccttctccgatcacgct 54534800  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 242 - 332
Target Start/End: Complemental strand, 1928391 - 1928300
Alignment:
Q  242 tttctagtttgaagg-cccccatatattttgatgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatg 332  Q
    ||||| ||||||||| ||||||||| ||||  ||||||||||| | ||||||| ||  |||||| ||||||| |||| ||||||||||||||    
T  1928391 tttctggtttgaagggcccccatatgttttagtgatgatgtgtctgattttgatgatgtgtcttcatttaatttttgacatgtgtgtaaatg 1928300  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 249 - 340
Target Start/End: Original strand, 28702379 - 28702469
Alignment:
Q  249 tttgaaggcccccatatattttgatgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 340  Q
    |||||||||||| || | ||||| ||||||||||| | ||||| | |||||||||| |||||||  ||||||||||| ||||||||| ||||    
T  28702379 tttgaaggcccctatgt-ttttggtgatgatgtgtctgattttaatgacatgtcttcatttaatgcttgccatgtgtctaaatgtaactttt 28702469  T

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Target: chr2 (Bit Score: 78; Significance: 6e-36; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 400 - 552
Target Start/End: Original strand, 3895263 - 3895410
Alignment:
Q  400 aagctgcagagaatgctggggagaaagctagagagtagagattatgcttatgttgcaaaggaaagatccaaggaaggagtgagttacatggctgataaga 499  Q
    |||||||||||| |||||||||||||||||||       ||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||    
T  3895263 aagctgcagagagtgctggggagaaagctaga-------gattatgcttatgatgcaaaggaaagaaccaaggaaggagcgagttacatggctgataaga 3895355  T
Q  500 caaaggaaggagctgagaaaac--aagagaagacgagtgagtttgctgggtcggc 552  Q
    |||| |||||||||||||||||    ||||||||| | ||| |||||||||||||    
T  3895356 caaaagaaggagctgagaaaacggcggagaagacgggggaggttgctgggtcggc 3895410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 273 - 340
Target Start/End: Original strand, 18296204 - 18296271
Alignment:
Q  273 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 340  Q
    ||||||||||| | ||||||| ||| |||||| ||||||||||||||| |||||||||||||||||||    
T  18296204 tgatgatgtgtctgattttgatgacgtgtcttcatttaatatttgccacgtgtgtaaatgtaattttt 18296271  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 273 - 340
Target Start/End: Complemental strand, 18296647 - 18296580
Alignment:
Q  273 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 340  Q
    ||||||||||| | ||||||| ||| |||||| ||||||| ||||||| |||||||||||||||||||    
T  18296647 tgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 18296580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 273 - 340
Target Start/End: Original strand, 26841716 - 26841783
Alignment:
Q  273 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 340  Q
    ||||||||||| | ||||||| ||| |||||| ||||||| ||||||| |||||||||||||||||||    
T  26841716 tgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 26841783  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 273 - 339
Target Start/End: Original strand, 2638950 - 2639016
Alignment:
Q  273 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaatttt 339  Q
    ||||||||||| | ||||||| ||| |||||| ||||||| ||||||| ||||||||||||||||||    
T  2638950 tgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatgtaatttt 2639016  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 274 - 340
Target Start/End: Complemental strand, 2639406 - 2639340
Alignment:
Q  274 gatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 340  Q
    |||||||||| | ||||||| ||| |||||| ||||||| ||||||| |||||||||||||||||||    
T  2639406 gatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 2639340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 273 - 339
Target Start/End: Complemental strand, 7591775 - 7591709
Alignment:
Q  273 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaatttt 339  Q
    ||||||||||| | ||||||| ||| |||||| ||||||| ||||||| ||||||||||||||||||    
T  7591775 tgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatgtaatttt 7591709  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 273 - 340
Target Start/End: Complemental strand, 26842163 - 26842096
Alignment:
Q  273 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 340  Q
    ||||||||||| | ||||||| ||| |||||| ||||||| ||| ||| |||||||||||||||||||    
T  26842163 tgatgatgtgtatgattttgatgacgtgtcttcatttaatgttttccacgtgtgtaaatgtaattttt 26842096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 6171157 - 6171205
Alignment:
Q  189 gcttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 237  Q
    ||||||||| |||||||| || ||||||||| |||||||||||||||||    
T  6171157 gcttaattgcacttttccccctatcttttgttaattgtgcgattttgca 6171205  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 249 - 340
Target Start/End: Original strand, 7591305 - 7591396
Alignment:
Q  249 tttgaaggcccccatatattttgatgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 340  Q
    |||| |||||||||| | ||||   |||||||||| | ||||||| | | |||||| ||||||| |||||||  ||||||||||||||||||    
T  7591305 tttggaggcccccatgtgttttagcgatgatgtgtctgattttgatggcgtgtcttcatttaatgtttgccacatgtgtaaatgtaattttt 7591396  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 18296076 - 18296126
Alignment:
Q  188 agcttaattgtacttttc-ctccaatcttttgtcaattgtgcgattttgca 237  Q
    |||||||||||||||||| | || |||||||| ||||||||||||||||||    
T  18296076 agcttaattgtacttttcacccctatcttttgccaattgtgcgattttgca 18296126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 6495774 - 6495725
Alignment:
Q  189 gcttaattgtacttttcctcca-atcttttgtcaattgtgcgattttgca 237  Q
    ||||||||| |||||||||||  ||||||||| |||||||||||||||||    
T  6495774 gcttaattgcacttttcctccctatcttttgtgaattgtgcgattttgca 6495725  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 29230283 - 29230332
Alignment:
Q  189 gcttaattgtacttttcctc-caatcttttgtcaattgtgcgattttgca 237  Q
    ||||||||| |||||||||| | ||||||||||||||||| |||||||||    
T  29230283 gcttaattgcacttttcctctctatcttttgtcaattgtgtgattttgca 29230332  T

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Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 257 - 340
Target Start/End: Complemental strand, 45830139 - 45830056
Alignment:
Q  257 cccccatatattttgatgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 340  Q
    ||||||||| ||||  ||||||||||| | ||||||| |||||||||| ||||||| ||||||| |||||||||||||||||||    
T  45830139 cccccatatgttttagtgatgatgtgtctgattttgatgacatgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 45830056  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 273 - 340
Target Start/End: Original strand, 50678907 - 50678974
Alignment:
Q  273 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 340  Q
    ||||||||||| | ||||||| ||| |||||| ||||||||||||||| |||||||||||||||||||    
T  50678907 tgatgatgtgtctgattttgatgacgtgtcttcatttaatatttgccacgtgtgtaaatgtaattttt 50678974  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 257 - 339
Target Start/End: Original strand, 36095929 - 36096011
Alignment:
Q  257 cccccatatattttgatgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaatttt 339  Q
    ||||||| ||||||  ||||||||||| | ||||||| ||| |||||| ||||||| ||||||| ||||||||||||||||||    
T  36095929 cccccatgtattttagtgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatgtaatttt 36096011  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 273 - 339
Target Start/End: Original strand, 45829122 - 45829188
Alignment:
Q  273 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaatttt 339  Q
    ||||||||||| | ||||||| |||||||||| ||||||| ||||||| ||||||||||||||||||    
T  45829122 tgatgatgtgtctgattttgatgacatgtcttcatttaatgtttgccacgtgtgtaaatgtaatttt 45829188  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 273 - 340
Target Start/End: Complemental strand, 36096400 - 36096333
Alignment:
Q  273 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 340  Q
    ||||||||||| | ||||||| ||| |||||| ||||||| ||||||| |||||||||||||||||||    
T  36096400 tgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 36096333  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 273 - 340
Target Start/End: Complemental strand, 50679349 - 50679282
Alignment:
Q  273 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 340  Q
    ||||||||||| | ||||||| ||| |||||| ||||||| ||||||| |||||||||||||||||||    
T  50679349 tgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 50679282  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 273 - 339
Target Start/End: Original strand, 43050736 - 43050802
Alignment:
Q  273 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaatttt 339  Q
    ||||||||||||| ||||||| ||| |||||| ||||||| |||| || ||||||||||||||||||    
T  43050736 tgatgatgtgtttgattttgatgacgtgtcttcatttaatgtttgtcacgtgtgtaaatgtaatttt 43050802  T

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Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 273 - 339
Target Start/End: Complemental strand, 47219130 - 47219064
Alignment:
Q  273 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaatttt 339  Q
    ||||||||||||| ||||||| ||| |||| | ||||||| ||||||| ||||||||||||||||||    
T  47219130 tgatgatgtgtttgattttgatgacgtgtcctcatttaatgtttgccacgtgtgtaaatgtaatttt 47219064  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 22681575 - 22681624
Alignment:
Q  188 agcttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 237  Q
    |||||||||| ||||| || || |||||||||||||||||||||||||||    
T  22681575 agcttaattgcactttcccccctatcttttgtcaattgtgcgattttgca 22681624  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 24775836 - 24775787
Alignment:
Q  189 gcttaattgtacttttcc-tccaatcttttgtcaattgtgcgattttgca 237  Q
    ||||||||| |||||||| ||| |||||||||||||||||||||||||||    
T  24775836 gcttaattgcacttttccctcctatcttttgtcaattgtgcgattttgca 24775787  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 11241390 - 11241442
Alignment:
Q  189 gcttaattgtacttttcctcca-atcttttgtcaattgtgcgattttgcatcc 240  Q
    ||||||||| |||||||||||  ||||||||| ||||||||||||||||||||    
T  11241390 gcttaattgcacttttcctccttatcttttgttaattgtgcgattttgcatcc 11241442  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 11241713 - 11241665
Alignment:
Q  189 gcttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 237  Q
    |||||||||||||||||| || |||||||| |||||||| |||||||||    
T  11241713 gcttaattgtacttttccccctatcttttgccaattgtgggattttgca 11241665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 12757770 - 12757818
Alignment:
Q  191 ttaattgtacttttcctccaatcttttgtcaattgtgcgattttgcatc 239  Q
    ||||||||||||||||| | ||  |||||||||||||||||||||||||    
T  12757770 ttaattgtacttttccttctatagtttgtcaattgtgcgattttgcatc 12757818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 54508816 - 54508865
Alignment:
Q  189 gcttaattgtactttt-cctccaatcttttgtcaattgtgcgattttgca 237  Q
    ||||||||| |||||| |||||||||||||| |||||||| |||||||||    
T  54508816 gcttaattgcactttttcctccaatcttttgccaattgtgtgattttgca 54508865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 273 - 340
Target Start/End: Complemental strand, 9823286 - 9823219
Alignment:
Q  273 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 340  Q
    ||||||||||| | ||||||| |||||||||| ||||||| ||||||| |||||||||||||||||||    
T  9823286 tgatgatgtgtctgattttgatgacatgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 9823219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 273 - 340
Target Start/End: Complemental strand, 13027207 - 13027140
Alignment:
Q  273 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 340  Q
    ||||||||||| | ||||||| ||| |||||| ||||||||||||||| |||||||||||||||||||    
T  13027207 tgatgatgtgtctgattttgatgacgtgtcttcatttaatatttgccacgtgtgtaaatgtaattttt 13027140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 273 - 339
Target Start/End: Complemental strand, 39723973 - 39723907
Alignment:
Q  273 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaatttt 339  Q
    ||||||||||||| ||||||| ||| |||||| ||||||| ||||||| ||||||||||||||||||    
T  39723973 tgatgatgtgtttgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatgtaatttt 39723907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 273 - 340
Target Start/End: Original strand, 9822877 - 9822944
Alignment:
Q  273 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 340  Q
    |||| |||||| | ||||||| ||| |||||| ||||||| |||||||||||||||||||||||||||    
T  9822877 tgatcatgtgtctgattttgatgacgtgtcttcatttaatgtttgccatgtgtgtaaatgtaattttt 9822944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 273 - 340
Target Start/End: Original strand, 13026764 - 13026831
Alignment:
Q  273 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 340  Q
    ||||||||||| | ||||||| ||| |||||| ||||||| ||||||| |||| ||||||||||||||    
T  13026764 tgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtctaaatgtaattttt 13026831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 273 - 340
Target Start/End: Original strand, 22851519 - 22851586
Alignment:
Q  273 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 340  Q
    ||||||||||| | ||||||| ||| ||| || ||||||| ||||||| |||||||||||||||||||    
T  22851519 tgatgatgtgtctgattttgatgacgtgtgttcatttaatgtttgccacgtgtgtaaatgtaattttt 22851586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 9465608 - 9465653
Alignment:
Q  189 gcttaattgtacttttcctccaatcttttgtcaattgtgcgatttt 234  Q
    ||||||||| ||||||||||| |||||||||||||||||| |||||    
T  9465608 gcttaattgcacttttcctcctatcttttgtcaattgtgcaatttt 9465653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 240
Target Start/End: Original strand, 6092789 - 6092828
Alignment:
Q  201 ttttcctccaatcttttgtcaattgtgcgattttgcatcc 240  Q
    |||||| || ||||||||||||||||||||||||||||||    
T  6092789 ttttccccctatcttttgtcaattgtgcgattttgcatcc 6092828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 23123339 - 23123385
Alignment:
Q  189 gcttaattgtacttttcc-tccaatcttttgtcaattgtgcgatttt 234  Q
    ||||||||| |||||||| ||| ||||||||||||||||||||||||    
T  23123339 gcttaattgcacttttccctcctatcttttgtcaattgtgcgatttt 23123385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 273 - 339
Target Start/End: Original strand, 39723531 - 39723597
Alignment:
Q  273 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaatttt 339  Q
    ||||||||||| |  |||||| ||| |||||| ||||||| |||||||| ||||||||| |||||||    
T  39723531 tgatgatgtgtctgtttttgatgacgtgtcttcatttaatgtttgccatatgtgtaaatataatttt 39723597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 240
Target Start/End: Original strand, 3307362 - 3307391
Alignment:
Q  211 atcttttgtcaattgtgcgattttgcatcc 240  Q
    ||||||||||||||||||||||||||||||    
T  3307362 atcttttgtcaattgtgcgattttgcatcc 3307391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 15156238 - 15156189
Alignment:
Q  189 gcttaattgtacttttcctcca-atcttttgtcaattgtgcgattttgca 237  Q
    ||||||||| |||||||| ||  |||||||||||||||||||||||||||    
T  15156238 gcttaattgcacttttcccccctatcttttgtcaattgtgcgattttgca 15156189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 22851391 - 22851440
Alignment:
Q  189 gcttaattgtacttttc-ctccaatcttttgtcaattgtgcgattttgca 237  Q
    ||||||||| ||||||| | || |||||||||||||||||||||||||||    
T  22851391 gcttaattgcacttttcacccctatcttttgtcaattgtgcgattttgca 22851440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 43162588 - 43162543
Alignment:
Q  192 taattgtacttttcctccaatcttttgtcaattgtgcgattttgca 237  Q
    |||||| |||||||| || ||||||||||||| |||||||||||||    
T  43162588 taattgcacttttccccctatcttttgtcaatcgtgcgattttgca 43162543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 273 - 340
Target Start/End: Original strand, 33829118 - 33829185
Alignment:
Q  273 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 340  Q
    ||||||||||| | ||||||| ||| |||||| ||||||||||||||| |||||||||||||||||||    
T  33829118 tgatgatgtgtctgattttgatgacgtgtcttcatttaatatttgccacgtgtgtaaatgtaattttt 33829185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 273 - 340
Target Start/End: Complemental strand, 33829561 - 33829494
Alignment:
Q  273 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 340  Q
    ||||||||||| | ||||||| ||| |||||| ||||||| ||||||| |||||||||||||||||||    
T  33829561 tgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 33829494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 31598778 - 31598729
Alignment:
Q  191 ttaattgtacttttcctccaatcttttgtcaattgtgcgattttgcatcc 240  Q
    ||||||| |||||||| || ||||||||| ||||||||||||||||||||    
T  31598778 ttaattgcacttttccccctatcttttgttaattgtgcgattttgcatcc 31598729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 273 - 340
Target Start/End: Original strand, 49284537 - 49284604
Alignment:
Q  273 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 340  Q
    ||||||||||| | ||||||| ||| |||||| ||||||||||||||| |||||||||||||||||||    
T  49284537 tgatgatgtgtctgattttgatgacgtgtcttcatttaatatttgccacgtgtgtaaatgtaattttt 49284604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 273 - 340
Target Start/End: Original strand, 48190871 - 48190938
Alignment:
Q  273 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 340  Q
    ||||||||||| | ||||||||||| |||||| ||||||| |||||||  ||||||||||||||||||    
T  48190871 tgatgatgtgtctgattttgacgacgtgtcttaatttaatgtttgccacttgtgtaaatgtaattttt 48190938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 273 - 340
Target Start/End: Complemental strand, 48191310 - 48191243
Alignment:
Q  273 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 340  Q
    ||||||||||| | ||||||| ||| |||||| ||||||| ||||||| |||||||||||||||||||    
T  48191310 tgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 48191243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 273 - 340
Target Start/End: Complemental strand, 49284980 - 49284913
Alignment:
Q  273 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 340  Q
    ||||||||||| | ||||||| ||| |||||| ||||||| ||||||| |||||||||||||||||||    
T  49284980 tgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 49284913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 273 - 340
Target Start/End: Original strand, 6002366 - 6002433
Alignment:
Q  273 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 340  Q
    ||||||||||| | ||||||| ||| ||| || ||||||| ||||||| |||||||||||||||||||    
T  6002366 tgatgatgtgtctgattttgatgacgtgttttcatttaatgtttgccacgtgtgtaaatgtaattttt 6002433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 273 - 340
Target Start/End: Complemental strand, 6002818 - 6002751
Alignment:
Q  273 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 340  Q
    ||||||||||| | ||||||| ||  |||||| ||||||| ||||||| |||||||||||||||||||    
T  6002818 tgatgatgtgtctgattttgatgatgtgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 6002751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 80 - 151
Target Start/End: Original strand, 25950882 - 25950953
Alignment:
Q  80 tggataaaccctagacaaaatgttcgttttacctccttctccaaaactttccaccactgaatgatcaatctg 151  Q
    |||||||||||||||||| || || ||||| |||||  |||||||||| |||||||| || |||||||||||    
T  25950882 tggataaaccctagacaagatatttgttttccctccagctccaaaactctccaccacagagtgatcaatctg 25950953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 41082910 - 41082962
Alignment:
Q  189 gcttaattgtactttt-cctccaatcttttgtcaattgtgcgattttgcatcc 240  Q
    |||||||||||||||| || || |||||||| |||||||||||||||||||||    
T  41082910 gcttaattgtactttttccccctatcttttgccaattgtgcgattttgcatcc 41082962  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 17518653 - 17518606
Alignment:
Q  190 cttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 237  Q
    |||||||| |||||||| || |||||||| ||||||||||||||||||    
T  17518653 cttaattgcacttttccccctatcttttgccaattgtgcgattttgca 17518606  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 999115 - 999164
Alignment:
Q  191 ttaattgtacttttcctccaatcttttgtcaattgtgcgattttgcatcc 240  Q
    ||||||| |||||||| || ||  ||||||||||||||||||||||||||    
T  999115 ttaattgcacttttccccctatagtttgtcaattgtgcgattttgcatcc 999164  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 20480160 - 20480217
Alignment:
Q  181 aagaataag-cttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 237  Q
    ||||||||| |||||||| |||||||| || ||  |||||||||||||||||||||||    
T  20480160 aagaataaggcttaattgcacttttccccctatagtttgtcaattgtgcgattttgca 20480217  T

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Target: scaffold0328 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 249 - 340
Target Start/End: Original strand, 6256 - 6347
Alignment:
Q  249 tttgaaggcccccatatattttgatgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 340  Q
    |||| |||||||||| | ||||  ||||||||||| | ||||||| ||| |||||| ||||||| |||||||  ||||||||||||||||||    
T  6256 tttggaggcccccatgtgttttagtgatgatgtgtctgattttgatgacttgtcttcatttaatgtttgccacatgtgtaaatgtaattttt 6347  T

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Target: scaffold0328; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 273 - 340
Target Start/End: Complemental strand, 6720 - 6653
Alignment:
Q  273 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 340  Q
    ||||||||||| | ||||||| ||| |||||| ||||||| ||||||| |||||||||||||||||||    
T  6720 tgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 6653  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 249 - 340
Target Start/End: Complemental strand, 11351378 - 11351287
Alignment:
Q  249 tttgaaggcccccatatattttgatgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 340  Q
    |||| |||||||||| | ||||  | ||||||||| | ||||||| ||| |||||| ||||||| ||||||| |||||||||||||||||||    
T  11351378 tttggaggcccccatgtgttttagtaatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 11351287  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 273 - 339
Target Start/End: Original strand, 18817081 - 18817147
Alignment:
Q  273 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaatttt 339  Q
    ||||||||||| | ||||||| ||| |||||| ||||||| ||||||| ||||||||||||||||||    
T  18817081 tgatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatgtaatttt 18817147  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 274 - 340
Target Start/End: Complemental strand, 18817535 - 18817469
Alignment:
Q  274 gatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatgtaattttt 340  Q
    |||||||||| | ||||||| ||| |||||| ||||||| ||||||| |||||||||||||||||||    
T  18817535 gatgatgtgtctgattttgatgacgtgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 18817469  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 273 - 332
Target Start/End: Complemental strand, 31570483 - 31570424
Alignment:
Q  273 tgatgatgtgtttaattttgacgacatgtctttatttaatatttgccatgtgtgtaaatg 332  Q
    ||||||||||| | ||||||| |||||||||| ||||||| |||| ||||||||||||||    
T  31570483 tgatgatgtgtctgattttgatgacatgtcttcatttaatttttgacatgtgtgtaaatg 31570424  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 31569910 - 31569956
Alignment:
Q  191 ttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 237  Q
    ||||||| |||||||| || |||||||||||||||||||||||||||    
T  31569910 ttaattgcacttttccccctatcttttgtcaattgtgcgattttgca 31569956  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 191 - 237
Target Start/End: Complemental strand, 10098991 - 10098945
Alignment:
Q  191 ttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 237  Q
    ||||||| ||||||||||| ||  |||||||||||||||||||||||    
T  10098991 ttaattgcacttttcctcctatagtttgtcaattgtgcgattttgca 10098945  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 299 - 340
Target Start/End: Original strand, 11350944 - 11350985
Alignment:
Q  299 tgtctttatttaatatttgccatgtgtgtaaatgtaattttt 340  Q
    |||||| ||||||| ||||||| |||||||||||||||||||    
T  11350944 tgtcttcatttaatgtttgccacgtgtgtaaatgtaattttt 11350985  T

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Target: scaffold0110 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 45538 - 45586
Alignment:
Q  189 gcttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 237  Q
    ||||||||| |||||||| || ||||||||| |||||||||||||||||    
T  45538 gcttaattgcacttttccccctatcttttgttaattgtgcgattttgca 45586  T

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Target: scaffold0110; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 45859 - 45811
Alignment:
Q  189 gcttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 237  Q
    ||||||||| |||||||| || |||||||| ||||||||||||||||||    
T  45859 gcttaattgcacttttccccctatcttttgccaattgtgcgattttgca 45811  T

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Target: scaffold0002 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 411924 - 411972
Alignment:
Q  189 gcttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 237  Q
    ||||||||| ||||| || || |||||||||||||||||||||||||||    
T  411924 gcttaattgcactttaccccctatcttttgtcaattgtgcgattttgca 411972  T

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Target: scaffold0001 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 183367 - 183413
Alignment:
Q  191 ttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 237  Q
    ||||||| |||||||| || |||||||||||||||| ||||||||||    
T  183367 ttaattgcacttttccccctatcttttgtcaattgtacgattttgca 183413  T

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