View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7061_low_24 (Length: 278)

Name: NF7061_low_24
Description: NF7061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7061_low_24
NF7061_low_24
[»] chr2 (39 HSPs)
chr2 (44-264)||(40829545-40829773)
chr2 (59-216)||(6224208-6224363)
chr2 (67-216)||(7027319-7027466)
chr2 (59-201)||(25288594-25288734)
chr2 (59-171)||(33136075-33136187)
chr2 (67-216)||(18177687-18177834)
chr2 (67-211)||(26789206-26789348)
chr2 (53-165)||(18727620-18727732)
chr2 (60-168)||(38295698-38295806)
chr2 (67-216)||(28739933-28740080)
chr2 (67-216)||(28845001-28845148)
chr2 (73-182)||(35404312-35404421)
chr2 (61-212)||(2308695-2308844)
chr2 (81-169)||(15224242-15224330)
chr2 (73-188)||(18899921-18900036)
chr2 (84-182)||(3991772-3991870)
chr2 (67-216)||(10657846-10657993)
chr2 (84-171)||(11153354-11153441)
chr2 (62-216)||(13833053-13833205)
chr2 (84-181)||(19948538-19948635)
chr2 (65-211)||(31847203-31847348)
chr2 (73-180)||(3575291-3575398)
chr2 (59-153)||(43078967-43079061)
chr2 (66-171)||(379389-379494)
chr2 (86-182)||(15926377-15926474)
chr2 (84-181)||(38413458-38413555)
chr2 (84-171)||(41978847-41978934)
chr2 (116-216)||(214945-215043)
chr2 (84-160)||(13898497-13898573)
chr2 (84-160)||(14039114-14039190)
chr2 (49-171)||(24025858-24025980)
chr2 (84-182)||(33262852-33262950)
chr2 (67-153)||(43825317-43825403)
chr2 (85-216)||(34342205-34342334)
chr2 (121-182)||(1833747-1833808)
chr2 (86-170)||(32293923-32294008)
chr2 (84-145)||(45161137-45161198)
chr2 (86-180)||(32242211-32242306)
chr2 (127-181)||(12877686-12877740)
[»] chr8 (34 HSPs)
chr8 (46-216)||(8029806-8029974)
chr8 (61-216)||(31625724-31625877)
chr8 (59-211)||(32497962-32498112)
chr8 (73-216)||(10294983-10295124)
chr8 (53-169)||(27878607-27878723)
chr8 (53-169)||(28018788-28018904)
chr8 (67-216)||(9288132-9288279)
chr8 (67-216)||(14781770-14781917)
chr8 (59-211)||(26856526-26856676)
chr8 (53-216)||(6388094-6388259)
chr8 (102-216)||(12522529-12522641)
chr8 (82-216)||(19717527-19717659)
chr8 (73-171)||(41393966-41394064)
chr8 (67-185)||(44725429-44725547)
chr8 (73-169)||(19484227-19484323)
chr8 (67-216)||(18958365-18958512)
chr8 (67-181)||(43166314-43166428)
chr8 (67-211)||(18305614-18305756)
chr8 (64-181)||(26620329-26620446)
chr8 (53-169)||(27915551-27915667)
chr8 (53-169)||(27961970-27962086)
chr8 (67-216)||(43308146-43308293)
chr8 (67-211)||(42305242-42305384)
chr8 (59-185)||(16364151-16364277)
chr8 (104-170)||(24082223-24082289)
chr8 (86-182)||(37131291-37131388)
chr8 (62-136)||(12522415-12522489)
chr8 (86-171)||(17234724-17234810)
chr8 (67-171)||(7466780-7466884)
chr8 (84-171)||(33177851-33177938)
chr8 (67-216)||(39467156-39467303)
chr8 (84-145)||(28317075-28317136)
chr8 (86-181)||(24067106-24067202)
chr8 (53-113)||(42423258-42423318)
[»] chr3 (37 HSPs)
chr3 (52-216)||(4962703-4962865)
chr3 (53-171)||(16155174-16155292)
chr3 (59-216)||(20833311-20833466)
chr3 (73-211)||(21386477-21386613)
chr3 (59-216)||(48379564-48379719)
chr3 (57-216)||(26107743-26107900)
chr3 (59-206)||(50902940-50903085)
chr3 (59-216)||(51737321-51737473)
chr3 (53-203)||(33693236-33693384)
chr3 (59-216)||(7437550-7437705)
chr3 (59-216)||(44905486-44905641)
chr3 (59-216)||(52810772-52810927)
chr3 (59-216)||(54629265-54629420)
chr3 (73-188)||(49296109-49296224)
chr3 (66-188)||(8598652-8598774)
chr3 (67-216)||(37455261-37455408)
chr3 (67-211)||(36673791-36673933)
chr3 (53-182)||(49458357-49458486)
chr3 (82-216)||(52617626-52617758)
chr3 (67-211)||(23753028-23753170)
chr3 (73-211)||(39038509-39038645)
chr3 (45-211)||(7665563-7665726)
chr3 (96-216)||(17946642-17946760)
chr3 (67-211)||(31645900-31646042)
chr3 (73-169)||(22489477-22489573)
chr3 (105-189)||(43172919-43173003)
chr3 (73-188)||(53835955-53836070)
chr3 (73-216)||(18750057-18750198)
chr3 (67-206)||(40897555-40897692)
chr3 (57-211)||(50761730-50761881)
chr3 (86-181)||(25049871-25049967)
chr3 (84-181)||(9818568-9818665)
chr3 (85-188)||(42736300-42736403)
chr3 (84-153)||(47467415-47467484)
chr3 (67-153)||(34483737-34483823)
chr3 (84-181)||(37832572-37832669)
chr3 (84-181)||(40064278-40064375)
[»] chr1 (49 HSPs)
chr1 (51-216)||(28403916-28404079)
chr1 (59-216)||(5494726-5494881)
chr1 (53-188)||(47371547-47371682)
chr1 (67-216)||(45272982-45273129)
chr1 (45-180)||(32760063-32760198)
chr1 (51-167)||(42304470-42304586)
chr1 (67-216)||(6312991-6313138)
chr1 (67-216)||(25612507-25612654)
chr1 (67-216)||(29396070-29396217)
chr1 (73-171)||(35177202-35177300)
chr1 (59-216)||(46328401-46328556)
chr1 (89-216)||(49236974-49237099)
chr1 (66-188)||(4005081-4005203)
chr1 (51-212)||(25253485-25253644)
chr1 (67-216)||(51702010-51702157)
chr1 (69-169)||(1243294-1243394)
chr1 (53-216)||(3583528-3583689)
chr1 (59-171)||(49231465-49231577)
chr1 (66-188)||(9192038-9192160)
chr1 (67-216)||(15834670-15834817)
chr1 (66-188)||(51106906-51107028)
chr1 (104-216)||(9322181-9322291)
chr1 (73-169)||(41353454-41353550)
chr1 (74-169)||(5209361-5209456)
chr1 (73-188)||(8147331-8147446)
chr1 (86-211)||(52182319-52182443)
chr1 (67-181)||(18798900-18799014)
chr1 (59-216)||(38535774-38535929)
chr1 (59-216)||(38557992-38558147)
chr1 (52-169)||(48966462-48966579)
chr1 (86-188)||(49971599-49971703)
chr1 (82-216)||(8140884-8141016)
chr1 (53-188)||(15927313-15927448)
chr1 (73-188)||(26757629-26757744)
chr1 (64-169)||(49453043-49453149)
chr1 (67-211)||(25830885-25831027)
chr1 (73-169)||(11579092-11579188)
chr1 (67-180)||(48177078-48177192)
chr1 (84-181)||(7798521-7798618)
chr1 (84-171)||(33886863-33886950)
chr1 (84-171)||(33957300-33957387)
chr1 (90-181)||(3593267-3593358)
chr1 (84-160)||(34751575-34751651)
chr1 (86-180)||(1108374-1108468)
chr1 (95-171)||(27257872-27257948)
chr1 (57-171)||(51901983-51902097)
chr1 (104-181)||(18954486-18954563)
chr1 (84-153)||(34019168-34019237)
chr1 (67-139)||(29219611-29219683)
[»] chr7 (45 HSPs)
chr7 (59-211)||(8675750-8675901)
chr7 (59-216)||(29893386-29893541)
chr7 (67-216)||(29614439-29614586)
chr7 (57-216)||(7993571-7993728)
chr7 (67-216)||(510060-510207)
chr7 (67-216)||(28342725-28342872)
chr7 (67-216)||(33891878-33892025)
chr7 (59-216)||(37328321-37328476)
chr7 (67-216)||(39784521-39784668)
chr7 (59-181)||(48136864-48136986)
chr7 (60-211)||(12740789-12740938)
chr7 (61-216)||(42610584-42610737)
chr7 (59-181)||(37972513-37972635)
chr7 (59-216)||(41827742-41827897)
chr7 (82-211)||(44256414-44256541)
chr7 (61-209)||(29585935-29586081)
chr7 (67-216)||(18838824-18838971)
chr7 (67-216)||(23101705-23101852)
chr7 (69-188)||(4639862-4639981)
chr7 (73-188)||(14741419-14741534)
chr7 (67-216)||(39028501-39028648)
chr7 (67-216)||(40460358-40460505)
chr7 (59-216)||(44121569-44121724)
chr7 (104-216)||(32884185-32884295)
chr7 (59-210)||(21486115-21486264)
chr7 (114-216)||(43172121-43172221)
chr7 (67-216)||(3023348-3023495)
chr7 (67-216)||(28034492-28034639)
chr7 (81-188)||(16709428-16709533)
chr7 (81-188)||(17683664-17683769)
chr7 (86-170)||(11735194-11735279)
chr7 (61-158)||(30823108-30823205)
chr7 (59-139)||(21067869-21067949)
chr7 (51-170)||(21024077-21024196)
chr7 (95-211)||(27148817-27148931)
chr7 (124-216)||(33383088-33383178)
chr7 (84-181)||(34656605-34656702)
chr7 (95-183)||(33497107-33497195)
chr7 (84-171)||(14732298-14732385)
chr7 (73-160)||(23017013-23017100)
chr7 (86-188)||(26201794-26201897)
chr7 (84-181)||(35313557-35313654)
chr7 (67-153)||(47067185-47067271)
chr7 (84-143)||(19594248-19594307)
chr7 (84-169)||(6268513-6268598)
[»] chr4 (47 HSPs)
chr4 (59-216)||(5800380-5800535)
chr4 (61-211)||(49501165-49501313)
chr4 (61-211)||(49507230-49507378)
chr4 (59-216)||(49834464-49834619)
chr4 (59-216)||(28484311-28484467)
chr4 (51-181)||(46286709-46286839)
chr4 (67-216)||(5441818-5441965)
chr4 (59-169)||(50517205-50517315)
chr4 (63-206)||(32322492-32322634)
chr4 (73-216)||(29510061-29510202)
chr4 (82-216)||(54341558-54341690)
chr4 (51-169)||(23671347-23671465)
chr4 (67-216)||(27768480-27768627)
chr4 (67-216)||(48261494-48261641)
chr4 (67-216)||(51321272-51321419)
chr4 (73-188)||(29469156-29469271)
chr4 (51-169)||(24966492-24966610)
chr4 (59-181)||(29855965-29856087)
chr4 (67-185)||(37828068-37828186)
chr4 (85-169)||(26491130-26491214)
chr4 (73-188)||(8084202-8084317)
chr4 (73-211)||(41725534-41725670)
chr4 (84-182)||(51967276-51967374)
chr4 (59-216)||(37916217-37916360)
chr4 (67-211)||(50018613-50018755)
chr4 (73-169)||(42937406-42937502)
chr4 (67-216)||(30966981-30967128)
chr4 (104-169)||(33138812-33138877)
chr4 (86-212)||(871781-871905)
chr4 (83-216)||(23987613-23987743)
chr4 (84-171)||(9972783-9972870)
chr4 (102-216)||(32889863-32889975)
chr4 (45-180)||(55165526-55165670)
chr4 (85-171)||(23170738-23170824)
chr4 (84-181)||(6487324-6487421)
chr4 (67-211)||(32683666-32683807)
chr4 (84-181)||(40162789-40162886)
chr4 (84-181)||(54561219-54561316)
chr4 (62-181)||(8563342-8563461)
chr4 (73-211)||(54853120-54853256)
chr4 (85-181)||(56423982-56424078)
chr4 (84-182)||(26448630-26448728)
chr4 (85-139)||(29966401-29966455)
chr4 (122-180)||(40487703-40487761)
chr4 (84-181)||(14334394-14334491)
chr4 (122-171)||(41470370-41470419)
chr4 (104-169)||(46862941-46863006)
[»] scaffold0110 (1 HSPs)
scaffold0110 (59-211)||(39266-39416)
[»] chr5 (26 HSPs)
chr5 (51-216)||(5651158-5651321)
chr5 (67-211)||(37014275-37014417)
chr5 (59-216)||(4240097-4240252)
chr5 (86-188)||(16548850-16548953)
chr5 (66-188)||(7125151-7125273)
chr5 (67-216)||(39852786-39852933)
chr5 (67-216)||(13926347-13926494)
chr5 (73-188)||(28623160-28623275)
chr5 (73-181)||(1460791-1460899)
chr5 (51-216)||(29758673-29758834)
chr5 (82-216)||(4549912-4550044)
chr5 (82-216)||(5949528-5949659)
chr5 (67-216)||(13999733-13999880)
chr5 (67-216)||(40013344-40013491)
chr5 (84-181)||(2675078-2675175)
chr5 (63-211)||(29716774-29716920)
chr5 (84-160)||(21238763-21238839)
chr5 (51-216)||(34218436-34218590)
chr5 (73-159)||(37798113-37798199)
chr5 (62-171)||(33892824-33892933)
chr5 (90-182)||(34909591-34909683)
chr5 (116-189)||(21489892-21489965)
chr5 (67-142)||(1151930-1152005)
chr5 (104-171)||(25868809-25868876)
chr5 (51-153)||(31913526-31913628)
chr5 (51-180)||(16497707-16497836)
[»] scaffold1128 (1 HSPs)
scaffold1128 (64-216)||(888-1038)
[»] chr6 (25 HSPs)
chr6 (52-216)||(16438673-16438835)
chr6 (67-216)||(31896052-31896199)
chr6 (53-169)||(2606907-2607023)
chr6 (73-216)||(31067847-31067988)
chr6 (66-188)||(1463656-1463778)
chr6 (66-188)||(6788093-6788215)
chr6 (89-182)||(31535068-31535161)
chr6 (73-205)||(31975644-31975774)
chr6 (73-216)||(4200096-4200237)
chr6 (66-169)||(3000252-3000355)
chr6 (82-216)||(7497513-7497645)
chr6 (82-216)||(14262090-14262222)
chr6 (73-188)||(10113772-10113887)
chr6 (106-181)||(28900863-28900938)
chr6 (82-216)||(34758733-34758865)
chr6 (67-216)||(30384703-30384850)
chr6 (84-182)||(31996251-31996349)
chr6 (86-181)||(8779586-8779681)
chr6 (95-180)||(13461374-13461459)
chr6 (85-171)||(21199564-21199650)
chr6 (67-141)||(34773873-34773947)
chr6 (104-181)||(7835387-7835464)
chr6 (51-160)||(12028996-12029105)
chr6 (87-154)||(21010883-21010950)
chr6 (51-100)||(33641267-33641316)
[»] scaffold0042 (1 HSPs)
scaffold0042 (59-216)||(57695-57850)
[»] scaffold0013 (1 HSPs)
scaffold0013 (82-216)||(89247-89379)
[»] scaffold0543 (1 HSPs)
scaffold0543 (67-216)||(10940-11087)
[»] scaffold1504 (1 HSPs)
scaffold1504 (82-211)||(1287-1414)
[»] scaffold0573 (1 HSPs)
scaffold0573 (106-181)||(8856-8931)
[»] scaffold0383 (1 HSPs)
scaffold0383 (83-153)||(16684-16754)
[»] scaffold0152 (2 HSPs)
scaffold0152 (83-153)||(20920-20990)
scaffold0152 (83-153)||(28811-28881)
[»] scaffold0421 (1 HSPs)
scaffold0421 (84-153)||(1727-1796)
[»] scaffold0246 (2 HSPs)
scaffold0246 (62-181)||(1367-1486)
scaffold0246 (122-180)||(25642-25700)
[»] scaffold0347 (1 HSPs)
scaffold0347 (87-159)||(15132-15204)


Alignment Details
Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 39)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 44 - 264
Target Start/End: Complemental strand, 40829773 - 40829545
Alignment:
Q  44 gttagatgtaaacttggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctcc 143  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  40829773 gttagatgtaaactcggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttctattttaccagaaaccgagtttacctcc 40829674  T
Q  144 gaattaacacgattttggtacctaaaaatgtagactcgataaactttcggagagttaacactcaatttacggagc--------atggatgatattgtcgc 235  Q
    || |||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |        |||||||||||||||||    
T  40829673 gagttaacacgattttgatacctaaaaatgtagactcggtaaactctcggagagttaacactcaatttacggaacattcattgatggatgatattgtcgc 40829574  T
Q  236 agctagtctacactattagaatggaagtt 264  Q
    |||||||||||||||||||||||||||||    
T  40829573 agctagtctacactattagaatggaagtt 40829545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 59 - 216
Target Start/End: Original strand, 6224208 - 6224363
Alignment:
Q  59 ggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattt 158  Q
    |||||||||||||||||||||  |||||||||||| |||||| |||| ||||||| ||||| ||| |||||||||||| ||||  || ||||||||||||    
T  6224208 ggtcgagtttacatgagtttaccgagtgttaactcagtcaaactcgttaaaccttccgattttactagaaaccgagttcacctaagagttaacacgattt 6224307  T
Q  159 tggtacctaaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
      ||||||||||| ||| |||||||||  | ||||||||||||||||| |||| ||||    
T  6224308 gtgtacctaaaaacgtaaactcgataa--tctcggagagttaacactcgatttgcgga 6224363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 7027466 - 7027319
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  |||||||||||| |||||| |||| ||||||||| ||| ||||||||||||| |||||||| || ||||||||||||| ||||||    
T  7027466 ttacacgagtttaccgagtgttaactcagtcaaactcgttaaacctttcaattttaccagaaaccgattttacctcagagttaacacgatttttgtacct 7027367  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||||||| |||||||||  | ||||||| ||||||||| |||| ||||    
T  7027366 aaaaatgtaaactcgataa--tctcggagatttaacactcgatttgcgga 7027319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 59 - 201
Target Start/End: Complemental strand, 25288734 - 25288594
Alignment:
Q  59 ggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattt 158  Q
    ||||||||||||| |||||||| ||||||||||||  |||||  ||| ||||||| ||||| ||| |||||||||||||||||| || ||||||||||||    
T  25288734 ggtcgagtttacacgagtttatcgagtgttaactcaatcaaacccgttaaaccttccgattttactagaaaccgagtttacctcagagttaacacgattt 25288635  T
Q  159 tggtacctaaaaatgtagactcgataaactttcggagagttaa 201  Q
    | ||||||||||||||| ||||| |||  | ||||||||||||    
T  25288634 ttgtacctaaaaatgtaaactcggtaa--tctcggagagttaa 25288594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 59 - 171
Target Start/End: Complemental strand, 33136187 - 33136075
Alignment:
Q  59 ggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattt 158  Q
    |||||||||||||  ||||||  |||||||||||  ||||||||||| ||||||| ||||||||||||||| |||||||||||| || ||||||||||||    
T  33136187 ggtcgagtttacacaagtttaccgagtgttaacttagtcaaattcgttaaaccttccgattataccagaaatcgagtttacctcagagttaacacgattt 33136088  T
Q  159 tggtacctaaaaa 171  Q
    | |||||||||||    
T  33136087 ttgtacctaaaaa 33136075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 18177834 - 18177687
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  |||||||||||| |||||| |||| |||| || | ||| ||||||||||||| |||||||| || ||||||||||||| ||||||    
T  18177834 ttacacgagtttaccgagtgttaactctgtcaaactcgttaaactttccaattttaccagaaaccgattttacctcagagttaacacgatttttgtacct 18177735  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||||||| |||||||||  | ||| ||| ||||||||| |||||||||    
T  18177734 aaaaatgtaaactcgataa--tctcgaagatttaacactcgatttacgga 18177687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 67 - 211
Target Start/End: Complemental strand, 26789348 - 26789206
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| ||||||||  ||||||||||| |||||| |||| ||||||| | ||| ||||||||||||| |||||||| || ||||||||||||| ||||||    
T  26789348 ttacacgagtttatcaagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaaccgattttacctcagagttaacacgatttttgtacct 26789249  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaattt 211  Q
    ||||||||  |||||||||  | ||||||| ||||||||| ||||    
T  26789248 aaaaatgtcaactcgataa--tctcggagatttaacactcgattt 26789206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 53 - 165
Target Start/End: Original strand, 18727620 - 18727732
Alignment:
Q  53 aaacttggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaaca 152  Q
    ||||| ||||||||||||| |||||||| || |||||||||||| ||| ||||||||| ||| |||| ||||||||  ||||||||||||||| ||||||    
T  18727620 aaactcggtcgagtttacacgagtttatcgaatgttaactcggtgaaactcgtcaaactttttgattttaccagaattcgagtttacctccgagttaaca 18727719  T
Q  153 cgattttggtacc 165  Q
    || ||||||||||    
T  18727720 cggttttggtacc 18727732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 60 - 168
Target Start/End: Original strand, 38295698 - 38295806
Alignment:
Q  60 gtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgatttt 159  Q
    |||||||||||| |||||||  ||||||||||||||||||| ||||||||||||  |||| ||||||||||| | ||| ||||||||||||||| |||||    
T  38295698 gtcgagtttacacgagtttaccgagtgttaactcggtcaaactcgtcaaaccttctgattttaccagaaaccaaattttcctccgaattaacacaatttt 38295797  T
Q  160 ggtacctaa 168  Q
    | |||||||    
T  38295798 gatacctaa 38295806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 67 - 216
Target Start/End: Original strand, 28739933 - 28740080
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  |||||||||||| |||||| |||| ||||||| | ||| ||||||||||||| |||||||| || ||||||||||||| ||||||    
T  28739933 ttacacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaaccgattttacctcagagttaacacgatttttgtacct 28740032  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    |||||  || ||||| |||  | ||||||||||||||||| |||| ||||    
T  28740033 aaaaacataaactcggtaa--tctcggagagttaacactcgatttgcgga 28740080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 28845148 - 28845001
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  |||||||||||| |||||| |||| ||||||| | ||| || |||||||||| |||||||| || ||||||||||||| ||||||    
T  28845148 ttacacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttatcagaaaccgattttacctcagagttaacacgatttttgtacct 28845049  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    |||||  || |||||||||  | ||||||||||||||||| |||| ||||    
T  28845048 aaaaacataaactcgataa--tctcggagagttaacactcgatttgcgga 28845001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 73 - 182
Target Start/End: Original strand, 35404312 - 35404421
Alignment:
Q  73 gagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaat 172  Q
    |||||||| ||||||||||||||||||| ||||||||| || | ||| ||||| ||||||||||||||||  | |||||||||||| ||||||||||||     
T  35404312 gagtttatcgagtgttaactcggtcaaactcgtcaaactttccaattttaccaaaaaccgagtttacctctaagttaacacgatttcggtacctaaaaac 35404411  T
Q  173 gtagactcga 182  Q
    ||| ||||||    
T  35404412 gtaaactcga 35404421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 61 - 212
Target Start/End: Original strand, 2308695 - 2308844
Alignment:
Q  61 tcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttg 160  Q
    ||||||||||| || ||||  ||||||||||| ||||||| | ||||||| ||| |||| ||||| ||||||| ||||||||||| ||||||||||||||    
T  2308695 tcgagtttacacgattttaccgagtgttaacttggtcaaacttgtcaaactttttgattttaccacaaaccgaatttacctccgagttaacacgattttg 2308794  T
Q  161 gtacctaaaaatgtagactcgataaactttcggagagttaacactcaattta 212  Q
    |||| |||||| ||| | |  ||||||  |||| |||||||||||| |||||    
T  2308795 gtacataaaaacgtaaatttaataaac--tcggcgagttaacactcgattta 2308844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 81 - 169
Target Start/End: Complemental strand, 15224330 - 15224242
Alignment:
Q  81 tgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaa 169  Q
    |||||||||| ||||||||| ||||||||| ||||||||  |||||||| |||||||||||| || |||||||||||||||||||||||    
T  15224330 tgagtgttaattcggtcaaactcgtcaaacttttcgatttcaccagaaatcgagtttacctctgagttaacacgattttggtacctaaa 15224242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 73 - 188
Target Start/End: Original strand, 18899921 - 18900036
Alignment:
Q  73 gagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaat 172  Q
    ||||||| |||||||||||||||||||| ||||||||| || ||||| ||| ||||| ||||||||||||||| |||||||| |||| | ||||||| |     
T  18899921 gagtttactgagtgttaactcggtcaaactcgtcaaactttccgattttactagaaatcgagtttacctccgagttaacacgtttttagcacctaaacac 18900020  T
Q  173 gtagactcgataaact 188  Q
    ||| ||||| ||||||    
T  18900021 gtaaactcggtaaact 18900036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 84 - 182
Target Start/End: Complemental strand, 3991870 - 3991772
Alignment:
Q  84 gtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcga 182  Q
    ||||||||||||||||| ||||||||| ||||||||  |||| ||||||||||||||||||| |||||||| |||||  ||||||||| ||| ||||||    
T  3991870 gtgttaactcggtcaaactcgtcaaacttttcgatttcaccaaaaaccgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcga 3991772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 10657993 - 10657846
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||| |||||||||||| || ||| |||| ||||||| | ||| ||||| ||| ||| |||||||| || ||||||||||||| ||||||    
T  10657993 ttacacgagtttatcgagtgttaactcagttaaactcgttaaaccttccaattttaccaaaaatcgattttacctcagagttaacacgatttttgtacct 10657894  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||| ||| ||||| |||  | || |||||||||||||| |||||||||    
T  10657893 aaaaacgtaaactcggtaa--tctcagagagttaacactcgatttacgga 10657846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 84 - 171
Target Start/End: Original strand, 11153354 - 11153441
Alignment:
Q  84 gtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaa 171  Q
    ||||||||||||||||| ||| ||||| | |||||| ||||||||||||||||||||||||| ||||||||||||  | |||||||||    
T  11153354 gtgttaactcggtcaaactcgccaaacatctcgattttaccagaaaccgagtttacctccgagttaacacgatttcagcacctaaaaa 11153441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 62 - 216
Target Start/End: Original strand, 13833053 - 13833205
Alignment:
Q  62 cgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttgg 161  Q
    |||||||||| |||||||  |||||||||||| |||||| | || ||| |||  |||| ||| |||||  ||||||||||| || ||||||||||||| |    
T  13833053 cgagtttacacgagtttaccgagtgttaactcagtcaaacttgttaaatcttctgattttactagaaattgagtttacctcagagttaacacgatttttg 13833152  T
Q  162 tacctaaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    |||||||||| ||| |||||||||  | ||| |||||||||| ||||||| ||||    
T  13833153 tacctaaaaacgtaaactcgataa--tctcgaagagttaacattcaatttgcgga 13833205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 84 - 181
Target Start/End: Complemental strand, 19948635 - 19948538
Alignment:
Q  84 gtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcg 181  Q
    ||||||||||||||||| ||||||||| || |||||  |||| |||| |||||||||||||| |||||||| |||||  ||||||||||||| |||||    
T  19948635 gtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaaactgagtttacctccgagttaacacgtttttgccacctaaaaatgtaaactcg 19948538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 65 - 211
Target Start/End: Original strand, 31847203 - 31847348
Alignment:
Q  65 gtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtac 164  Q
    ||||||| |||||||  ||||||||| |||||| || ||||||||||||  |||| || ||||||  |||||||||||||| ||| || ||||||  |||    
T  31847203 gtttacacgagtttaccgagtgttaattcggtcgaactcgtcaaaccttctgattttatcagaaatagagtttacctccgagttaccatgattttaatac 31847302  T
Q  165 ctaaaaatgt-agactcgataaactttcggagagttaacactcaattt 211  Q
    ||||||| || | |||||||||||  ||||||||||||||||| ||||    
T  31847303 ctaaaaacgtaaaactcgataaac--tcggagagttaacactcgattt 31847348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 180
Target Start/End: Complemental strand, 3575398 - 3575291
Alignment:
Q  73 gagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaat 172  Q
    |||||||  |||||||||||| |||||| |||| ||||||| | ||| ||||||||||||| |||||||| || |||||| |||||| |||||||||||     
T  3575398 gagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaaccgattttacctcagagttaacatgatttttgtacctaaaaac 3575299  T
Q  173 gtagactc 180  Q
    ||| ||||    
T  3575298 gtaaactc 3575291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 59 - 153
Target Start/End: Complemental strand, 43079061 - 43078967
Alignment:
Q  59 ggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacac 153  Q
    ||||||||||||| |||||||| ||||||||||||  ||||| |||| |||||||  |||| || ||||||||||||||||||| || |||||||    
T  43079061 ggtcgagtttacacgagtttatcgagtgttaactcaatcaaactcgttaaaccttcggattttaacagaaaccgagtttacctcagagttaacac 43078967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 66 - 171
Target Start/End: Complemental strand, 379494 - 379389
Alignment:
Q  66 tttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacc 165  Q
    |||| |||||||||  |||||||||||| |||||| |||| || |||| ||||| || || ||||||| |||||||| || ||||||||||||| |||||    
T  379494 tttaaatgagtttaccgagtgttaactcagtcaaactcgttaagccttccgattttatcaaaaaccgaatttacctcagagttaacacgatttttgtacc 379395  T
Q  166 taaaaa 171  Q
    ||||||    
T  379394 taaaaa 379389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 86 - 182
Target Start/End: Complemental strand, 15926474 - 15926377
Alignment:
Q  86 gttaactcg-gtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcga 182  Q
    ||||||||| |||||| ||||||||| || ||||| ||||||||| |||||| |||||||| || |||||||||||||||| ||||| ||| ||||||    
T  15926474 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagttaacctccgagttgacacgattttggtaccaaaaaacgtaaactcga 15926377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 181
Target Start/End: Original strand, 38413458 - 38413555
Alignment:
Q  84 gtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcg 181  Q
    ||||||||||||||||| ||||||||| || |||||  |||| ||||||||||||||||||| || ||||| |||||  ||||||||| ||| |||||    
T  38413458 gtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaaaccgagtttacctccgagtttacacgtttttgccacctaaaaacgtaaactcg 38413555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 84 - 171
Target Start/End: Complemental strand, 41978934 - 41978847
Alignment:
Q  84 gtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaa 171  Q
    ||||||||||||||||| ||||||||| || |||||  | || |||||||||||||||||||||||||| | |||||  |||||||||    
T  41978934 gtgttaactcggtcaaactcgtcaaactttccgatttcatcaaaaaccgagtttacctccgaattaacatgtttttgccacctaaaaa 41978847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 116 - 216
Target Start/End: Original strand, 214945 - 215043
Alignment:
Q  116 gattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcgataaactttcggagagttaacactcaatttacgg 215  Q
    |||| |||||||||| ||||||||||  || ||||||||||||||||||||||||| ||| | ||| |||  | ||||| |||||||||||||||| |||    
T  214945 gattttaccagaaactgagtttaccttagagttaacacgattttggtacctaaaaacgtaaattcggtaa--tctcggaaagttaacactcaatttgcgg 215042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 160
Target Start/End: Complemental strand, 13898573 - 13898497
Alignment:
Q  84 gtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttg 160  Q
    ||||||||||||||||| ||||||||| || |||||  |||| ||| ||||||||||||||| |||||||| |||||    
T  13898573 gtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaaatcgagtttacctccgagttaacacgtttttg 13898497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 160
Target Start/End: Complemental strand, 14039190 - 14039114
Alignment:
Q  84 gtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttg 160  Q
    ||||||||||||||||| ||||||||| || |||||  |||| ||| ||||||||||||||| |||||||| |||||    
T  14039190 gtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaaatcgagtttacctccgagttaacacgtttttg 14039114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 171
Target Start/End: Complemental strand, 24025980 - 24025858
Alignment:
Q  49 atgtaaacttggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaatt 148  Q
    |||||||||  |||||||| ||| |||||||    |||||||||| ||| |||||||||||| ||  |||| ||||| |||||||||||| |||| | ||    
T  24025980 atgtaaactcagtcgagttcacacgagtttaacacgtgttaactcagtccaattcgtcaaacattctgattttaccaaaaaccgagtttatctccaagtt 24025881  T
Q  149 aacacgattttggtacctaaaaa 171  Q
    |||||| |||||  |||||||||    
T  24025880 aacacgtttttgacacctaaaaa 24025858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 182
Target Start/End: Complemental strand, 33262950 - 33262852
Alignment:
Q  84 gtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcga 182  Q
    |||||||||| |||||| ||||||||| || |||||  |||| ||||||||||||||| ||| || ||||| |||||  ||||||||| ||| ||||||    
T  33262950 gtgttaactcagtcaaactcgtcaaactttccgatttcaccaaaaaccgagtttaccttcgagtttacacgtttttgccacctaaaaacgtaaactcga 33262852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 153
Target Start/End: Complemental strand, 43825403 - 43825317
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacac 153  Q
    ||||| |||||||  |||||||||||| |||||| |||| ||||||| | ||| ||||||||||||| |||||||| || |||||||    
T  43825403 ttacacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaaccgattttacctcagagttaacac 43825317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 216
Target Start/End: Complemental strand, 34342334 - 34342205
Alignment:
Q  85 tgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcgata 184  Q
    |||||||||  || || |||||||||||| ||| | |||||||||||||||||||||  |   ||||| |  ||||||||||||||| ||| ||||| ||    
T  34342334 tgttaactcaatctaactcgtcaaaccttccgagtttaccagaaaccgagtttaccttagtgctaacatggatttggtacctaaaaacgtaaactcggta 34342235  T
Q  185 aactttcggagagttaacactcaatttacgga 216  Q
    |||  || |||||||||||||| |||| ||||    
T  34342234 aac--tcagagagttaacactcgatttgcgga 34342205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 182
Target Start/End: Original strand, 1833747 - 1833808
Alignment:
Q  121 taccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcga 182  Q
    ||||||||| ||| ||||||||| |||| ||||||||||| |||||||||| ||| ||||||    
T  1833747 taccagaaatcgaatttacctccaaattgacacgattttgttacctaaaaacgtaaactcga 1833808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 170
Target Start/End: Complemental strand, 32294008 - 32293923
Alignment:
Q  86 gttaactcg-gtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaa 170  Q
    ||||||||| |||||| ||||||||| || ||||| ||| ||||| | ||||||| || || ||||||||||||||||||| ||||    
T  32294008 gttaactcgagtcaaactcgtcaaacattccgattttacaagaaatccagtttacatcagatttaacacgattttggtaccaaaaa 32293923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 45161137 - 45161198
Alignment:
Q  84 gtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccga 145  Q
    |||||||||||||| || ||||||||| || |||||  |||| |||||||||||||||||||    
T  45161137 gtgttaactcggtcgaactcgtcaaactttccgatttcaccaaaaaccgagtttacctccga 45161198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 180
Target Start/End: Original strand, 32242211 - 32242306
Alignment:
Q  86 gttaactcg-gtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactc 180  Q
    ||||||||| |||||| |||| |||| ||  |||| ||| ||||| | |||||||||| || ||||||||||||||||| || |||||||| ||||    
T  32242211 gttaactcgagtcaaactcgttaaacattctgattttacaagaaatcaagtttacctcagagttaacacgattttggtatctcaaaatgtaaactc 32242306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 12877740 - 12877686
Alignment:
Q  127 aaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcg 181  Q
    ||||||||||||||||||| |||||||| |||||  ||||||||| ||| |||||    
T  12877740 aaaccgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcg 12877686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 46 - 216
Target Start/End: Original strand, 8029806 - 8029974
Alignment:
Q  46 tagatgtaaacttggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccga 145  Q
    |||||||||||| ||||||||||||| || ||||  ||||||||||||||||||| |||||||||||| ||||| ||||||||| |||||||| ||| ||    
T  8029806 tagatgtaaactcggtcgagtttacacgattttaccgagtgttaactcggtcaaactcgtcaaaccttccgattttaccagaaatcgagtttatctcaga 8029905  T
Q  146 attaacacgattttggtacctaaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
     ||||||||||||||||||||||| | ||| |||||||||||  ||| ||||||||||||| |||||||||    
T  8029906 gttaacacgattttggtacctaaacacgtaaactcgataaac--tcgaagagttaacactcgatttacgga 8029974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 61 - 216
Target Start/End: Complemental strand, 31625877 - 31625724
Alignment:
Q  61 tcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttg 160  Q
    ||||||||||| |||||||  |||||||||||| |||||| |||| ||||||| ||||| |||||||||||||||||||||| || ||||||| |||||     
T  31625877 tcgagtttacacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccgattttaccagaaaccgagtttacctcagagttaacacaattttt 31625778  T
Q  161 gtacctaaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||||||||||||| ||||| |||  | ||||||||||||||||| |||| ||||    
T  31625777 gtacctaaaaatgtaaactcggtaa--tctcggagagttaacactcgatttgcgga 31625724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 59 - 211
Target Start/End: Complemental strand, 32498112 - 32497962
Alignment:
Q  59 ggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattt 158  Q
    ||||||||||||| |||||||   |||||||||||  |||||| ||| ||||||| ||||| ||| |||||||||||||||||| || ||||||||||||    
T  32498112 ggtcgagtttacacgagtttacctagtgttaactcaatcaaatccgttaaaccttccgattttactagaaaccgagtttacctcagagttaacacgattt 32498013  T
Q  159 tggtacctaaaaatgtagactcgataaactttcggagagttaacactcaattt 211  Q
    | ||||||||||| ||| ||||| |||  | ||||||||||||||||||||||    
T  32498012 ttgtacctaaaaacgtaaactcggtaa--tctcggagagttaacactcaattt 32497962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 73 - 216
Target Start/End: Original strand, 10294983 - 10295124
Alignment:
Q  73 gagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaat 172  Q
    |||||||  |||||||||||| |||||| |||| ||||||| ||||| |||||||||||||||||||||| || ||||||||||| | |||||||||||     
T  10294983 gagtttaccgagtgttaactcagtcaaactcgttaaaccttccgattttaccagaaaccgagtttacctcagagttaacacgattgttgtacctaaaaac 10295082  T
Q  173 gtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||| ||||| |||  | ||||||||||||||||| |||||||||    
T  10295083 gtaaactcggtaa--tctcggagagttaacactcgatttacgga 10295124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 53 - 169
Target Start/End: Original strand, 27878607 - 27878723
Alignment:
Q  53 aaacttggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaaca 152  Q
    ||||| ||||||||||||| ||||| || ||||||||||||  ||||| |||||||||||  ||||| ||||||||||||| ||||| ||||| ||||||    
T  27878607 aaactcggtcgagtttacacgagttcatcgagtgttaactctatcaaactcgtcaaacctaccgattttaccagaaaccgaatttacatccgagttaaca 27878706  T
Q  153 cgattttggtacctaaa 169  Q
    |||||||||||||||||    
T  27878707 cgattttggtacctaaa 27878723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 53 - 169
Target Start/End: Original strand, 28018788 - 28018904
Alignment:
Q  53 aaacttggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaaca 152  Q
    ||||| ||||||||||||| ||||| || ||||||||||||  ||||| |||||||||||  ||||| ||||||||||||| ||||| ||||| ||||||    
T  28018788 aaactcggtcgagtttacacgagttcatcgagtgttaactctatcaaactcgtcaaacctaccgattttaccagaaaccgaatttacatccgagttaaca 28018887  T
Q  153 cgattttggtacctaaa 169  Q
    |||||||||||||||||    
T  28018888 cgattttggtacctaaa 28018904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 67 - 216
Target Start/End: Original strand, 9288132 - 9288279
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    |||||||||| || ||||||||||||| |||||| |||| ||||||| | ||| ||||||||||||| |||||||| || ||||||||||||| ||||||    
T  9288132 ttacatgagtatactgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaaccgattttacctcagagttaacacgatttttgtacct 9288231  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||| ||| ||||| |||  | ||| ||||||||||||| |||| ||||    
T  9288232 aaaaacgtaaactcggtaa--tctcgaagagttaacactcgatttgcgga 9288279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 67 - 216
Target Start/End: Original strand, 14781770 - 14781917
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| ||||||| ||||||||||||| |||||| |||| ||||||| | ||| ||||||||||||| |||||||| || |||||||||||||  |||||    
T  14781770 ttacacgagtttactgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaaccgattttacctcagagttaacacgatttttatacct 14781869  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||||||  |||||||||  | ||||||| ||||||||| |||| ||||    
T  14781870 aaaaatgtcaactcgataa--tctcggagatttaacactcgatttgcgga 14781917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 59 - 211
Target Start/End: Complemental strand, 26856676 - 26856526
Alignment:
Q  59 ggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattt 158  Q
    |||||| |||||| |||||||  |||||||||||| |||||| |||| |||||||  |||| |||||||||||||||||||||| || ||||||||||||    
T  26856676 ggtcgaatttacacgagtttaccgagtgttaactcagtcaaactcgttaaaccttctgattttaccagaaaccgagtttacctcagagttaacacgattt 26856577  T
Q  159 tggtacctaaaaatgtagactcgataaactttcggagagttaacactcaattt 211  Q
    | ||||||| |||  || ||||| |||  | ||||||||||||||||| ||||    
T  26856576 ttgtacctataaacataaactcggtaa--tctcggagagttaacactcgattt 26856526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 53 - 216
Target Start/End: Original strand, 6388094 - 6388259
Alignment:
Q  53 aaacttggtcgagtttacatgagtttattgagtgt----taactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaatt 148  Q
    ||||| |||| |||||||| |||||||| ||||||    ||||| ||||||| | ||||||| || ||||| ||||| |||| |||||||||||||| ||    
T  6388094 aaactcggtcaagtttacacgagtttatcgagtgtacgttaacttggtcaaacttgtcaaactttccgattttaccataaacagagtttacctccgagtt 6388193  T
Q  149 aacacgattttggtacctaaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    |||||||||||||||||||||||  || | |||||||||  |||| |||||| |||||||||| ||||    
T  6388194 aacacgattttggtacctaaaaacataaattcgataaac--tcggcgagttaccactcaatttgcgga 6388259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 102 - 216
Target Start/End: Original strand, 12522529 - 12522641
Alignment:
Q  102 tcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcgataaactttcggagagttaa 201  Q
    |||||||||||| ||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||| | |||   |||||  ||||||||||||    
T  12522529 tcgtcaaaccttccgattttaccagaaaccgagtttacctctgagttaacacgattttggtacctaaaaatgcaaacttagtaaac--tcggagagttaa 12522626  T
Q  202 cactcaatttacgga 216  Q
    ||||| |||| ||||    
T  12522627 cactcgatttgcgga 12522641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 82 - 216
Target Start/End: Original strand, 19717527 - 19717659
Alignment:
Q  82 gagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcg 181  Q
    |||||||||||| |||||  |||| ||||||| | ||| ||||||||||||| |||||||| || ||||||||||||| ||||||||||||||| |||||    
T  19717527 gagtgttaactcagtcaatctcgttaaaccttccaattttaccagaaaccgattttacctcagagttaacacgatttttgtacctaaaaatgtaaactcg 19717626  T
Q  182 ataaactttcggagagttaacactcaatttacgga 216  Q
     |||  | ||||||||||||||||| |||| ||||    
T  19717627 gtaa--tctcggagagttaacactcgatttgcgga 19717659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 73 - 171
Target Start/End: Complemental strand, 41394064 - 41393966
Alignment:
Q  73 gagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaa 171  Q
    |||||||  |||||||||  || ||||||| |||||||||||||||| || ||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  41394064 gagtttaccgagtgttaatacgatcaaatttgtcaaacctttcgattttatcagaaactgagtttacctccgaattaacacgattttgatacctaaaaa 41393966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 67 - 185
Target Start/End: Original strand, 44725429 - 44725547
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  |||||||||||| |||||| |||| ||||||| | ||| ||||||||||||| |||||||| || ||||||||||||| ||||||    
T  44725429 ttacacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaaccgattttacctcagagttaacacgatttttgtacct 44725528  T
Q  167 aaaaatgtagactcgataa 185  Q
    |||||||||  ||||||||    
T  44725529 aaaaatgtaatctcgataa 44725547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 73 - 169
Target Start/End: Complemental strand, 19484323 - 19484227
Alignment:
Q  73 gagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaa 169  Q
    ||||||| |||||||||||||||||||| ||||||||| || ||||| ||||||||| ||||||||||||||| |||||||| |||| | |||||||    
T  19484323 gagtttactgagtgttaactcggtcaaactcgtcaaactttccgattttaccagaaatcgagtttacctccgagttaacacgtttttagcacctaaa 19484227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 216
Target Start/End: Original strand, 18958365 - 18958512
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  |||||||||||| |||||  | || ||||||| | ||| ||||||||||| | |||||||| || ||||||||||||| ||||||    
T  18958365 ttacacgagtttaccgagtgttaactcagtcaatcttgttaaaccttccaattttaccagaaaccaattttacctcagagttaacacgatttttgtacct 18958464  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||||||| ||||| |||  | ||||||||||||||||| |||| ||||    
T  18958465 aaaaatgtaaactcggtaa--tctcggagagttaacactcgatttgcgga 18958512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 181
Target Start/End: Original strand, 43166314 - 43166428
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  |||||||||||| |||||| |||||||||||||| ||| ||||||||||  | |||||||| || ||||||||||||| ||||||    
T  43166314 ttacacgagtttaccgagtgttaactcagtcaaactcgtcaaacctttcaattttaccagaaacttattttacctcagagttaacacgatttttgtacct 43166413  T
Q  167 aaaaatgtagactcg 181  Q
    ||||| ||| |||||    
T  43166414 aaaaacgtaaactcg 43166428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 67 - 211
Target Start/End: Original strand, 18305614 - 18305756
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  |||||||||||| |||||| || | ||||||| | ||| ||||||||||||| |||||||| || ||||||||||||| ||||||    
T  18305614 ttacacgagtttaccgagtgttaactcagtcaaactctttaaaccttccaattttaccagaaaccgattttacctcagagttaacacgatttttgtacct 18305713  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaattt 211  Q
    ||||| |||  |||| |||  | ||||||||||||||||| ||||    
T  18305714 aaaaacgtaagctcggtaa--tctcggagagttaacactcgattt 18305756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 64 - 181
Target Start/End: Original strand, 26620329 - 26620446
Alignment:
Q  64 agtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggta 163  Q
    ||||||||||||||||| ||||||||||||| ||||| ||||||||| |||||||| || ||||||| || |||||| || | |||||||||||| | ||    
T  26620329 agtttacatgagtttatcgagtgttaactcgatcaaactcgtcaaacttttcgattttatcagaaactgaatttaccaccaagttaacacgatttcgata 26620428  T
Q  164 cctaaaaatgtagactcg 181  Q
     |||||||| || |||||    
T  26620429 tctaaaaatataaactcg 26620446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 169
Target Start/End: Original strand, 27915551 - 27915667
Alignment:
Q  53 aaacttggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaaca 152  Q
    ||||| ||||||||||||| ||||| || ||||||||||||||||||| |||||||||||  ||||| || |||||| ||| ||||  || || ||||||    
T  27915551 aaactcggtcgagtttacacgagttcatcgagtgttaactcggtcaaactcgtcaaacctaccgattttatcagaaatcgaatttaaatctgagttaaca 27915650  T
Q  153 cgattttggtacctaaa 169  Q
    |||||||||||| ||||    
T  27915651 cgattttggtacataaa 27915667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 169
Target Start/End: Original strand, 27961970 - 27962086
Alignment:
Q  53 aaacttggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaaca 152  Q
    ||||| ||||||||||||| ||||| || ||||||||||||||||||| |||||||||||  ||||| || |||||| ||| ||||  || || ||||||    
T  27961970 aaactcggtcgagtttacacgagttcatcgagtgttaactcggtcaaactcgtcaaacctaccgattttatcagaaatcgaatttaaatctgagttaaca 27962069  T
Q  153 cgattttggtacctaaa 169  Q
    |||||||||||| ||||    
T  27962070 cgattttggtacataaa 27962086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 67 - 216
Target Start/End: Original strand, 43308146 - 43308293
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  |||||||||||| |||||| | || ||||||| | ||| ||||||||||||| ||||  || || ||||||||||||||||||||    
T  43308146 ttacacgagtttaccgagtgttaactcagtcaaacttgttaaaccttccaattttaccagaaaccgattttatatcagagttaacacgattttggtacct 43308245  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||| | | |||||||||  | ||| ||||||||||||| |||| ||||    
T  43308246 aaaaacgcaaactcgataa--tctcgaagagttaacactcgatttgcgga 43308293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 211
Target Start/End: Original strand, 42305242 - 42305384
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  || ||||||||| |||||  |||| ||||||| | ||| ||||||||||||| |||||||| || |||||||||||||  |||||    
T  42305242 ttacacgagtttaccgaatgttaactcagtcaatctcgttaaaccttccaattttaccagaaaccgattttacctcagagttaacacgatttttatacct 42305341  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaattt 211  Q
    ||||| ||| ||||| |||  | ||||||||||||||||| ||||    
T  42305342 aaaaaggtaaactcggtaa--tctcggagagttaacactcgattt 42305384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 59 - 185
Target Start/End: Complemental strand, 16364277 - 16364151
Alignment:
Q  59 ggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattt 158  Q
    |||||| |||||| |||||||  ||||||||| |  |||||| |||| ||||||| ||||| ||| ||||||||| |||||||  || ||||||||||||    
T  16364277 ggtcgaatttacacgagtttaccgagtgttaatttagtcaaactcgttaaaccttccgattttactagaaaccgaatttaccttagagttaacacgattt 16364178  T
Q  159 tggtacctaaaaatgtagactcgataa 185  Q
    | ||||||||||| ||| | |||||||    
T  16364177 ttgtacctaaaaacgtaaattcgataa 16364151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 104 - 170
Target Start/End: Complemental strand, 24082289 - 24082223
Alignment:
Q  104 gtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaa 170  Q
    |||||||||||||||| ||||||||||||| |||||||| | |||||||| ||||||||||||||||    
T  24082289 gtcaaacctttcgattttaccagaaaccgaatttacctcagtattaacacaattttggtacctaaaa 24082223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 86 - 182
Target Start/End: Original strand, 37131291 - 37131388
Alignment:
Q  86 gttaactcg-gtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcga 182  Q
    ||||||||| |||||| || |||||| ||  |||| ||||||||  ||||||||||||||| || |||||||||||||||||||||||||| ||||||    
T  37131291 gttaactcgagtcaaactcttcaaacattctgattttaccagaagtcgagtttacctccgagttgacacgattttggtacctaaaaatgtaaactcga 37131388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 136
Target Start/End: Original strand, 12522415 - 12522489
Alignment:
Q  62 cgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtt 136  Q
    |||| ||||| |||||||   |||||||||||||||||| |||||||||||||| ||| ||||||||||||||||    
T  12522415 cgagcttacacgagtttaccaagtgttaactcggtcaaactcgtcaaacctttcaattttaccagaaaccgagtt 12522489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 171
Target Start/End: Complemental strand, 17234810 - 17234724
Alignment:
Q  86 gttaactcg-gtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaa 171  Q
    ||||||||| |||||| ||||||||| || ||||| ||||||||| ||||||||||||||| || | | ||||||||||||||||||    
T  17234810 gttaactcgagtcaaactcgtcaaacattccgattttaccagaaatcgagtttacctccgagttgataggattttggtacctaaaaa 17234724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 171
Target Start/End: Complemental strand, 7466884 - 7466780
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||| |||||||||||| |||||| |||| || |||| | ||| || ||||||| || |||||||| || ||||||||||||| |||| |    
T  7466884 ttacacgagtttatcgagtgttaactcagtcaaactcgttaagccttccaattttatcagaaactgattttacctcagagttaacacgatttttgtactt 7466785  T
Q  167 aaaaa 171  Q
    |||||    
T  7466784 aaaaa 7466780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 171
Target Start/End: Original strand, 33177851 - 33177938
Alignment:
Q  84 gtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaa 171  Q
    |||||||||| |||||| ||||||||| |||| |||  |||| ||| ||||||||||| | |||||||||  ||||||||||||||||    
T  33177851 gtgttaactcagtcaaactcgtcaaacatttcaatttcaccaaaaatcgagtttaccttcaaattaacacatttttggtacctaaaaa 33177938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 216
Target Start/End: Original strand, 39467156 - 39467303
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  |||||||||||| |||||| |||  ||||||| | ||| ||||||||| | | |||||||  || |||| |||||||| ||||||    
T  39467156 ttacacgagtttaccgagtgttaactcagtcaaactcgctaaaccttccaattttaccagaaatcaattttaccttagagttaatacgatttttgtacct 39467255  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||| ||| || || |||  | ||||||||||||||||| |||| ||||    
T  39467256 aaaaacgtaaacgcggtaa--tctcggagagttaacactcgatttgcgga 39467303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 28317075 - 28317136
Alignment:
Q  84 gtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccga 145  Q
    ||||||||||||||||| ||||||||| ||||||||  |||| ||| |||||||||||||||    
T  28317075 gtgttaactcggtcaaactcgtcaaacttttcgatttcaccaaaaatcgagtttacctccga 28317136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 181
Target Start/End: Complemental strand, 24067202 - 24067106
Alignment:
Q  86 gttaactcg-gtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcg 181  Q
    ||||||||| ||| || ||||||||| |  ||||| |||||||||  ||||| |||||||| || |||||||||||||||||||||| ||| |||||    
T  24067202 gttaactcgagtcgaactcgtcaaacatgccgattttaccagaaattgagttcacctccgagttgacacgattttggtacctaaaaacgtaaactcg 24067106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 42423318 - 42423258
Alignment:
Q  53 aaacttggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctt 113  Q
    ||||| ||| ||||||||| |||||||   |||||||||||||||||| ||||||||||||    
T  42423318 aaactcggtagagtttacaggagtttacccagtgttaactcggtcaaactcgtcaaacctt 42423258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 52 - 216
Target Start/End: Original strand, 4962703 - 4962865
Alignment:
Q  52 taaacttggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaac 151  Q
    |||||| |||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||| |||  |||| ||||||||||||| | |||||    
T  4962703 taaactcggtcgagtttacatgagtttaccgagtgttaactcggtcaaactcgtcaaacctttcgattttacttgaaatcgagtttacctccaagttaac 4962802  T
Q  152 acgattttggtacctaaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||||||| |||||||||| ||| |||||||||||||   |||||||||| |||||||| ||||    
T  4962803 acgattttgatacctaaaaacgtaaactcgataaactt--agagagttaacgctcaatttgcgga 4962865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 53 - 171
Target Start/End: Complemental strand, 16155292 - 16155174
Alignment:
Q  53 aaacttggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaaca 152  Q
    ||||| ||||||||||||| ||||||| |||||||||||||||||||| |||||||||||| | ||| || || |||||||||||||||| || ||||||    
T  16155292 aaactcggtcgagtttacacgagtttactgagtgttaactcggtcaaactcgtcaaaccttccaattttatcaaaaaccgagtttacctcagagttaaca 16155193  T
Q  153 cgattttggtacctaaaaa 171  Q
    |||||||||||||||||||    
T  16155192 cgattttggtacctaaaaa 16155174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 59 - 216
Target Start/End: Complemental strand, 20833466 - 20833311
Alignment:
Q  59 ggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattt 158  Q
    ||||||||||||| |||||||  |||||||||||| |||||| |||| ||||||| ||||| |||||||||| ||||||||||| || ||||||||||||    
T  20833466 ggtcgagtttacacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccgattttaccagaaactgagtttacctcagagttaacacgattt 20833367  T
Q  159 tggtacctaaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    | ||||||||||| ||| |||||||||  | || |||||||||||||| |||| ||||    
T  20833366 ttgtacctaaaaacgtaaactcgataa--tctcagagagttaacactcgatttgcgga 20833311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 73 - 211
Target Start/End: Original strand, 21386477 - 21386613
Alignment:
Q  73 gagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaat 172  Q
    |||||||  |||||| |||||||||||| ||||||||| |||||||| ||||||||| ||||||||||||  | |||||||||||||| |||||||||||    
T  21386477 gagtttaccgagtgtcaactcggtcaaactcgtcaaacttttcgattttaccagaaatcgagtttacctctaagttaacacgattttgatacctaaaaat 21386576  T
Q  173 gtagactcgataaactttcggagagttaacactcaattt 211  Q
    ||| ||||| |||||  ||||||||||||||||| ||||    
T  21386577 gtaaactcggtaaac--tcggagagttaacactcgattt 21386613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 59 - 216
Target Start/End: Complemental strand, 48379719 - 48379564
Alignment:
Q  59 ggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattt 158  Q
    |||| |||||||| |||||||  |||||||||||| |||||| |||| || |||| ||||| ||||||||| |||||||||||| |||||||||||||||    
T  48379719 ggtcaagtttacacgagtttaccgagtgttaactcagtcaaactcgttaagccttccgattttaccagaaatcgagtttacctcagaattaacacgattt 48379620  T
Q  159 tggtacctaaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    | ||||||||||| ||| ||||| |||  | ||||||||||||||||| |||| ||||    
T  48379619 ttgtacctaaaaacgtaaactcggtaa--tctcggagagttaacactcgatttgcgga 48379564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 57 - 216
Target Start/End: Complemental strand, 26107900 - 26107743
Alignment:
Q  57 ttggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgat 156  Q
    ||||||||||||||| |||||||  |||||||||||| |||||| |||| ||||||| ||||| ||||||||| |||||||||||| || |||||| |||    
T  26107900 ttggtcgagtttacacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccgattgtaccagaaatcgagtttacctcagagttaacatgat 26107801  T
Q  157 tttggtacctaaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||| ||||||||||| ||| ||||| |||  | ||||||||||| ||||| |||| ||||    
T  26107800 ttttgtacctaaaaacgtaaactcgttaa--tctcggagagttatcactcgatttgcgga 26107743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 59 - 206
Target Start/End: Original strand, 50902940 - 50903085
Alignment:
Q  59 ggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattt 158  Q
    ||||||||||||| |||||||  |||||||||||| |||||| |||| ||||||| | ||| |||||||||||||||||||||| || ||||||||||||    
T  50902940 ggtcgagtttacacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaaccgagtttacctcagagttaacacgattt 50903039  T
Q  159 tggtacctaaaaatgtagactcgataaactttcggagagttaacactc 206  Q
    | |||| |||||| ||| |||||||  | | |||||||||||||||||    
T  50903040 ttgtacataaaaacgtaaactcgat--attctcggagagttaacactc 50903085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 59 - 216
Target Start/End: Original strand, 51737321 - 51737473
Alignment:
Q  59 ggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattt 158  Q
    |||||||||||||   |||||  |||||||||||| |||||| |||| ||||||| ||||| ||| |||||||||||||||||| || ||||||||||||    
T  51737321 ggtcgagtttaca---gtttaccgagtgttaactcagtcaaactcgttaaaccttccgattttactagaaaccgagtttacctcagagttaacacgattt 51737417  T
Q  159 tggtacctaaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    | ||||||||||||||| |||||||||  | || |||||||||||||| |||| ||||    
T  51737418 ttgtacctaaaaatgtaaactcgataa--tctcagagagttaacactcgatttgcgga 51737473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 53 - 203
Target Start/End: Complemental strand, 33693384 - 33693236
Alignment:
Q  53 aaacttggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaaca 152  Q
    ||||| ||||||||||||| |||||||  ||||||||||||||||||| ||||||||||||  |||| ||||||||| ||||||||||||| | ||||||    
T  33693384 aaactcggtcgagtttacacgagtttaccgagtgttaactcggtcaaactcgtcaaaccttctgattttaccagaaatcgagtttacctccaagttaaca 33693285  T
Q  153 cgattttggtacctaaaaatgtagactcgataaactttcggagagttaaca 203  Q
    |||||||||||  |||||   || ||||| |||||  ||||||||||||||    
T  33693284 cgattttggtatgtaaaatcataaactcggtaaac--tcggagagttaaca 33693236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 59 - 216
Target Start/End: Original strand, 7437550 - 7437705
Alignment:
Q  59 ggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattt 158  Q
    ||||||||||||| |||||||  ||||||||||||||||||| ||  || ||||| ||||| ||||| |||||||||||| |||||  ||||||||||||    
T  7437550 ggtcgagtttacacgagtttaccgagtgttaactcggtcaaactcaccataccttccgattttaccaaaaaccgagtttatctccgtgttaacacgattt 7437649  T
Q  159 tggtacctaaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||||||||| | ||| ||||  |||||  ||||||||||||||||| |||| ||||    
T  7437650 tggtacctaaacaagtaaactcagtaaac--tcggagagttaacactcgatttgcgga 7437705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 59 - 216
Target Start/End: Original strand, 44905486 - 44905641
Alignment:
Q  59 ggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattt 158  Q
    ||||||||||| | |||||||  |||||||||||| ||||||||||| || ||||  |||| |||||||||||||| ||||||| |||||||||||||||    
T  44905486 ggtcgagtttatacgagtttaccgagtgttaactcagtcaaattcgttaagccttctgattttaccagaaaccgagattacctcagaattaacacgattt 44905585  T
Q  159 tggtacctaaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    | |||||||| || ||| ||||| |||  | ||||||||||||||||| |||| ||||    
T  44905586 ttgtacctaagaacgtaaactcggtaa--tctcggagagttaacactcgatttgcgga 44905641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 59 - 216
Target Start/End: Complemental strand, 52810927 - 52810772
Alignment:
Q  59 ggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattt 158  Q
    |||||||||||||  ||||||  |||||||||||| |||||| |||| ||||||| ||||| |||||||| ||||||||||||| || ||||||| ||||    
T  52810927 ggtcgagtttacacaagtttaccgagtgttaactcagtcaaactcgttaaaccttccgattttaccagaacccgagtttacctcagagttaacacaattt 52810828  T
Q  159 tggtacctaaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    | ||||||||||| ||| ||||| |||  | ||||||||||||||||| |||| ||||    
T  52810827 ttgtacctaaaaacgtaaactcggtaa--tctcggagagttaacactcgatttgcgga 52810772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 59 - 216
Target Start/End: Complemental strand, 54629420 - 54629265
Alignment:
Q  59 ggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattt 158  Q
    ||||||||||||| ||||||| ||||||||||||   ||||| |||| |||||||||| || || |||||| |||||||||||| || ||||||||||||    
T  54629420 ggtcgagtttacacgagtttactgagtgttaactgaatcaaactcgttaaacctttcgcttttatcagaaatcgagtttacctcagagttaacacgattt 54629321  T
Q  159 tggtacctaaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    | ||||||||||| ||| ||||| |||  | || ||||||||||||||||||| ||||    
T  54629320 ttgtacctaaaaacgtaaactcggtaa--tctcagagagttaacactcaatttgcgga 54629265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 73 - 188
Target Start/End: Complemental strand, 49296224 - 49296109
Alignment:
Q  73 gagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaat 172  Q
    ||||||| |||||||||||||||||||| ||||||||| |||||||| ||||||||| ||||||||||||||| |||||||| |||| | ||||||| |     
T  49296224 gagtttactgagtgttaactcggtcaaactcgtcaaacttttcgattttaccagaaatcgagtttacctccgagttaacacgtttttagcacctaaacac 49296125  T
Q  173 gtagactcgataaact 188  Q
    ||| ||||| ||||||    
T  49296124 gtaaactcggtaaact 49296109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 66 - 188
Target Start/End: Complemental strand, 8598774 - 8598652
Alignment:
Q  66 tttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacc 165  Q
    |||||| ||||||| |||||||||||||||||||| ||||||||| || ||||| ||||||||| ||||||||||||||| |||||||| |||| | |||    
T  8598774 tttacacgagtttactgagtgttaactcggtcaaactcgtcaaactttccgattttaccagaaatcgagtttacctccgagttaacacgtttttagcacc 8598675  T
Q  166 taaaaatgtagactcgataaact 188  Q
    |||| | ||| ||||| ||||||    
T  8598674 taaacacgtaaactcggtaaact 8598652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 37455408 - 37455261
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| ||||||| ||||||||||||| |||||| |||| ||||||| | ||| ||||||||||||| |||||||| || ||||||||||||| ||||||    
T  37455408 ttacacgagtttagtgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaaccgattttacctcagagttaacacgatttttgtacct 37455309  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||| |||  |||| |||  | ||||||||||||||||| |||| ||||    
T  37455308 aaaaacgtaagctcggtaa--tctcggagagttaacactcgatttgcgga 37455261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 67 - 211
Target Start/End: Original strand, 36673791 - 36673933
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||| |||||||||||| |||||| |||| ||||||| | ||| ||||||||||||| |||||||| || ||||||||||||| |||| |    
T  36673791 ttacacgagtttatcgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaaccgattttacctcagagttaacacgatttttgtactt 36673890  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaattt 211  Q
    ||||||||  |||||||||  | ||||||| ||||||||| ||||    
T  36673891 aaaaatgtcaactcgataa--tctcggagatttaacactcgattt 36673933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 53 - 182
Target Start/End: Complemental strand, 49458486 - 49458357
Alignment:
Q  53 aaacttggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaaca 152  Q
    ||||| ||||||||||||| ||||||| |||||||||| | ||||||| |||||||||||| ||||| ||||||||| ||||||||| || || ||||||    
T  49458486 aaactcggtcgagtttacacgagtttactgagtgttaatttggtcaaactcgtcaaaccttccgattttaccagaaatcgagtttacttcagagttaaca 49458387  T
Q  153 cgattttggtacctaaaaatgtagactcga 182  Q
    | |||||| |||||||| | ||| ||||||    
T  49458386 caattttgatacctaaacacgtaaactcga 49458357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 82 - 216
Target Start/End: Original strand, 52617626 - 52617758
Alignment:
Q  82 gagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcg 181  Q
    |||||||||||  |||||| |||| ||||||| ||||| |||||||||||||||||||||| || ||||||||||||| ||||||||||| ||| | |||    
T  52617626 gagtgttaacttagtcaaactcgttaaaccttccgattttaccagaaaccgagtttacctcagagttaacacgatttttgtacctaaaaacgtaaattcg 52617725  T
Q  182 ataaactttcggagagttaacactcaatttacgga 216  Q
    ||||  | || |||||||||||||| |||| ||||    
T  52617726 ataa--tctcagagagttaacactcgatttgcgga 52617758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 67 - 211
Target Start/End: Original strand, 23753028 - 23753170
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  |||||||||||| |||||| | || ||||||| | ||| ||||| ||||||| |||||||| || ||||||||||||| ||||||    
T  23753028 ttacacgagtttaccgagtgttaactcagtcaaactggttaaaccttccaattttaccaaaaaccgattttacctcagagttaacacgatttttgtacct 23753127  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaattt 211  Q
    ||||||||| ||||| |||  | ||||||||||||||||| ||||    
T  23753128 aaaaatgtaaactcggtaa--tctcggagagttaacactcgattt 23753170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 73 - 211
Target Start/End: Complemental strand, 39038645 - 39038509
Alignment:
Q  73 gagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaat 172  Q
    |||||||  |||||||||||  |||||| |||| ||||||| ||||| |||||||||||||||||||||| || ||||||| ||||| |||||||||||     
T  39038645 gagtttaccgagtgttaacttagtcaaactcgttaaaccttccgattttaccagaaaccgagtttacctcagagttaacaccatttttgtacctaaaaac 39038546  T
Q  173 gtagactcgataaactttcggagagttaacactcaattt 211  Q
    ||| | |||||||  | || |||||||||||||| ||||    
T  39038545 gtaaattcgataa--tctcagagagttaacactcgattt 39038509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 45 - 211
Target Start/End: Complemental strand, 7665726 - 7665563
Alignment:
Q  45 ttagatgtaaacttggtcgagtttacatgagtttattgagtgttaactcg-gtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctcc 143  Q
    ||||| ||||||| ||||||||||||| |||||||  ||||  ||||||  |||||| ||||||||  || ||||| ||||| ||| |||||||||||||    
T  7665726 ttagacgtaaactcggtcgagtttacacgagtttaccgagt--taactctagtcaaactcgtcaaatattccgattttaccaaaaatcgagtttacctcc 7665629  T
Q  144 gaattaacacgattttggtacctaaaaatgtagactcgataaactttcggagagttaacactcaattt 211  Q
    || ||||||||||||||||| ||||||| ||| ||| | ||||  ||||| |||||||||||| ||||    
T  7665628 gagttaacacgattttggtagctaaaaacgtaaactaggtaaa--ttcggcgagttaacactcgattt 7665563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 96 - 216
Target Start/End: Complemental strand, 17946760 - 17946642
Alignment:
Q  96 tcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcgataaactttcggag 195  Q
    ||||| |||| ||||||| ||||| |||||||||||||||||||||| || |||||| |||||| ||||||||||| ||| |||||||||  | ||||||    
T  17946760 tcaaactcgttaaaccttccgattttaccagaaaccgagtttacctcagagttaacatgatttttgtacctaaaaacgtaaactcgataa--tctcggag 17946663  T
Q  196 agttaacactcaatttacgga 216  Q
    | ||||||||| |||| ||||    
T  17946662 aattaacactcgatttgcgga 17946642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 67 - 211
Target Start/End: Original strand, 31645900 - 31646042
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  |||||||||||| |||||| || | ||||||| | ||| ||||||||||||| |||||||| || ||||||||||||| ||||||    
T  31645900 ttacacgagtttaccgagtgttaactcagtcaaactctttaaaccttccaattttaccagaaaccgattttacctcagagttaacacgatttttgtacct 31645999  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaattt 211  Q
    ||||| |||  |||| |||  | ||||||||||||||||| ||||    
T  31646000 aaaaacgtaagctcggtaa--tctcggagagttaacactcgattt 31646042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 169
Target Start/End: Original strand, 22489477 - 22489573
Alignment:
Q  73 gagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaa 169  Q
    ||||||| |||||||||||||||||||| |||| ||||||| ||||| ||||||||| ||||||||| || || |||||||| |||||| |||||||    
T  22489477 gagtttactgagtgttaactcggtcaaactcgttaaaccttccgattttaccagaaatcgagtttacatctgatttaacacgtttttggcacctaaa 22489573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 105 - 189
Target Start/End: Complemental strand, 43173003 - 43172919
Alignment:
Q  105 tcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcgataaactt 189  Q
    ||||||||||||||| ||||||||| ||||||||||||||| | ||||||||||||||||||||| |  || |||||||||||||    
T  43173003 tcaaacctttcgattttaccagaaatcgagtttacctccgagtcaacacgattttggtacctaaacacataaactcgataaactt 43172919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 73 - 188
Target Start/End: Complemental strand, 53836070 - 53835955
Alignment:
Q  73 gagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaat 172  Q
    ||||||| |||||||||||||||||||| ||||||||| || ||||| ||||||||| | ||||||||||| | |||||||| |||| | ||||||| |     
T  53836070 gagtttactgagtgttaactcggtcaaactcgtcaaactttccgattttaccagaaatcaagtttacctccaagttaacacgtttttagcacctaaacac 53835971  T
Q  173 gtagactcgataaact 188  Q
    ||| ||||| ||||||    
T  53835970 gtaaactcggtaaact 53835955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 216
Target Start/End: Complemental strand, 18750198 - 18750057
Alignment:
Q  73 gagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaat 172  Q
    |||||||  |||||||||||| |||||| |||| || |||| | ||| |||||||||||||||||||||| || |||||| |||||| |||||||||||     
T  18750198 gagtttaccgagtgttaactcagtcaaactcgttaagccttccaattttaccagaaaccgagtttacctcagagttaacatgatttttgtacctaaaaac 18750099  T
Q  173 gtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||| ||||  |||  | || |||||||||||||| |||| ||||    
T  18750098 gtaaactcagtaa--tatcagagagttaacactcgatttgcgga 18750057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 67 - 206
Target Start/End: Complemental strand, 40897692 - 40897555
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  |||||||||||| |||||| |||| ||||||| | ||| || |||||||||| |||||||| || ||||||||||||| ||||||    
T  40897692 ttacacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttatcagaaaccgattttacctcagagttaacacgatttttgtacct 40897593  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactc 206  Q
    ||||  ||| | ||| |||  | |||||||||||||||||    
T  40897592 aaaatcgtaaattcggtaa--tctcggagagttaacactc 40897555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 211
Target Start/End: Original strand, 50761730 - 50761881
Alignment:
Q  57 ttggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgat 156  Q
    ||||||||||| ||| |||||||   ||||||||||| |||||| |||| ||||||| | |||  |||||||| | | |||||||| || ||||||||||    
T  50761730 ttggtcgagtt-acacgagtttacctagtgttaactcagtcaaactcgttaaaccttccaatttcaccagaaatctattttacctcagagttaacacgat 50761828  T
Q  157 tttggtacctaaaaatgtagactcgataaactttcggagagttaacactcaattt 211  Q
    ||| ||||||||||| ||| ||||| |||  | ||||||||||||||||| ||||    
T  50761829 ttttgtacctaaaaacgtaaactcggtaa--tctcggagagttaacactcgattt 50761881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 181
Target Start/End: Complemental strand, 25049967 - 25049871
Alignment:
Q  86 gttaactcg-gtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcg 181  Q
    ||||||||| |||||| || |||||| || ||||| ||| ||||| ||||||||||||||| || |||||||||||||||||||||| ||| |||||    
T  25049967 gttaactcgagtcaaactcatcaaacattccgattttactagaaatcgagtttacctccgagttgacacgattttggtacctaaaaacgtaaactcg 25049871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 181
Target Start/End: Original strand, 9818568 - 9818665
Alignment:
Q  84 gtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcg 181  Q
    ||||| ||||||||||| ||||||||| || |||||  |||| ||| ||||||||||||||| |||||||| |||||  ||||||||| ||| |||||    
T  9818568 gtgttcactcggtcaaactcgtcaaactttccgatttcaccaaaaatcgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcg 9818665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 188
Target Start/End: Complemental strand, 42736403 - 42736300
Alignment:
Q  85 tgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcgata 184  Q
    |||||||||| ||||| ||||||||| ||| |||| ||||||||||  |||||| |||    ||||||||||||||||| ||||||| | | ||||||||    
T  42736403 tgttaactcgatcaaactcgtcaaactttttgattttaccagaaactaagtttatctcaatgttaacacgattttggtatctaaaaacgcaaactcgata 42736304  T
Q  185 aact 188  Q
    ||||    
T  42736303 aact 42736300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 153
Target Start/End: Original strand, 47467415 - 47467484
Alignment:
Q  84 gtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacac 153  Q
    ||||||||||||||||| ||||||||  ||||||||  |||| ||||||||||||||| ||| |||||||    
T  47467415 gtgttaactcggtcaaactcgtcaaaattttcgatttcaccaaaaaccgagtttaccttcgagttaacac 47467484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 153
Target Start/End: Original strand, 34483737 - 34483823
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacac 153  Q
    ||||| |||||||  |||||||||||| |||||| |||| |||||||   ||| ||||||||||||| |||||||| || |||||||    
T  34483737 ttacacgagtttaccgagtgttaactcagtcaaactcgttaaaccttcaaattttaccagaaaccgattttacctcagagttaacac 34483823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 181
Target Start/End: Complemental strand, 37832669 - 37832572
Alignment:
Q  84 gtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcg 181  Q
    ||||||||||||||||| ||||||||| ||  ||||  |||| ||||  |||||| ||||||||| ||||| |||||  ||||||||| ||| |||||    
T  37832669 gtgttaactcggtcaaactcgtcaaactttctgatttcaccaaaaactaagtttatctccgaatttacacgtttttgccacctaaaaacgtaaactcg 37832572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 181
Target Start/End: Complemental strand, 40064375 - 40064278
Alignment:
Q  84 gtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcg 181  Q
    ||||||||| ||||||||||||||||| ||||||||  |||| ||||  | ||||||||| | || ||||| |||||  ||||||||| ||| |||||    
T  40064375 gtgttaacttggtcaaattcgtcaaacttttcgatttcaccaaaaactaaatttacctccaagtttacacgtttttgccacctaaaaacgtaaactcg 40064278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 9e-42; HSPs: 49)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 51 - 216
Target Start/End: Original strand, 28403916 - 28404079
Alignment:
Q  51 gtaaacttggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaa 150  Q
    ||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||| ||  ||||||||| ||||||| | | ||||    
T  28403916 gtaaactcggtcgagtttacatgagtttaccgagtgttaactcggtcaaattcgtcaaacatttcgattttattagaaaccgaatttaccttcaagttaa 28404015  T
Q  151 cacgattttggtacctaaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||||||||||||||||||||||| ||||  ||||  |||| ||||||||||||| |||| ||||    
T  28404016 cacgattttggtacctaaaaatgtaaactcagtaaa--ttcgaagagttaacactcgatttgcgga 28404079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 59 - 216
Target Start/End: Original strand, 5494726 - 5494881
Alignment:
Q  59 ggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattt 158  Q
    |||| |||||||| |||||||| |||||||||||| |||||| || |||||||||  |||| |||||||||||||||||||||| || ||||||||||||    
T  5494726 ggtcaagtttacacgagtttatcgagtgttaactcagtcaaactcatcaaaccttctgattttaccagaaaccgagtttacctcagagttaacacgattt 5494825  T
Q  159 tggtacctaaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||||||||||| ||| ||||| |||  | |||||||||||||||||||||| ||||    
T  5494826 tggtacctaaaaacgtaaactcggtaa--tctcggagagttaacactcaatttgcgga 5494881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 53 - 188
Target Start/End: Original strand, 47371547 - 47371682
Alignment:
Q  53 aaacttggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaaca 152  Q
    ||||| ||||||||||||| |||||||  ||||||||||||||||||| ||| |||||||| ||||| ||||||||| ||||||||||||||| ||||||    
T  47371547 aaactcggtcgagtttacacgagtttaccgagtgttaactcggtcaaactcggcaaaccttccgattttaccagaaatcgagtttacctccgagttaaca 47371646  T
Q  153 cgattttggtacctaaaaatgtagactcgataaact 188  Q
    ||||||||||||||||  | ||| ||||||||||||    
T  47371647 cgattttggtacctaagtacgtaaactcgataaact 47371682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 45273129 - 45272982
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  |||||||||||| |||||| |||||||||||| ||||| |||||||||||||||||||||| || ||||||| ||||| ||||||    
T  45273129 ttacacgagtttaccgagtgttaactcagtcaaactcgtcaaaccttccgattttaccagaaaccgagtttacctcagagttaacacaatttttgtacct 45273030  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||| ||| |||||||||  | ||||||||||||||||| |||| ||||    
T  45273029 aaaaacgtaaactcgataa--tctcggagagttaacactcgatttgcgga 45272982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 45 - 180
Target Start/End: Original strand, 32760063 - 32760198
Alignment:
Q  45 ttagatgtaaacttggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccg 144  Q
    ||||| ||||||| | ||||||||||| ||||||| |||||||||||||||||||| |||| || |||  ||||| ||| |||||||||||||||||| |    
T  32760063 ttagaagtaaactcgatcgagtttacacgagtttagtgagtgttaactcggtcaaactcgttaagcctcccgattttactagaaaccgagtttacctcag 32760162  T
Q  145 aattaacacgattttggtacctaaaaatgtagactc 180  Q
    | ||||||||||||||||||||||||| ||| ||||    
T  32760163 agttaacacgattttggtacctaaaaacgtaaactc 32760198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 51 - 167
Target Start/End: Original strand, 42304470 - 42304586
Alignment:
Q  51 gtaaacttggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaa 150  Q
    ||||||| ||||||||||||| |||||||   |||||||||||||||||| |||| ||||||| | ||| ||||||||||||||||||||||||||||||    
T  42304470 gtaaactcggtcgagtttacacgagtttacctagtgttaactcggtcaaactcgttaaaccttccaattttaccagaaaccgagtttacctccgaattaa 42304569  T
Q  151 cacgattttggtaccta 167  Q
    || |||||||| |||||    
T  42304570 catgattttggcaccta 42304586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 6313138 - 6312991
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  |||||||||||| |||||| |||| ||||||| | ||| ||||||||||||| |||||||| || ||||||||||||| ||||||    
T  6313138 ttacacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaaccgattttacctcagagttaacacgatttttgtacct 6313039  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||||||| |||||||||  | ||||||| ||||||||| |||| ||||    
T  6313038 aaaaatgtaaactcgataa--tctcggagatttaacactcgatttgcgga 6312991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 25612654 - 25612507
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  |||||||||||| |||||| |||| ||||||| | ||| ||||||||||||| |||||||| || ||||||||||||| ||||||    
T  25612654 ttacacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaaccgattttacctcagagttaacacgatttttgtacct 25612555  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||||||| |||||||||  | ||||||| ||||||||| |||| ||||    
T  25612554 aaaaatgtaaactcgataa--tctcggagatttaacactcgatttgcgga 25612507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 67 - 216
Target Start/End: Original strand, 29396070 - 29396217
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  |||||||||||| |||||| |||| ||||||| | ||| ||||||||||||| |||||||| || ||||||||||||| ||||||    
T  29396070 ttacacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaaccgattttacctcagagttaacacgatttttgtacct 29396169  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||||||| |||||||||  | ||||||| ||||||||| |||| ||||    
T  29396170 aaaaatgtaaactcgataa--tctcggagatttaacactcgatttgcgga 29396217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 73 - 171
Target Start/End: Original strand, 35177202 - 35177300
Alignment:
Q  73 gagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaa 171  Q
    |||||||| ||||||||||||||||||| ||||||| |||| ||||| || |||||| |||||||||||| ||||||||||||||||||||||||||||    
T  35177202 gagtttatcgagtgttaactcggtcaaactcgtcaatccttccgattttatcagaaatcgagtttacctctgaattaacacgattttggtacctaaaaa 35177300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 59 - 216
Target Start/End: Complemental strand, 46328556 - 46328401
Alignment:
Q  59 ggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattt 158  Q
    ||||||||||||| |||||||  ||||||||||||  ||||| |||| ||||||| ||||| || ||||||||||||||||||| || ||||||||||||    
T  46328556 ggtcgagtttacacgagtttaccgagtgttaactcaatcaaactcgttaaaccttccgattttaacagaaaccgagtttacctcagagttaacacgattt 46328457  T
Q  159 tggtacctaaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    | ||||||||||| ||| ||||| |||  | ||||||| ||||||||| |||| ||||    
T  46328456 ttgtacctaaaaacgtaaactcggtaa--tctcggagaattaacactcgatttgcgga 46328401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 89 - 216
Target Start/End: Original strand, 49236974 - 49237099
Alignment:
Q  89 aactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcgataaact 188  Q
    |||||||||||| |||||||||||||||||| |||||||||||||| ||| ||||||||||||||| |||||||||||||| |  || |||||||||||     
T  49236974 aactcggtcaaactcgtcaaacctttcgattttaccagaaaccgagcttaactccgaattaacacggttttggtacctaaacacataaactcgataaac- 49237072  T
Q  189 ttcggagagttaacactcaatttacgga 216  Q
     ||| ||  ||||||||| |||||||||    
T  49237073 -tcgaagtattaacactcgatttacgga 49237099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 66 - 188
Target Start/End: Complemental strand, 4005203 - 4005081
Alignment:
Q  66 tttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacc 165  Q
    |||||| ||||||| |||||||||||||||||||| ||||||||| || ||||| ||||||||| ||||||||||||||| |||||||| |||| | |||    
T  4005203 tttacacgagtttactgagtgttaactcggtcaaactcgtcaaactttccgattttaccagaaatcgagtttacctccgagttaacacgtttttagcacc 4005104  T
Q  166 taaaaatgtagactcgataaact 188  Q
    |||| | ||| ||||| ||||||    
T  4005103 taaacacgtaaactcggtaaact 4005081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 51 - 212
Target Start/End: Complemental strand, 25253644 - 25253485
Alignment:
Q  51 gtaaacttggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaa 150  Q
    ||||||| | ||||||||||| |||||||  || ||||||||| |||||| |||||||| ||| ||| | ||||||||||||| |||||||| | |||||    
T  25253644 gtaaactcgatcgagtttacaagagtttaccgaatgttaactcagtcaaactcgtcaaatcttccgagtttaccagaaaccgaatttacctcagtattaa 25253545  T
Q  151 cacgattttggtacctaaaaatgtagactcgataaactttcggagagttaacactcaattta 212  Q
    |||||||||||||||||||||  || ||||| |||||  || |||| ||||||||| |||||    
T  25253544 cacgattttggtacctaaaaacataaactcggtaaac--tcagagaattaacactcgattta 25253485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 51702157 - 51702010
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  |||||||||||| |||||| |||| ||||||||  ||| ||||||||||||| |||||||| || ||||||| ||||| ||||||    
T  51702157 ttacacgagtttaccgagtgttaactcagtcaaactcgttaaaccttttaattttaccagaaaccgattttacctcagagttaacacaatttttgtacct 51702058  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||||||| |||||||||  | ||||||| ||||||||| |||| ||||    
T  51702057 aaaaatgtaaactcgataa--tctcggagatttaacactcgatttgcgga 51702010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 69 - 169
Target Start/End: Original strand, 1243294 - 1243394
Alignment:
Q  69 acatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaa 168  Q
    ||||||||||| |||||||||||||||||||| ||||||||| || ||||| ||||||||| ||||||||||||||| |||||||| |||| | ||||||    
T  1243294 acatgagtttactgagtgttaactcggtcaaactcgtcaaactttccgattttaccagaaatcgagtttacctccgagttaacacgtttttagcacctaa 1243393  T
Q  169 a 169  Q
    |    
T  1243394 a 1243394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 53 - 216
Target Start/End: Original strand, 3583528 - 3583689
Alignment:
Q  53 aaacttggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaaca 152  Q
    ||||| ||| |||||| ||  ||||||  ||||||||||||||| ||| ||||||||| || ||||| ||| ||||||||||||||| ||  | ||||||    
T  3583528 aaactcggttgagtttgcacaagtttaccgagtgttaactcggttaaactcgtcaaactttccgattttactagaaaccgagtttacttctaagttaaca 3583627  T
Q  153 cgattttggtacctaaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    |||||| |||||||||||| ||| ||||| |||||  ||||||||||||||||| |||| ||||    
T  3583628 cgatttcggtacctaaaaacgtaaactcggtaaac--tcggagagttaacactcgatttgcgga 3583689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 59 - 171
Target Start/End: Complemental strand, 49231577 - 49231465
Alignment:
Q  59 ggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattt 158  Q
    |||||||||||||  ||||||  || ||||||||  |||||| |||| ||||||| |||||||||||||||||||||||||||| || ||||||||||||    
T  49231577 ggtcgagtttacacaagtttaccgattgttaacttagtcaaactcgttaaaccttccgattataccagaaaccgagtttacctcagagttaacacgattt 49231478  T
Q  159 tggtacctaaaaa 171  Q
    | |||||||||||    
T  49231477 ttgtacctaaaaa 49231465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 66 - 188
Target Start/End: Complemental strand, 9192160 - 9192038
Alignment:
Q  66 tttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacc 165  Q
    |||||| ||||||| |||||||||||||||||||| ||||||||| ||  |||| ||||||||| ||||||||||||||| |||||||| |||| | |||    
T  9192160 tttacacgagtttactgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagtttacctccgagttaacacgtttttagcacc 9192061  T
Q  166 taaaaatgtagactcgataaact 188  Q
    |||| | ||| ||||| ||||||    
T  9192060 taaacacgtaaactcggtaaact 9192038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 67 - 216
Target Start/End: Original strand, 15834670 - 15834817
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  |||||||||||| |||||| |||| ||||||| | ||| ||||| ||| ||| |||||||| || ||||||||||||| ||||||    
T  15834670 ttacacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccaaaaatcgaatttacctcagagttaacacgatttttgtacct 15834769  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||||||| ||||| |||  | ||||||||||||||||| |||| ||||    
T  15834770 aaaaatgtaaactcggtaa--tctcggagagttaacactcgatttgcgga 15834817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 66 - 188
Target Start/End: Complemental strand, 51107028 - 51106906
Alignment:
Q  66 tttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacc 165  Q
    |||||| ||||||| |||||||||||||||||||| ||||||||| || ||||| ||||||||| ||||||| ||||||| |||||||| |||| | |||    
T  51107028 tttacacgagtttactgagtgttaactcggtcaaactcgtcaaactttccgattttaccagaaatcgagttttcctccgagttaacacgtttttagcacc 51106929  T
Q  166 taaaaatgtagactcgataaact 188  Q
    |||| | ||| ||||| ||||||    
T  51106928 taaacacgtaaactcggtaaact 51106906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 104 - 216
Target Start/End: Original strand, 9322181 - 9322291
Alignment:
Q  104 gtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcgataaactttcggagagttaaca 203  Q
    |||||||||| | ||| ||||||||||||| |||||||| || ||||||||||||| ||||||||||||||| |||||||||  | ||||||| ||||||    
T  9322181 gtcaaaccttccaattttaccagaaaccgattttacctcagagttaacacgatttttgtacctaaaaatgtaaactcgataa--tctcggagatttaaca 9322278  T
Q  204 ctcaatttacgga 216  Q
    ||| |||||||||    
T  9322279 ctcgatttacgga 9322291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 73 - 169
Target Start/End: Complemental strand, 41353550 - 41353454
Alignment:
Q  73 gagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaa 169  Q
    ||||||| |||||||||||||||||||| ||||||||| || ||||| ||||||||| ||||||||||||||| |||||||| |||| | |||||||    
T  41353550 gagtttactgagtgttaactcggtcaaactcgtcaaactttccgattttaccagaaatcgagtttacctccgagttaacacgtttttagcacctaaa 41353454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 74 - 169
Target Start/End: Original strand, 5209361 - 5209456
Alignment:
Q  74 agtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaa 169  Q
    ||||||||||||||||||||| ||||| ||||||||| ||  ||||  |||||||| |||||| |||||||| |||||||||||||||||||||||    
T  5209361 agtttattgagtgttaactcgatcaaactcgtcaaactttctgatttcaccagaaatcgagttgacctccgagttaacacgattttggtacctaaa 5209456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 73 - 188
Target Start/End: Complemental strand, 8147446 - 8147331
Alignment:
Q  73 gagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaat 172  Q
    ||||||| |||||||||||||||||||| ||||||||| || | ||| ||||||||| ||||||||||||||| |||||||| |||| | ||||||| |     
T  8147446 gagtttactgagtgttaactcggtcaaactcgtcaaactttgcaattttaccagaaatcgagtttacctccgagttaacacgtttttagcacctaaacac 8147347  T
Q  173 gtagactcgataaact 188  Q
    ||| ||||| ||||||    
T  8147346 gtaaactcggtaaact 8147331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 86 - 211
Target Start/End: Complemental strand, 52182443 - 52182319
Alignment:
Q  86 gttaactcg-gtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcgata 184  Q
    ||||||||| ||| || ||||||||| |||||||| ||||||||| ||| |||||||||||||| |||||||||  ||||||||||| ||| ||||||||    
T  52182443 gttaactcgagtcgaactcgtcaaacatttcgattttaccagaaatcgaatttacctccgaattgacacgatttcagtacctaaaaacgtaaactcgata 52182344  T
Q  185 aactttcggagagttaacactcaattt 211  Q
    |||  |||| |||||||||||| ||||    
T  52182343 aac--tcggcgagttaacactcgattt 52182319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 181
Target Start/End: Complemental strand, 18799014 - 18798900
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  |||||||||||| |||||  |||| ||||||| | ||| ||||||||||||| |||||||| || ||||||||||||| ||||||    
T  18799014 ttacacgagtttaccgagtgttaactcagtcaatctcgttaaaccttccaattttaccagaaaccgattttacctcagagttaacacgatttttgtacct 18798915  T
Q  167 aaaaatgtagactcg 181  Q
    ||||||||| |||||    
T  18798914 aaaaatgtaaactcg 18798900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 216
Target Start/End: Original strand, 38535774 - 38535929
Alignment:
Q  59 ggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattt 158  Q
    ||||||||||||| |||||||  |||||||||||| |||||| |||| ||  ||| ||||| ||||||||||| |||||||||| || ||||||| ||||    
T  38535774 ggtcgagtttacacgagtttaccgagtgttaactcagtcaaactcgttaagtcttccgattttaccagaaacccagtttacctcagagttaacacaattt 38535873  T
Q  159 tggtacctaaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    | ||| ||||||| ||| ||||| ||| |||  |||||||||| |||| |||| ||||    
T  38535874 ttgtaactaaaaacgtaaactcggtaatctt--ggagagttaaaactcgatttgcgga 38535929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 216
Target Start/End: Original strand, 38557992 - 38558147
Alignment:
Q  59 ggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattt 158  Q
    ||||||||||||| |||||||  |||||||||||| |||||| |||| ||  ||| ||||| ||||||||||| |||||||||| || ||||||| ||||    
T  38557992 ggtcgagtttacacgagtttaccgagtgttaactcagtcaaactcgttaagtcttccgattttaccagaaacccagtttacctcagagttaacacaattt 38558091  T
Q  159 tggtacctaaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    | ||| ||||||| ||| ||||| ||| |||  |||||||||| |||| |||| ||||    
T  38558092 ttgtaactaaaaacgtaaactcggtaatctt--ggagagttaaaactcgatttgcgga 38558147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 52 - 169
Target Start/End: Original strand, 48966462 - 48966579
Alignment:
Q  52 taaacttggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaac 151  Q
    |||||| ||| ||||||||| |||||||  |||| |||||||||||||| |||||||||||| | |||  | |||||| | |||||||||| || |||||    
T  48966462 taaactcggtagagtttacacgagtttaccgagtattaactcggtcaaactcgtcaaaccttccaatttcatcagaaatcaagtttacctcagagttaac 48966561  T
Q  152 acgattttggtacctaaa 169  Q
    ||||||||||||||||||    
T  48966562 acgattttggtacctaaa 48966579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 188
Target Start/End: Original strand, 49971599 - 49971703
Alignment:
Q  86 gttaactcg-gtcaaattcgtcaa-acctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcgat 183  Q
    ||||||||| |||||| ||||||| || |||||||| ||||||||| ||||||||||||||| || |||||||||||||||||||||| ||| ||||| |    
T  49971599 gttaactcgagtcaaactcgtcaacacatttcgattttaccagaaaacgagtttacctccgagttgacacgattttggtacctaaaaacgtaaactcggt 49971698  T
Q  184 aaact 188  Q
    |||||    
T  49971699 aaact 49971703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 82 - 216
Target Start/End: Original strand, 8140884 - 8141016
Alignment:
Q  82 gagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcg 181  Q
    |||||||||||| |||||| || | |||||||   ||| ||||||||| ||| |||||||| || ||||||||||||| ||||||||||| ||| |||||    
T  8140884 gagtgttaactcagtcaaactcattaaaccttctaattttaccagaaatcgattttacctcagagttaacacgatttttgtacctaaaaacgtaaactcg 8140983  T
Q  182 ataaactttcggagagttaacactcaatttacgga 216  Q
    ||||  | ||||||||||||||||| |||| ||||    
T  8140984 ataa--tctcggagagttaacactcgatttgcgga 8141016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 53 - 188
Target Start/End: Complemental strand, 15927448 - 15927313
Alignment:
Q  53 aaacttggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaaca 152  Q
    ||||| ||| |||||||||  ||||||| || ||||||||| |||||| ||||||||| || ||||| || |||||||||| |||||||| || ||||||    
T  15927448 aaactcggttgagtttacaatagtttatcgaatgttaactcagtcaaactcgtcaaactttccgattttatcagaaaccgaatttacctcagagttaaca 15927349  T
Q  153 cgattttggtacctaaaaatgtagactcgataaact 188  Q
    | |||||||||| |||| |  || ||||||||||||    
T  15927348 caattttggtacttaaacacttaaactcgataaact 15927313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 73 - 188
Target Start/End: Complemental strand, 26757744 - 26757629
Alignment:
Q  73 gagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaat 172  Q
    ||||||| |||||||||||||||||||| ||||||||| || ||||| ||||||||| |||||||||||| || ||||| || |||| | ||||||| |     
T  26757744 gagtttactgagtgttaactcggtcaaactcgtcaaactttccgattttaccagaaatcgagtttacctctgagttaactcgtttttagcacctaaacac 26757645  T
Q  173 gtagactcgataaact 188  Q
    ||| ||||| ||||||    
T  26757644 gtaaactcggtaaact 26757629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 64 - 169
Target Start/End: Original strand, 49453043 - 49453149
Alignment:
Q  64 agtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacga-ttttggt 162  Q
    |||||||| |||||||  ||||||||||||||||||| | ||||||||||  |||| | ||||||| |||||||||||| || ||||||||| |||||||    
T  49453043 agtttacacgagtttaccgagtgttaactcggtcaaacttgtcaaaccttatgatttttccagaaatcgagtttacctcagagttaacacgatttttggt 49453142  T
Q  163 acctaaa 169  Q
    |||||||    
T  49453143 acctaaa 49453149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 211
Target Start/End: Original strand, 25830885 - 25831027
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| ||||||| ||||||||||||| |||||| |||| ||||||| | ||| ||  || |||||| |||| ||| || ||||||||||||| ||||||    
T  25830885 ttacacgagtttactgagtgttaactcagtcaaactcgttaaaccttccaattttattaggaaccgattttatctcagagttaacacgatttttgtacct 25830984  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaattt 211  Q
    ||||| ||| ||||| |||  | ||||||||||||||||| ||||    
T  25830985 aaaaacgtaaactcggtaa--tctcggagagttaacactcgattt 25831027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 169
Target Start/End: Original strand, 11579092 - 11579188
Alignment:
Q  73 gagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaa 169  Q
    ||||||| |||||||||||||||||||| ||||||||| || ||||| ||||||||| | | ||||||||||| |||||||| |||| | |||||||    
T  11579092 gagtttactgagtgttaactcggtcaaactcgtcaaactttccgattttaccagaaatcaaatttacctccgagttaacacgtttttagcacctaaa 11579188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 67 - 180
Target Start/End: Original strand, 48177078 - 48177192
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccag-aaaccgagtttacctccgaattaacacgattttggtacc 165  Q
    ||||| ||||||| ||||||||||||| |||||| |||| ||||||| | ||| |||||| ||||||| |||||||| || |||||||||||||  ||||    
T  48177078 ttacacgagtttactgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaaaccgattttacctcagagttaacacgatttttctacc 48177177  T
Q  166 taaaaatgtagactc 180  Q
    |||||| ||| ||||    
T  48177178 taaaaacgtaaactc 48177192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 181
Target Start/End: Complemental strand, 7798618 - 7798521
Alignment:
Q  84 gtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcg 181  Q
    ||||| ||||||||||| ||||||||| || |||||  |||| ||||||||||||||||||| |||||||| |||||  ||||||||| ||| |||||    
T  7798618 gtgttcactcggtcaaactcgtcaaactttccgatttcaccaaaaaccgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcg 7798521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 84 - 171
Target Start/End: Original strand, 33886863 - 33886950
Alignment:
Q  84 gtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaa 171  Q
    ||||| ||||||||||| ||||||||| || |||||  |||| ||||||||||||||||||| |||||||| |||||  |||||||||    
T  33886863 gtgttcactcggtcaaactcgtcaaactttccgatttcaccaaaaaccgagtttacctccgagttaacacgtttttgccacctaaaaa 33886950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 84 - 171
Target Start/End: Complemental strand, 33957387 - 33957300
Alignment:
Q  84 gtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaa 171  Q
    ||||| ||||||||||| ||||||||| || |||||  |||| ||||||||||||||||||| |||||||| |||||  |||||||||    
T  33957387 gtgttcactcggtcaaactcgtcaaactttccgatttcaccaaaaaccgagtttacctccgagttaacacgtttttgccacctaaaaa 33957300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 181
Target Start/End: Complemental strand, 3593358 - 3593267
Alignment:
Q  90 actcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcg 181  Q
    ||||||| ||| | |||||||||| ||||| ||  ||||| ||| ||||||||||| |||||||||||||| ||||||||||| || |||||    
T  3593358 actcggttaaacttgtcaaaccttccgattttattagaaatcgaatttacctccgagttaacacgattttgatacctaaaaatataaactcg 3593267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 160
Target Start/End: Original strand, 34751575 - 34751651
Alignment:
Q  84 gtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttg 160  Q
    ||||||||||||||||| | | ||||| || |||||  |||| ||||||||||||||||||| |||||||| |||||    
T  34751575 gtgttaactcggtcaaacttggcaaactttccgatttcaccaaaaaccgagtttacctccgagttaacacgtttttg 34751651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 180
Target Start/End: Complemental strand, 1108468 - 1108374
Alignment:
Q  86 gttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactc 180  Q
    |||||||| |||||| ||||||||| || |||||  |||| ||||||||||||||||||| || ||||| ||||   ||||||||| ||| ||||    
T  1108468 gttaactcagtcaaactcgtcaaactttccgatttcaccaaaaaccgagtttacctccgagtttacacgtttttaccacctaaaaacgtaaactc 1108374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 171
Target Start/End: Original strand, 27257872 - 27257948
Alignment:
Q  95 gtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaa 171  Q
    |||||| ||||||||| || ||||| ||||  ||| | |||||||||| || || ||||||||||||||||||||||    
T  27257872 gtcaaactcgtcaaacattccgattttaccgaaaatcaagtttacctcggagttgacacgattttggtacctaaaaa 27257948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 171
Target Start/End: Complemental strand, 51902097 - 51901983
Alignment:
Q  57 ttggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgat 156  Q
    ||||||||||||| |||| ||||| |||||||||||| |||||| | || |||| ||| |||| || ||||||   |||||| |  | | ||||||||||    
T  51902097 ttggtcgagtttagatgaatttatcgagtgttaactcagtcaaacttgttaaacttttggattttatcagaaatgaagtttagcatcaagttaacacgat 51901998  T
Q  157 tttggtacctaaaaa 171  Q
    || |||| |||||||    
T  51901997 ttcggtatctaaaaa 51901983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 181
Target Start/End: Complemental strand, 18954563 - 18954486
Alignment:
Q  104 gtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcg 181  Q
    ||||||| || |||||  |||| ||||||||||||| ||||| |||||||| |||||  ||||||||| ||| |||||    
T  18954563 gtcaaactttccgatttcaccaaaaaccgagtttacgtccgagttaacacgtttttgccacctaaaaacgtaaactcg 18954486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 153
Target Start/End: Complemental strand, 34019237 - 34019168
Alignment:
Q  84 gtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacac 153  Q
    ||||||||||||||||  ||||||||| || |||||  |||| ||| ||| ||||||||||| |||||||    
T  34019237 gtgttaactcggtcaacctcgtcaaactttccgatttcaccaaaaatcgaatttacctccgagttaacac 34019168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 139
Target Start/End: Complemental strand, 29219683 - 29219611
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttac 139  Q
    ||||| |||||||  |||||||||||| |||||| |||| ||||||| | |||  |||||||||||| |||||    
T  29219683 ttacacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaatttcaccagaaaccgattttac 29219611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 45)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 59 - 211
Target Start/End: Complemental strand, 8675901 - 8675750
Alignment:
Q  59 ggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcga-ttataccagaaaccgagtttacctccgaattaacacgatt 157  Q
    ||||||||||||| |||||||| |||||||||||| |||||| |||||||||||||||| || |||||||||||||||||||||  || |||||||||||    
T  8675901 ggtcgagtttacacgagtttatcgagtgttaactcagtcaaactcgtcaaacctttcgatttttaccagaaaccgagtttaccttagagttaacacgatt 8675802  T
Q  158 ttggtacctaaaaatgtagactcgataaactttcggagagttaacactcaattt 211  Q
    |||||||||||||| ||  ||||| |||  | ||||||||||||||||| ||||    
T  8675801 ttggtacctaaaaacgttaactcggtaa--tctcggagagttaacactcgattt 8675750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 59 - 216
Target Start/End: Complemental strand, 29893541 - 29893386
Alignment:
Q  59 ggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattt 158  Q
    ||||||||||||| |||||||  |||||||||||| |||||| |||| |||||||||||||  ||||||||| ||||||||||| || ||||||||||||    
T  29893541 ggtcgagtttacacgagtttaccgagtgttaactcagtcaaactcgttaaacctttcgatttcaccagaaactgagtttacctcagagttaacacgattt 29893442  T
Q  159 tggtacctaaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    | |||| |||||||||| ||||| |||  | ||||||||||||||||| |||| ||||    
T  29893441 ttgtacttaaaaatgtaaactcggtaa--tctcggagagttaacactcgatttgcgga 29893386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 67 - 216
Target Start/End: Original strand, 29614439 - 29614586
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  |||||||||||| |||||| |||| ||||||||| ||| ||||||||||||| |||||||| || ||||||||||||| ||||||    
T  29614439 ttacacgagtttaccgagtgttaactcagtcaaactcgttaaacctttcaattttaccagaaaccgattttacctcagagttaacacgatttttgtacct 29614538  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||||||| |||||||||  | ||||||| ||||||||| |||| ||||    
T  29614539 aaaaatgtaaactcgataa--tctcggagatttaacactcgatttgcgga 29614586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 57 - 216
Target Start/End: Complemental strand, 7993728 - 7993571
Alignment:
Q  57 ttggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgat 156  Q
    |||||||||||||||  ||||||  |||||||||||| |||||| |||| ||||||| ||||| ||||||||||||||||||||||  | ||||||||||    
T  7993728 ttggtcgagtttacaccagtttaccgagtgttaactcagtcaaactcgttaaaccttccgattttaccagaaaccgagtttacctcatagttaacacgat 7993629  T
Q  157 tttggtacctaaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||| |||| ||||||| || ||||| |||  | ||||||||||||||||| |||| ||||    
T  7993628 ttttgtacttaaaaatatatactcggtaa--tctcggagagttaacactcgatttgcgga 7993571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 510207 - 510060
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  |||||||||||| |||||| |||| ||||||| | ||| ||||||||||||| |||||||| || ||||||||||||| ||||||    
T  510207 ttacacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaaccgattttacctcagagttaacacgatttttgtacct 510108  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||||||| |||||||||  | ||||||| ||||||||| |||| ||||    
T  510107 aaaaatgtaaactcgataa--tctcggagatttaacactcgatttgcgga 510060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 28342872 - 28342725
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  |||||||||||| |||||| |||| ||||||| | ||| ||||||||||||| |||||||| || ||||||||||||| ||||||    
T  28342872 ttacacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaaccgattttacctcagagttaacacgatttttgtacct 28342773  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||||||| |||||||||  | ||||||| ||||||||| |||| ||||    
T  28342772 aaaaatgtaaactcgataa--tctcggagatttaacactcgatttgcgga 28342725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 67 - 216
Target Start/End: Original strand, 33891878 - 33892025
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| ||||||||||||||||||||| ||||||||||| ||||||| | ||| ||||||||||||| |||||||  || ||||||||||||| ||||||    
T  33891878 ttacacgagtttattgagtgttaactcagtcaaattcgttaaaccttccaattttaccagaaaccgattttaccttagagttaacacgatttttgtacct 33891977  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||| ||| ||| | |||  | ||||||||||||||||| |||| ||||    
T  33891978 aaaaacgtaaacttggtaa--tctcggagagttaacactcgatttgcgga 33892025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 59 - 216
Target Start/End: Complemental strand, 37328476 - 37328321
Alignment:
Q  59 ggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattt 158  Q
    ||||||||||||| |||||||  |||||||||||| ||||||  ||| ||||||| ||||| ||||||||| |||||||||||  || ||||||||||||    
T  37328476 ggtcgagtttacacgagtttaccgagtgttaactcagtcaaacacgttaaaccttccgattttaccagaaatcgagtttaccttagagttaacacgattt 37328377  T
Q  159 tggtacctaaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    | ||||||||||| ||| |||||||||  | ||||||||| ||||||| |||| ||||    
T  37328376 ttgtacctaaaaacgtaaactcgataa--tctcggagagtcaacactcgatttgcgga 37328321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 39784668 - 39784521
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  |||||||||||| |||||| |||| ||||||| | ||| ||||||||||||| |||||||| || ||||||||||||| ||||||    
T  39784668 ttacacgagtttaccgagtgttaactctgtcaaactcgttaaaccttccaattttaccagaaaccgattttacctcagagttaacacgatttttgtacct 39784569  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||||||| |||||||||  | ||| ||| ||||||||| |||||||||    
T  39784568 aaaaatgtaaactcgataa--tctcgaagatttaacactcgatttacgga 39784521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 59 - 181
Target Start/End: Original strand, 48136864 - 48136986
Alignment:
Q  59 ggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattt 158  Q
    ||||||||||||| || ||||| |||||||||||| |||||| ||||||||||||   ||| |||||||||| ||||||||||| || ||||||||||||    
T  48136864 ggtcgagtttacacgaatttatcgagtgttaactcagtcaaactcgtcaaaccttctaattttaccagaaactgagtttacctcagagttaacacgattt 48136963  T
Q  159 tggtacctaaaaatgtagactcg 181  Q
    ||||||||||||| ||| |||||    
T  48136964 tggtacctaaaaacgtaaactcg 48136986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 60 - 211
Target Start/End: Complemental strand, 12740938 - 12740789
Alignment:
Q  60 gtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgatttt 159  Q
    |||||||||||| || ||||  ||||| |||||  |||||| |||||||||||| | ||| ||||||| |||||||||||||| || |||||||||||||    
T  12740938 gtcgagtttacacgactttaccgagtgctaacttagtcaaactcgtcaaaccttccaattttaccagacaccgagtttacctcagagttaacacgatttt 12740839  T
Q  160 ggtacctaaaaatgtagactcgataaactttcggagagttaacactcaattt 211  Q
    |||||||||||| ||| ||||| |||  | ||||||||||||||||| ||||    
T  12740838 ggtacctaaaaacgtaaactcggtaa--tctcggagagttaacactcgattt 12740789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 61 - 216
Target Start/End: Complemental strand, 42610737 - 42610584
Alignment:
Q  61 tcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttg 160  Q
    |||| |||||| |||||||   |||||||||||||||||| ||||||||||||  |||| ||||||||||| ||||||||||  | ||||||||||||||    
T  42610737 tcgaatttacacgagtttacccagtgttaactcggtcaaactcgtcaaaccttctgattttaccagaaaccaagtttacctcaaatttaacacgattttg 42610638  T
Q  161 gtacctaaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||||||| | ||| | ||| |||||  || ||||||||||||||||||| ||||    
T  42610637 gtacctaaacacgtaaattcggtaaac--tcagagagttaacactcaatttgcgga 42610584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 59 - 181
Target Start/End: Original strand, 37972513 - 37972635
Alignment:
Q  59 ggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattt 158  Q
    ||||||||||||| |||||||   |||| |||||| ||||||||||| ||||||| ||||| |||||||||| ||||||| ||| || ||||||||||||    
T  37972513 ggtcgagtttacacgagtttaccaagtgctaactcagtcaaattcgttaaaccttccgattttaccagaaactgagtttatctcagagttaacacgattt 37972612  T
Q  159 tggtacctaaaaatgtagactcg 181  Q
    ||||||||||||| ||| |||||    
T  37972613 tggtacctaaaaacgtaaactcg 37972635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 59 - 216
Target Start/End: Complemental strand, 41827897 - 41827742
Alignment:
Q  59 ggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattt 158  Q
    ||||||||||||| |||||||  |||||||||||| |||||| | || ||| |||  |||| |||||||||| ||||||||||| || ||||||||||||    
T  41827897 ggtcgagtttacacgagtttaccgagtgttaactcagtcaaacttgttaaatcttctgattttaccagaaactgagtttacctcagagttaacacgattt 41827798  T
Q  159 tggtacctaaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    | ||||||||||| ||| |||| ||||  | || ||||||||||||||||||| ||||    
T  41827797 ttgtacctaaaaacgtaaactcaataa--tctcagagagttaacactcaatttgcgga 41827742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 82 - 211
Target Start/End: Original strand, 44256414 - 44256541
Alignment:
Q  82 gagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcg 181  Q
    |||||||||||| |||||| |||| ||||||| ||||| ||||||||| |||||||||||| || ||||||||||||| ||| ||||||| ||| |||||    
T  44256414 gagtgttaactcagtcaaactcgttaaaccttccgattttaccagaaatcgagtttacctcagagttaacacgatttttgtatctaaaaacgtaaactcg 44256513  T
Q  182 ataaactttcggagagttaacactcaattt 211  Q
    ||||  | ||||||||||||||||| ||||    
T  44256514 ataa--tctcggagagttaacactcgattt 44256541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 61 - 209
Target Start/End: Complemental strand, 29586081 - 29585935
Alignment:
Q  61 tcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttg 160  Q
    ||||||||||| |||||||  |||||||||||| |||||| || | ||||||| ||||| |||| |||||||| |||||||| || |||||||||||||     
T  29586081 tcgagtttacacgagtttaccgagtgttaactcagtcaaactcattaaaccttccgattttacccgaaaccgactttacctcagagttaacacgattttt 29585982  T
Q  161 gtacctaaaaatgtagactcgataaactttcggagagttaacactcaat 209  Q
    ||||||||||| ||| ||||| |||  | || |||||||||||||||||    
T  29585981 gtacctaaaaacgtaaactcggtaa--tctcagagagttaacactcaat 29585935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 18838971 - 18838824
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  || ||||||||  |||||| |||| ||||||| | ||| ||||||||||||| |||||||| || ||||||||||||| ||||||    
T  18838971 ttacacgagtttaccgaatgttaacttagtcaaactcgttaaaccttccaattttaccagaaaccgattttacctcagagttaacacgatttttgtacct 18838872  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||||||| ||||| |||  | ||||||||||||||||| |||| ||||    
T  18838871 aaaaatgtaaactcggtaa--tctcggagagttaacactcgatttgcgga 18838824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 23101852 - 23101705
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  |||||||||||| |||||| |||| ||||||| | ||| |||||||||| || |||||||  || ||||||||||||| ||||||    
T  23101852 ttacacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaactgattttaccttagagttaacacgatttttgtacct 23101753  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||||||| |||||||||  | ||||||| ||||||||| |||| ||||    
T  23101752 aaaaatgtaaactcgataa--tctcggagatttaacactcgatttgcgga 23101705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 69 - 188
Target Start/End: Original strand, 4639862 - 4639981
Alignment:
Q  69 acatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaa 168  Q
    ||||||||||| |||||||||||||||||||| ||||||||  || ||||| |||||||||  |||||||||||||| |||||||| |||| | ||||||    
T  4639862 acatgagtttactgagtgttaactcggtcaaactcgtcaaaatttccgattttaccagaaatagagtttacctccgagttaacacgtttttagcacctaa 4639961  T
Q  169 aaatgtagactcgataaact 188  Q
    | | ||| ||||| ||||||    
T  4639962 acacgtaaactcggtaaact 4639981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 73 - 188
Target Start/End: Complemental strand, 14741534 - 14741419
Alignment:
Q  73 gagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaat 172  Q
    ||||||| |||||||||||||||||||| ||||||||| || ||||| ||| ||||| ||||||||||||||| |||||||| |||| | ||||||| |     
T  14741534 gagtttactgagtgttaactcggtcaaactcgtcaaactttccgattttactagaaatcgagtttacctccgagttaacacgtttttagcacctaaacac 14741435  T
Q  173 gtagactcgataaact 188  Q
    ||| ||||| ||||||    
T  14741434 gtaaactcggtaaact 14741419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 39028648 - 39028501
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| ||||||| ||||||||||||| |||||| |||| ||| ||| | ||| ||||||||||||| |||||||| || || |||| ||||| ||||||    
T  39028648 ttacacgagtttactgagtgttaactcagtcaaactcgttaaatcttccaattgtaccagaaaccgattttacctcagagtttacacaatttttgtacct 39028549  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||| ||| ||||| |||  | ||||||||||||||||| |||| ||||    
T  39028548 aaaaacgtaaactcggtaa--tctcggagagttaacactcgatttgcgga 39028501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 216
Target Start/End: Original strand, 40460358 - 40460505
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||| || ||||||||||||| |||||| |||| ||||||| | ||| ||||||||||||| |||||||| || ||||||||||||| ||||||    
T  40460358 ttacacgagtatactgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaaccgattttacctcagagttaacacgatttttgtacct 40460457  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||  ||| ||||| |||  | ||| ||||||||||||| |||| ||||    
T  40460458 aaaagcgtaaactcggtaa--tctcgaagagttaacactcgatttgcgga 40460505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 216
Target Start/End: Original strand, 44121569 - 44121724
Alignment:
Q  59 ggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattt 158  Q
    ||||||||||||| |||||||   ||||||||||| |||||| |||| || |||| ||||| ||||||||||||| ||||||||  | ||||||||||||    
T  44121569 ggtcgagtttacacgagtttaccaagtgttaactcagtcaaactcgttaagccttccgattttaccagaaaccgaatttacctcatagttaacacgattt 44121668  T
Q  159 tggtacctaaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    | ||||||||||| ||| | ||| |||  | || |||||||||||||| |||| ||||    
T  44121669 ttgtacctaaaaacgtaaattcggtaa--tctcagagagttaacactcgatttgcgga 44121724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 104 - 216
Target Start/End: Complemental strand, 32884295 - 32884185
Alignment:
Q  104 gtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcgataaactttcggagagttaaca 203  Q
    |||||||||| ||||| |||||||||| ||||||||||| || ||||| ||||||| ||||||||||| ||| ||||| |||  | ||||||||||||||    
T  32884295 gtcaaaccttccgattttaccagaaacagagtttacctcagagttaactcgatttttgtacctaaaaacgtaaactcggtaa--tctcggagagttaaca 32884198  T
Q  204 ctcaatttacgga 216  Q
    ||| |||||||||    
T  32884197 ctcgatttacgga 32884185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 59 - 210
Target Start/End: Complemental strand, 21486264 - 21486115
Alignment:
Q  59 ggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattt 158  Q
    ||||||||||||| |||||||  ||||||||||||| ||||| || |||||||||   ||| ||||| ||  ||||||||||| | | ||||||||||||    
T  21486264 ggtcgagtttacacgagtttaccgagtgttaactcgatcaaactcatcaaaccttctaattttaccaaaattcgagtttaccttcaagttaacacgattt 21486165  T
Q  159 tggtacctaaaaatgtagactcgataaactttcggagagttaacactcaatt 210  Q
    || || |||||| |||| |||||||||||  ||  |||||||||||||||||    
T  21486164 tgatatctaaaagtgtaaactcgataaac--tcaaagagttaacactcaatt 21486115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 114 - 216
Target Start/End: Complemental strand, 43172221 - 43172121
Alignment:
Q  114 tcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcgataaactttcggagagttaacactcaatttac 213  Q
    |||||| ||||||||| ||||||||||||||| |||||| ||||||| |||||||||||||| ||||| |||||  || |||||||||||||| |||| |    
T  43172221 tcgattttaccagaaatcgagtttacctccgagttaacatgattttgatacctaaaaatgtaaactcggtaaac--tcagagagttaacactcgatttgc 43172124  T
Q  214 gga 216  Q
    |||    
T  43172123 gga 43172121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 3023495 - 3023348
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  |||||||||||| |||||| |||| ||||||| | ||| || |||||||||| ||||||||  | |||||| |||||| ||||||    
T  3023495 ttacacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttatcagaaaccgattttacctcaaagttaacatgatttttgtacct 3023396  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    |||||  || |||||||||  | ||||||||||||||||| |||| ||||    
T  3023395 aaaaacataaactcgataa--tctcggagagttaacactcgatttgcgga 3023348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 67 - 216
Target Start/End: Original strand, 28034492 - 28034639
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    |||||||||||||   ||||||||||| |||||| |||| ||||||| | ||| ||||||||||||| ||||| || || ||||||||||||| |||| |    
T  28034492 ttacatgagtttaccaagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaaccgattttacatcagagttaacacgatttttgtacat 28034591  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||| ||| ||||| |||  | || |||||||||||||| |||| ||||    
T  28034592 aaaaacgtaaactcggtaa--tctcagagagttaacactcgatttgcgga 28034639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 81 - 188
Target Start/End: Complemental strand, 16709533 - 16709428
Alignment:
Q  81 tgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactc 180  Q
    |||||||||||||||||||| | |||||||||| ||| | |||||  ||| ||||||||||| || ||| ||||||||||||||||||||| ||| ||||    
T  16709533 tgagtgttaactcggtcaaacttgtcaaaccttccgagtttacca--aactgagtttacctcagagttaccacgattttggtacctaaaaacgtaaactc 16709436  T
Q  181 gataaact 188  Q
    | ||||||    
T  16709435 ggtaaact 16709428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 81 - 188
Target Start/End: Complemental strand, 17683769 - 17683664
Alignment:
Q  81 tgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactc 180  Q
    |||||||||||||||||||| | |||||||||| ||| | |||||  ||| ||||||||||| || ||| ||||||||||||||||||||| ||| ||||    
T  17683769 tgagtgttaactcggtcaaacttgtcaaaccttccgagtttacca--aactgagtttacctcagagttaccacgattttggtacctaaaaacgtaaactc 17683672  T
Q  181 gataaact 188  Q
    | ||||||    
T  17683671 ggtaaact 17683664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 86 - 170
Target Start/End: Original strand, 11735194 - 11735279
Alignment:
Q  86 gttaactcg-gtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaa 170  Q
    ||||||||| |||||| ||| ||||| || ||||| ||||||||| ||||||||||||||| ||||||||||||||| ||||||||    
T  11735194 gttaactcgagtcaaactcggcaaacattccgattttaccagaaatcgagtttacctccgagttaacacgattttgggacctaaaa 11735279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 61 - 158
Target Start/End: Complemental strand, 30823205 - 30823108
Alignment:
Q  61 tcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattt 158  Q
    ||||||||||| |||||||  ||||||||||||  ||||| ||||  |||||| ||||| ||| |||||||||||||||||| || ||||||||||||    
T  30823205 tcgagtttacacgagtttaccgagtgttaactcaatcaaactcgttgaaccttccgattttactagaaaccgagtttacctcagagttaacacgattt 30823108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 139
Target Start/End: Complemental strand, 21067949 - 21067869
Alignment:
Q  59 ggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttac 139  Q
    ||||||||||||| |||||||  |||||||||||| |||||| |||| ||||||| ||||| ||||||||| |||||||||    
T  21067949 ggtcgagtttacacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccgattttaccagaaatcgagtttac 21067869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 51 - 170
Target Start/End: Complemental strand, 21024196 - 21024077
Alignment:
Q  51 gtaaacttggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaa 150  Q
    ||||||| || | |||||||| |||||||    ||||||||||||||||| ||||||||| || |||||  |||| ||||||||||||||| ||| ||||    
T  21024196 gtaaactcggacaagtttacacgagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaaaccgagtttaccttcgagttaa 21024097  T
Q  151 cacgattttggtacctaaaa 170  Q
    |||| |||||  ||||||||    
T  21024096 cacgtttttgtcacctaaaa 21024077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 95 - 211
Target Start/End: Complemental strand, 27148931 - 27148817
Alignment:
Q  95 gtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcgataaactttcgga 194  Q
    |||||| ||||||||| ||  |||| || | ||||  ||| |||||||||| |||||||||||||| |||||||||| ||| ||||||||||||||  |     
T  27148931 gtcaaactcgtcaaacattctgattttagctgaaattgaggttacctccgatttaacacgattttgatacctaaaaacgtaaactcgataaacttt--gc 27148834  T
Q  195 gagttaacactcaattt 211  Q
    |||||||||||| ||||    
T  27148833 gagttaacactcgattt 27148817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 124 - 216
Target Start/End: Complemental strand, 33383178 - 33383088
Alignment:
Q  124 cagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||||||||||||| ||| || ||| ||||||||||||||||||||| ||| ||||| |||  | ||||||||||||||||| |||| ||||    
T  33383178 cagaaaccgagtttatctcagagttaccacgattttggtacctaaaaacgtaaactcggtaa--tctcggagagttaacactcgatttgcgga 33383088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 181
Target Start/End: Complemental strand, 34656702 - 34656605
Alignment:
Q  84 gtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcg 181  Q
    ||||||||||||||||| ||||||||| ||||||||  |||| ||||||| ||||| |||||||| ||||| ||||   ||||||||| ||| |||||    
T  34656702 gtgttaactcggtcaaactcgtcaaacttttcgatttcaccaaaaaccgaatttacttccgaatttacacgtttttaccacctaaaaacgtaaactcg 34656605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 95 - 183
Target Start/End: Original strand, 33497107 - 33497195
Alignment:
Q  95 gtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcgat 183  Q
    |||||| ||||||||| || | ||| || |||||| ||||||||||||||| || ||||||||||| ||| |||||||||| |||||||    
T  33497107 gtcaaactcgtcaaacattccaattttatcagaaatcgagtttacctccgagttgacacgattttgatacttaaaaatgtaaactcgat 33497195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 171
Target Start/End: Original strand, 14732298 - 14732385
Alignment:
Q  84 gtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaa 171  Q
    ||||| ||||||||||| ||||||||| || |||||  |||| ||||| ||||||||||||| |||||||| |||||  |||||||||    
T  14732298 gtgttcactcggtcaaactcgtcaaactttccgatttcaccaaaaaccaagtttacctccgagttaacacgtttttgccacctaaaaa 14732385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 160
Target Start/End: Complemental strand, 23017100 - 23017013
Alignment:
Q  73 gagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttg 160  Q
    |||||||  ||||||||||||||||||| |||||||| ||| | ||| ||| ||||| ||||||||||||| | ||||||| ||||||    
T  23017100 gagtttaccgagtgttaactcggtcaaactcgtcaaatcttccaattttacgagaaatcgagtttacctccaagttaacacaattttg 23017013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 188
Target Start/End: Original strand, 26201794 - 26201897
Alignment:
Q  86 gttaactcg-gtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcgata 184  Q
    ||||||||| |||||| ||||||||| || ||||| || ||  ||  |||||||||||||| || |||||||||||||||||||||||||| | ||| ||    
T  26201794 gttaactcgagtcaaactcgtcaaacattccgattttagcaataattgagtttacctccgagtttacacgattttggtacctaaaaatgtaaattcggta 26201893  T
Q  185 aact 188  Q
    ||||    
T  26201894 aact 26201897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 181
Target Start/End: Complemental strand, 35313654 - 35313557
Alignment:
Q  84 gtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcg 181  Q
    ||||||||||||||||| || |||||| || |||||  |||| ||||||| ||||||||||| |||||||| |||||  | ||||||| ||| |||||    
T  35313654 gtgttaactcggtcaaactcatcaaactttccgatttcaccaaaaaccgaatttacctccgagttaacacggttttgccatctaaaaacgtaaactcg 35313557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 153
Target Start/End: Complemental strand, 47067271 - 47067185
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacac 153  Q
    ||||| |||||||  |||||||||||| |||||| |||| ||||||||| ||| ||||||||| ||| |||| ||| || |||||||    
T  47067271 ttacacgagtttaccgagtgttaactcagtcaaactcgttaaacctttcaattttaccagaaatcgattttatctcagagttaacac 47067185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 19594307 - 19594248
Alignment:
Q  84 gtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctcc 143  Q
    ||||||||||||||||| ||||||||| || |||||  |||| |||||||||||| ||||    
T  19594307 gtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaaaccgagtttatctcc 19594248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 169
Target Start/End: Complemental strand, 6268598 - 6268513
Alignment:
Q  84 gtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaa 169  Q
    ||||||||||||||||| ||||||||| ||   |||  |||| ||||| ||||||| ||||| |||||||| |||||  |||||||    
T  6268598 gtgttaactcggtcaaactcgtcaaacattctaatttcaccaaaaacctagtttacatccgagttaacacgtttttgacacctaaa 6268513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 47)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 59 - 216
Target Start/End: Complemental strand, 5800535 - 5800380
Alignment:
Q  59 ggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattt 158  Q
    ||||||||||||| |||||||| |||||||||||| |||||| |||| |||||||  |||  ||||||||||||| |||||||| || ||||||||||||    
T  5800535 ggtcgagtttacacgagtttatcgagtgttaactcagtcaaactcgttaaaccttctgatgttaccagaaaccgaatttacctcagagttaacacgattt 5800436  T
Q  159 tggtacctaaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    | ||||||||||||||| |||||||||  | ||||||||||||||||| |||| ||||    
T  5800435 ttgtacctaaaaatgtaaactcgataa--tctcggagagttaacactcgatttgcgga 5800380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 61 - 211
Target Start/End: Original strand, 49501165 - 49501313
Alignment:
Q  61 tcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttg 160  Q
    ||||||||||| |||||||  |||||||||||| |||||| |||| ||||||| ||||| |||||||||||||||||||||| || |||||||||||||     
T  49501165 tcgagtttacacgagtttaccgagtgttaactccgtcaaactcgttaaaccttccgattttaccagaaaccgagtttacctcagagttaacacgattttt 49501264  T
Q  161 gtacctaaaaatgtagactcgataaactttcggagagttaacactcaattt 211  Q
    ||||||||||| ||| ||||| |||  | ||||||||||||||||| ||||    
T  49501265 gtacctaaaaacgtaaactcggtaa--tctcggagagttaacactcgattt 49501313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 61 - 211
Target Start/End: Original strand, 49507230 - 49507378
Alignment:
Q  61 tcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttg 160  Q
    ||||||||||| |||||||  |||||||||||| |||||| |||| ||||||| ||||| |||||||||||||||||||||| || |||||||||||||     
T  49507230 tcgagtttacacgagtttaccgagtgttaactccgtcaaactcgttaaaccttccgattttaccagaaaccgagtttacctcagagttaacacgattttt 49507329  T
Q  161 gtacctaaaaatgtagactcgataaactttcggagagttaacactcaattt 211  Q
    ||||||||||| ||| ||||| |||  | ||||||||||||||||| ||||    
T  49507330 gtacctaaaaacgtaaactcggtaa--tctcggagagttaacactcgattt 49507378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 59 - 216
Target Start/End: Original strand, 49834464 - 49834619
Alignment:
Q  59 ggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattt 158  Q
    ||||||||||||| |||||||  |||| ||||||| |||||| |||| ||||||| ||||| |||||||||||||||||||||| || ||||||||||||    
T  49834464 ggtcgagtttacacgagtttaccgagtattaactcagtcaaactcgttaaaccttccgattttaccagaaaccgagtttacctcagagttaacacgattt 49834563  T
Q  159 tggtacctaaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    | ||| ||||||| ||| ||||| ||| |||   ||||||||||||||||||||||||    
T  49834564 ttgtagctaaaaacgtaaactcggtaatctt--agagagttaacactcaatttacgga 49834619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 59 - 216
Target Start/End: Complemental strand, 28484467 - 28484311
Alignment:
Q  59 ggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacga-tt 157  Q
    ||||||||||||| |||||||| |||||||||||| |||||| |||| ||||||| | ||| |||||||||||||||||||||| || ||||||||| ||    
T  28484467 ggtcgagtttacacgagtttatcgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaaccgagtttacctcagagttaacacgactt 28484368  T
Q  158 ttggtacctaaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    || ||||||||||| ||| ||||| |||  | || ||||||||||||||||||| ||||    
T  28484367 tttgtacctaaaaacgtaaactcggtaa--tctcagagagttaacactcaatttgcgga 28484311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 51 - 181
Target Start/End: Complemental strand, 46286839 - 46286709
Alignment:
Q  51 gtaaacttggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaa 150  Q
    ||||||||| ||||||||||| |||||||| ||||||||||||||||||| |||||||||||| ||| | ||| ||||| |||||||||||  |  ||||    
T  46286839 gtaaacttgatcgagtttacaagagtttatcgagtgttaactcggtcaaactcgtcaaaccttccgagtttactagaaatcgagtttaccttagtgttaa 46286740  T
Q  151 cacgattttggtacctaaaaatgtagactcg 181  Q
    ||||||||||||||||||||| ||| |||||    
T  46286739 cacgattttggtacctaaaaacgtaaactcg 46286709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 5441965 - 5441818
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  |||||||||||| |||||| |||| ||||||| | ||| ||||||||||||| |||||||| || ||||||||||||| ||||||    
T  5441965 ttacacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaaccgattttacctcagagttaacacgatttttgtacct 5441866  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||||||| |||||||||  | ||||||| |||||| || |||||||||    
T  5441865 aaaaatgtaaactcgataa--tctcggagatttaacattcgatttacgga 5441818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 59 - 169
Target Start/End: Complemental strand, 50517315 - 50517205
Alignment:
Q  59 ggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattt 158  Q
    ||||||||||||| |||||||  ||||||||||||||||||| |||||||||||| | ||| ||||||||| ||||||||||||  | ||||||||||||    
T  50517315 ggtcgagtttacacgagtttaccgagtgttaactcggtcaaactcgtcaaaccttccaattttaccagaaatcgagtttacctcaaagttaacacgattt 50517216  T
Q  159 tggtacctaaa 169  Q
    |||||||||||    
T  50517215 tggtacctaaa 50517205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 63 - 206
Target Start/End: Complemental strand, 32322634 - 32322492
Alignment:
Q  63 gagtttacatgagtttattgagtgttaa-ctcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttgg 161  Q
    ||||||||| |||||||  ||||||||| ||| |||||| |||| || |||| ||||| |||||||||||||||||||||| |||||||||||||||| |    
T  32322634 gagtttacacgagtttaccgagtgttaaactcagtcaaactcgttaagccttccgattttaccagaaaccgagtttacctcagaattaacacgatttttg 32322535  T
Q  162 tacctaaaaatgtagactcgataaactttcggagagttaacactc 206  Q
    |||||||||| ||| ||||| |||  | |||||||||||||||||    
T  32322534 tacctaaaaacgtaaactcggtaa--tctcggagagttaacactc 32322492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 73 - 216
Target Start/End: Original strand, 29510061 - 29510202
Alignment:
Q  73 gagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaat 172  Q
    |||||||  ||||||||||||||||||| ||||||||||||  |||| |||||||||  |||||||| || || |||||||||||||| |||||||| |     
T  29510061 gagtttaccgagtgttaactcggtcaaactcgtcaaaccttctgattttaccagaaattgagtttacatcagagttaacacgattttgatacctaaacac 29510160  T
Q  173 gtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||| |||||||||||  ||||||||||||||||| |||| ||||    
T  29510161 gtaaactcgataaac--tcggagagttaacactcgatttgcgga 29510202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 82 - 216
Target Start/End: Complemental strand, 54341690 - 54341558
Alignment:
Q  82 gagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcg 181  Q
    |||||||||||| |||||| |||| ||||||||| ||| ||||||||||||| |||||||| || || |||||||||| ||||||||||||||| |||||    
T  54341690 gagtgttaactcagtcaaactcgttaaacctttcaattttaccagaaaccgattttacctcagagtttacacgatttttgtacctaaaaatgtaaactcg 54341591  T
Q  182 ataaactttcggagagttaacactcaatttacgga 216  Q
    ||||  | ||||||| ||||||||| |||| ||||    
T  54341590 ataa--tctcggagatttaacactcgatttgcgga 54341558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 51 - 169
Target Start/End: Original strand, 23671347 - 23671465
Alignment:
Q  51 gtaaacttggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaa 150  Q
    |||||||||| | | |||||| ||||||| ||||| |||||| | ||||| ||||||||| ||||||||  |||||||| ||||||||||||||| ||||    
T  23671347 gtaaacttggccaattttacacgagtttactgagtcttaacttgctcaaactcgtcaaacttttcgatttcaccagaaatcgagtttacctccgagttaa 23671446  T
Q  151 cacgattttggtacctaaa 169  Q
    |||||||||||||||||||    
T  23671447 cacgattttggtacctaaa 23671465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 27768627 - 27768480
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  || ||||||||| |||||| |||| ||||||| | ||| ||||||||||||| |||||||| || ||||||||||||| ||||||    
T  27768627 ttacacgagtttaccgaatgttaactcagtcaaactcgttaaaccttccaattttaccagaaaccgattttacctcagagttaacacgatttttgtacct 27768528  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||||||| |||||||||  | ||||||| ||||||||| |||| ||||    
T  27768527 aaaaatgtaaactcgataa--tctcggagatttaacactcgatttgcgga 27768480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 48261641 - 48261494
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  |||||||||||| |||||| |||| ||||||| | ||| ||||||||||||| |||||||| || ||||||||||||| ||||||    
T  48261641 ttacacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaaccgattttacctcagagttaacacgatttttgtacct 48261542  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||||||  |||||||||  | ||||||| ||||||||| |||| ||||    
T  48261541 aaaaatgtcaactcgataa--tctcggagatttaacactcgatttgcgga 48261494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 51321419 - 51321272
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  |||||||||||| |||||| | || ||||||| | ||| ||||||||||||| ||||| || || ||||||||||||| ||||||    
T  51321419 ttacacgagtttaccgagtgttaactcagtcaaactggttaaaccttccaattttaccagaaaccgattttacgtcagagttaacacgatttttgtacct 51321320  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||||||| |||||||||  | ||||||||||||||||| |||| ||||    
T  51321319 aaaaatgtaaactcgataa--tatcggagagttaacactcgatttgcgga 51321272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 73 - 188
Target Start/End: Complemental strand, 29469271 - 29469156
Alignment:
Q  73 gagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaat 172  Q
    ||||||| |||||||||||||||||||| ||||||||| || ||||| ||||||||| ||||||||||||||| |||||||| |||| | ||||||| |     
T  29469271 gagtttactgagtgttaactcggtcaaactcgtcaaactttccgattttaccagaaatcgagtttacctccgagttaacacgtttttagcacctaaacac 29469172  T
Q  173 gtagactcgataaact 188  Q
    ||| ||||| ||||||    
T  29469171 gtaaactcggtaaact 29469156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 51 - 169
Target Start/End: Original strand, 24966492 - 24966610
Alignment:
Q  51 gtaaacttggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaa 150  Q
    ||||||| ||||||||||||| |||||||   |||||||||| ||||||| ||| |||||||| | ||| ||||| ||||||| ||||| ||||| ||||    
T  24966492 gtaaactcggtcgagtttacacgagtttaccaagtgttaacttggtcaaactcggcaaaccttcccattttaccaaaaaccgaatttacttccgagttaa 24966591  T
Q  151 cacgattttggtacctaaa 169  Q
    |||||||||||||||||||    
T  24966592 cacgattttggtacctaaa 24966610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 59 - 181
Target Start/End: Complemental strand, 29856087 - 29855965
Alignment:
Q  59 ggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattt 158  Q
    ||||||||||||| |||||||  |||||||||||| |||||| |||| ||||||| | ||| ||||||||| |||||||||||| || ||||||||||||    
T  29856087 ggtcgagtttacacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaatcgagtttacctcagagttaacacgattt 29855988  T
Q  159 tggtacctaaaaatgtagactcg 181  Q
    | |||| |||||| ||| |||||    
T  29855987 ttgtacataaaaacgtaaactcg 29855965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 67 - 185
Target Start/End: Original strand, 37828068 - 37828186
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  |||||||||||| |||||| |||| ||||||| | ||| ||||||||||||| |||||||| || ||||||||||||| ||| ||    
T  37828068 ttacacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaaccgattttacctcagagttaacacgatttttgtatct 37828167  T
Q  167 aaaaatgtagactcgataa 185  Q
    ||||||||| |||||||||    
T  37828168 aaaaatgtaaactcgataa 37828186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 26491130 - 26491214
Alignment:
Q  85 tgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaa 169  Q
    |||||||||||||||| ||||||||||||  |||| ||||||||||||||||||||||  | |||||||||||||||||||||||    
T  26491130 tgttaactcggtcaaactcgtcaaaccttctgattttaccagaaaccgagtttacctcaaatttaacacgattttggtacctaaa 26491214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 73 - 188
Target Start/End: Complemental strand, 8084317 - 8084202
Alignment:
Q  73 gagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaat 172  Q
    ||||||| |||||||||||||||||||| ||||||||| || ||||| ||| ||||| ||||||||||||||| |||||||| |||| | ||||||| |     
T  8084317 gagtttactgagtgttaactcggtcaaactcgtcaaactttccgattttactagaaatcgagtttacctccgagttaacacgtttttagcacctaaacac 8084218  T
Q  173 gtagactcgataaact 188  Q
    ||| ||||| ||||||    
T  8084217 gtaaactcggtaaact 8084202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 73 - 211
Target Start/End: Complemental strand, 41725670 - 41725534
Alignment:
Q  73 gagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaat 172  Q
    |||||||  |||||||||||| |||||| |||| ||||||| ||||| ||||||||| |||||||||||| || ||||||||||||| |||||||||||     
T  41725670 gagtttaccgagtgttaactcagtcaaactcgttaaaccttccgattttaccagaaatcgagtttacctcagagttaacacgatttttgtacctaaaaac 41725571  T
Q  173 gtagactcgataaactttcggagagttaacactcaattt 211  Q
    ||| ||| | |||  |  |||||||||||||||| ||||    
T  41725570 gtaaactaggtaa--tcacggagagttaacactcgattt 41725534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 84 - 182
Target Start/End: Complemental strand, 51967374 - 51967276
Alignment:
Q  84 gtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcga 182  Q
    ||||||||||||||||| ||||||||| ||||||||  |||| ||||||||||||||||||| |||||||| |||||  ||||||||| ||| ||||||    
T  51967374 gtgttaactcggtcaaactcgtcaaacttttcgatttcaccaaaaaccgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcga 51967276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 59 - 216
Target Start/End: Complemental strand, 37916360 - 37916217
Alignment:
Q  59 ggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattt 158  Q
    ||||||||||||| ||||||| ||||||||||||| |||||| |||| ||||||| ||||| ||||||||||||||            ||||||| ||||    
T  37916360 ggtcgagtttacacgagtttactgagtgttaactcagtcaaactcgttaaaccttccgattttaccagaaaccgag------------ttaacacaattt 37916273  T
Q  159 tggtacctaaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    | |||| |||||||||| |||||||||  | |||||||||||||||||||||| ||||    
T  37916272 ttgtacataaaaatgtaaactcgataa--tctcggagagttaacactcaatttgcgga 37916217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 67 - 211
Target Start/End: Complemental strand, 50018755 - 50018613
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  |||||||||||| |||||  || | ||||||| | ||| ||||||||||||| |||||||| || |||||| |||||| ||||||    
T  50018755 ttacacgagtttaccgagtgttaactctgtcaatctctttaaaccttccaattttaccagaaaccgattttacctcagagttaacatgatttttgtacct 50018656  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaattt 211  Q
    ||||||||| ||||| |||  | ||||||||||||||||| ||||    
T  50018655 aaaaatgtaaactcggtaa--tctcggagagttaacactcgattt 50018613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 169
Target Start/End: Original strand, 42937406 - 42937502
Alignment:
Q  73 gagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaa 169  Q
    |||||||  ||||||||||||||||||| ||||||||| |||||||| ||||||||| ||||||||||||||| |||| ||| |||| | |||||||    
T  42937406 gagtttacggagtgttaactcggtcaaactcgtcaaacttttcgattttaccagaaatcgagtttacctccgagttaaaacgcttttagcacctaaa 42937502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 67 - 216
Target Start/End: Original strand, 30966981 - 30967128
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  |||||||||||  |||||| |||| ||||||| | ||| ||||||||||| | |||| ||| || ||||||||||||| ||||||    
T  30966981 ttacacgagtttaccgagtgttaacttagtcaaactcgttaaaccttccaattttaccagaaaccaattttatctcagagttaacacgatttttgtacct 30967080  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||| ||| ||||| |||  | ||||||||||||||||| |||| ||||    
T  30967081 aaaaacgtaaactcggtaa--tctcggagagttaacactcgatttgcgga 30967128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 104 - 169
Target Start/End: Complemental strand, 33138877 - 33138812
Alignment:
Q  104 gtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaa 169  Q
    |||||||||| ||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  33138877 gtcaaaccttccgattttaccagaaatcgagtttacctccgagttaacacgattttggtacctaaa 33138812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 86 - 212
Target Start/End: Complemental strand, 871905 - 871781
Alignment:
Q  86 gttaactcg-gtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcgata 184  Q
    ||||||||| |||||| ||||||||| || ||||| ||||||||| ||||||||||||||| || |||||| ||||||||||||||| ||| ||||| ||    
T  871905 gttaactcgagtcaaactcgtcaaacattccgattttaccagaaatcgagtttacctccgagttgacacga-tttggtacctaaaaacgtaaactcggta 871807  T
Q  185 aactttcggagagttaacactcaattta 212  Q
    |||  |||  |||||||||||| |||||    
T  871806 aac--tcgacgagttaacactcgattta 871781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 83 - 216
Target Start/End: Complemental strand, 23987743 - 23987613
Alignment:
Q  83 agtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcga 182  Q
    ||||||||||| |||||| |||| ||||||| | ||| ||||||||||| | |||||||| || ||||||||||||| ||||||||||| ||| |||||     
T  23987743 agtgttaactcagtcaaactcgttaaaccttccaattttaccagaaaccaa-tttacctcagagttaacacgatttttgtacctaaaaacgtaaactcgg 23987645  T
Q  183 taaactttcggagagttaacactcaatttacgga 216  Q
    |||  | |||||||| |||||||| |||| ||||    
T  23987644 taa--tctcggagaggtaacactcgatttgcgga 23987613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 84 - 171
Target Start/End: Complemental strand, 9972870 - 9972783
Alignment:
Q  84 gtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaa 171  Q
    ||||||||||||||||| ||||||||| || |||||  |||| ||||||||||||||||||| || ||||| |||||  |||||||||    
T  9972870 gtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaaaccgagtttacctccgagtttacacgtttttgccacctaaaaa 9972783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 102 - 216
Target Start/End: Complemental strand, 32889975 - 32889863
Alignment:
Q  102 tcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcgataaactttcggagagttaa 201  Q
    ||||||||||||  |||| |||||||||  |||||||| ||  | ||||||||||||||||||||||| | ||| ||||| ||||  |||||||||||||    
T  32889975 tcgtcaaaccttctgattttaccagaaattgagtttacatcaaagttaacacgattttggtacctaaacacgtaaactcggtaaa--ttcggagagttaa 32889878  T
Q  202 cactcaatttacgga 216  Q
    ||||| |||| ||||    
T  32889877 cactcgatttgcgga 32889863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 180
Target Start/End: Complemental strand, 55165670 - 55165526
Alignment:
Q  45 ttagatgtaaacttggtcgagtttacatgagtttattgagt--------gttaactcg-gtcaaattcgtcaaacctttcgattataccagaaaccgagt 135  Q
    ||||| ||||||||||||||||||||| |||||||||||||        ||||||||| |||||| ||||||||| ||  |||| ||||| ||| | |||    
T  55165670 ttagacgtaaacttggtcgagtttacacgagtttattgagtttgatcgagttaactcgagtcaaactcgtcaaacattctgattttaccataaatcaagt 55165571  T
Q  136 ttacctccgaattaacacgattttggtacctaaaaatgtagactc 180  Q
    |||||||| | |||| ||||||||||||| |||||| ||| ||||    
T  55165570 ttacctccaagttaatacgattttggtacgtaaaaacgtaaactc 55165526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 171
Target Start/End: Original strand, 23170738 - 23170824
Alignment:
Q  85 tgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaa 171  Q
    |||||||||||||||| ||||||||| ||||||||  |||| |||||||  ||||||||||||||||||  |||||  |||||||||    
T  23170738 tgttaactcggtcaaactcgtcaaacttttcgatttcaccaaaaaccgaaattacctccgaattaacacatttttgccacctaaaaa 23170824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 181
Target Start/End: Original strand, 6487324 - 6487421
Alignment:
Q  84 gtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcg 181  Q
    ||||| ||||||||||| ||||||||| || |||||  |||| ||| ||||||||||||||| |||||||| |||||  ||||||||| ||| |||||    
T  6487324 gtgttcactcggtcaaactcgtcaaactttccgatttcaccaaaaatcgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcg 6487421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 67 - 211
Target Start/End: Original strand, 32683666 - 32683807
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  ||||||||||||  ||||| |||| ||||||| | ||| || ||||||||||  |||||||  ||||||||||||||| ||||||    
T  32683666 ttacacgagtttaccgagtgttaactcattcaaactcgttaaaccttccaattttaacagaaaccgatcttacctcataattaacacgatttttgtacct 32683765  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaattt 211  Q
    ||||| ||| ||||| |||  | || |||||||||||||| ||||    
T  32683766 aaaaacgta-actcggtaa--tctctgagagttaacactcgattt 32683807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 181
Target Start/End: Complemental strand, 40162886 - 40162789
Alignment:
Q  84 gtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcg 181  Q
    ||||||||||||||||| ||||||||| || |||||  |||  |||||||||||| ||||||||| ||||| |||||  ||||||||| ||| |||||    
T  40162886 gtgttaactcggtcaaactcgtcaaactttccgatttcaccgaaaaccgagtttatctccgaatttacacgtttttgccacctaaaaacgtaaactcg 40162789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 181
Target Start/End: Complemental strand, 54561316 - 54561219
Alignment:
Q  84 gtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcg 181  Q
    |||||||||||||||||  |||||||| || |||||  |||| ||||||||||||||||||| || ||| | |||||  ||||||||||||| |||||    
T  54561316 gtgttaactcggtcaaacacgtcaaactttccgatttcaccaaaaaccgagtttacctccgagtttacatgtttttgccacctaaaaatgtaaactcg 54561219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 181
Target Start/End: Original strand, 8563342 - 8563461
Alignment:
Q  62 cgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttgg 161  Q
    |||||||||| |||||||    ||||||||||||||||| ||||||||| || |||||  | || |||||||||||| |||||| |||||||| |||||     
T  8563342 cgagtttacacgagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcatcaaaaaccgagtttatctccgagttaacacgtttttgt 8563441  T
Q  162 tacctaaaaatgtagactcg 181  Q
     | ||||||| ||| |||||    
T  8563442 catctaaaaacgtaaactcg 8563461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 211
Target Start/End: Original strand, 54853120 - 54853256
Alignment:
Q  73 gagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaat 172  Q
    |||||||  ||||||||||||  ||||| |||| |||||||   ||| ||| ||||||||| |||||||| || ||||||| ||||| |||| ||||||     
T  54853120 gagtttaccgagtgttaactcaatcaaactcgttaaaccttctaattttacgagaaaccgattttacctcagagttaacacaatttttgtacataaaaag 54853219  T
Q  173 gtagactcgataaactttcggagagttaacactcaattt 211  Q
    ||| ||||| |||  | ||||||||||||||||| ||||    
T  54853220 gtaaactcggtaa--tctcggagagttaacactcgattt 54853256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 56423982 - 56424078
Alignment:
Q  85 tgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcg 181  Q
    |||||||| ||||||| || |||||| || |||||  || | ||||||||||||||||||| |||||||| |||||  ||||||||| ||| |||||    
T  56423982 tgttaacttggtcaaactcatcaaactttccgatttcactaaaaaccgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcg 56424078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 182
Target Start/End: Complemental strand, 26448728 - 26448630
Alignment:
Q  84 gtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcga 182  Q
    ||||||||||||||||| ||||||||| || |||||  |||| |||   ||||||||||||| || ||| | |||||  ||||||||||||| ||||||    
T  26448728 gtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaaattaagtttacctccgagtttacatgtttttgccacctaaaaatgtaaactcga 26448630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 139
Target Start/End: Original strand, 29966401 - 29966455
Alignment:
Q  85 tgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttac 139  Q
    |||||||||||||||| ||||| ||| ||||||||  |||| |||||||||||||    
T  29966401 tgttaactcggtcaaactcgtcgaacttttcgatttcaccaaaaaccgagtttac 29966455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 180
Target Start/End: Original strand, 40487703 - 40487761
Alignment:
Q  122 accagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactc 180  Q
    |||| ||||||||||||||||||| |||||||| |||||  ||||||||| ||| ||||    
T  40487703 accaaaaaccgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactc 40487761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 181
Target Start/End: Complemental strand, 14334491 - 14334394
Alignment:
Q  84 gtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcg 181  Q
    ||||||||||||||||| | |   ||| || ||||| ||||| ||| | ||||||| ||||| || || ||||||||||||||||||| ||| |||||    
T  14334491 gtgttaactcggtcaaactaggtcaactttccgattttaccaaaaaacaagtttacgtccgagtttacgcgattttggtacctaaaaacgtaaactcg 14334394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 41470370 - 41470419
Alignment:
Q  122 accagaaaccgagtttacctccgaattaacacgattttggtacctaaaaa 171  Q
    |||| ||||||||||||||||||| |||||||| |||||  |||||||||    
T  41470370 accaaaaaccgagtttacctccgagttaacacgtttttgccacctaaaaa 41470419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 169
Target Start/End: Original strand, 46862941 - 46863006
Alignment:
Q  104 gtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaa 169  Q
    |||||||||||||||| ||||||||| ||| ||||| ||  | ||||||| ||||| |||||||||    
T  46862941 gtcaaacctttcgattttaccagaaatcgaatttacttcatagttaacacaattttagtacctaaa 46863006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 59 - 211
Target Start/End: Original strand, 39266 - 39416
Alignment:
Q  59 ggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattt 158  Q
    ||||||||||||| ||||||||  |||| |||||| |||||| |||||||||||||||||| |||||||||||||||| ||||| |  ||||||||||||    
T  39266 ggtcgagtttacacgagtttatcaagtgctaactcagtcaaactcgtcaaacctttcgattttaccagaaaccgagttgacctcagggttaacacgattt 39365  T
Q  159 tggtacctaaaaatgtagactcgataaactttcggagagttaacactcaattt 211  Q
    ||||||||||||| ||| ||||| |||  | ||||||||||||||||| ||||    
T  39366 tggtacctaaaaacgtaaactcggtaa--tctcggagagttaacactcgattt 39416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 51 - 216
Target Start/End: Original strand, 5651158 - 5651321
Alignment:
Q  51 gtaaacttggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaa 150  Q
    ||||||| || ||| |||||| ||||||| |||||||||||||||||||| ||||||||| |||| |||  |||||||| ||||||||||||||| ||||    
T  5651158 gtaaactcggccgattttacacgagtttactgagtgttaactcggtcaaactcgtcaaacttttcaatttcaccagaaatcgagtttacctccgagttaa 5651257  T
Q  151 cacgattttggtacctaaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||||||||||||||||| | ||| | |||||||||  ||| || |||||||||| |||| ||||    
T  5651258 cacgattttggtacctaaacacgtaaaatcgataaac--tcgaagtgttaacactcgatttgcgga 5651321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 67 - 211
Target Start/End: Complemental strand, 37014417 - 37014275
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  ||||||||||||||||||| |||| ||||||||| ||| ||||||||||||| |||||||| || ||||||||||||| ||||||    
T  37014417 ttacacgagtttaccgagtgttaactcggtcaaactcgttaaacctttcaattttaccagaaaccgattttacctcagagttaacacgatttttgtacct 37014318  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaattt 211  Q
    ||||||||| ||||| |||  | ||||||||||||||||| ||||    
T  37014317 aaaaatgtaaactcggtaa--tctcggagagttaacactcgattt 37014275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 59 - 216
Target Start/End: Original strand, 4240097 - 4240252
Alignment:
Q  59 ggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattt 158  Q
    ||||||||||||| |||||||  |||||||||||  |||||| |||| ||||||| ||||| |||||||||| ||||||||||| || ||||||||||||    
T  4240097 ggtcgagtttacacgagtttaccgagtgttaactttgtcaaactcgttaaaccttccgattttaccagaaacggagtttacctcagagttaacacgattt 4240196  T
Q  159 tggtacctaaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    | | ||||||||| ||| ||||| |||  | || ||||||||||||||||||| ||||    
T  4240197 ttgcacctaaaaacgtaaactcggtaa--tctcagagagttaacactcaatttgcgga 4240252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 86 - 188
Target Start/End: Original strand, 16548850 - 16548953
Alignment:
Q  86 gttaactcg-gtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcgata 184  Q
    ||||||||| |||||||||||||||| |||||||| |||||||||  |||||||||||||| || |||||||||||||||||||||| ||| ||||||||    
T  16548850 gttaactcgagtcaaattcgtcaaacatttcgattttaccagaaattgagtttacctccgagttgacacgattttggtacctaaaaacgtaaactcgata 16548949  T
Q  185 aact 188  Q
    ||||    
T  16548950 aact 16548953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 66 - 188
Target Start/End: Original strand, 7125151 - 7125273
Alignment:
Q  66 tttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacc 165  Q
    |||||| ||||||| |||||||||||||||||||| ||||||||| || ||||| ||||||||| ||||||||||||||| |||||||| |||| | |||    
T  7125151 tttacacgagtttactgagtgttaactcggtcaaactcgtcaaactttccgattttaccagaaatcgagtttacctccgagttaacacgtttttagcacc 7125250  T
Q  166 taaaaatgtagactcgataaact 188  Q
    |||| | ||| ||||| ||||||    
T  7125251 taaacacgtaaactcggtaaact 7125273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 39852933 - 39852786
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  |||||||||||| |||||| |||| ||||||| | ||| ||||| ||| ||| |||||||| || ||||||||||||| ||||||    
T  39852933 ttacacgagtttaccgagtgttaactccgtcaaactcgttaaaccttccaattttaccaaaaatcgattttacctcagagttaacacgatttttgtacct 39852834  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||||||| |||||||||  | ||||||||||||||||| |||| ||||    
T  39852833 aaaaatgtaaactcgataa--tctcggagagttaacactcgatttgcgga 39852786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 13926494 - 13926347
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  |||||||||||  |||||| || | ||||||| | ||| ||||||||||||| |||||||| || ||||||||||||| ||||||    
T  13926494 ttacacgagtttaccgagtgttaacttagtcaaactccttaaaccttccaattttaccagaaaccgattttacctcagagttaacacgatttttgtacct 13926395  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||| ||| |||||||||  | ||||||||||||||||| |||| ||||    
T  13926394 aaaaacgtaaactcgataa--tctcggagagttaacactcgatttgcgga 13926347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 73 - 188
Target Start/End: Original strand, 28623160 - 28623275
Alignment:
Q  73 gagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaat 172  Q
    ||||||| |||||||||||||||||||| ||||||||| || | ||| ||||||||| |||||||| |||||| |||||||| |||| | ||||||| |     
T  28623160 gagtttactgagtgttaactcggtcaaactcgtcaaactttgcaattttaccagaaatcgagtttatctccgagttaacacgtttttagcacctaaacac 28623259  T
Q  173 gtagactcgataaact 188  Q
    ||| ||||||||||||    
T  28623260 gtaaactcgataaact 28623275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 181
Target Start/End: Original strand, 1460791 - 1460899
Alignment:
Q  73 gagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaat 172  Q
    |||||||  |||||||||||| |||||| |||| || |||| ||||| |||||||||||||||||||||| || ||||||| ||||| |||||||||||     
T  1460791 gagtttaccgagtgttaactcagtcaaactcgttaagccttccgattttaccagaaaccgagtttacctctgagttaacacaatttttgtacctaaaaac 1460890  T
Q  173 gtagactcg 181  Q
    ||| |||||    
T  1460891 gtaaactcg 1460899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 51 - 216
Target Start/End: Complemental strand, 29758834 - 29758673
Alignment:
Q  51 gtaaacttggtcgagtttacatgagtttattgagtgttaactcg-gtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaatta 149  Q
    ||||||| |||||||||||||  ||||||  ||||  ||||||| |||||| ||||||||| || ||||| ||||||||| | | | ||||||||| |||    
T  29758834 gtaaactcggtcgagtttacacaagtttaccgagt--taactcgagtcaaactcgtcaaacattccgatt-taccagaaatcaaatctacctccgagtta 29758738  T
Q  150 acacgattttggtacctaaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||||||||| |||||||||| ||| |||||||||||||     ||||||||||||||||||||||    
T  29758737 acacgattttgatacctaaaaacgtaaactcgataaactt--aacgagttaacactcaatttacgga 29758673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 82 - 216
Target Start/End: Original strand, 4549912 - 4550044
Alignment:
Q  82 gagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcg 181  Q
    |||| ||||||| |||||| |||| ||||||| | ||| ||||||||||||| |||||||| || ||||||||||||| ||||||||| | ||| |||||    
T  4549912 gagtattaactcagtcaaactcgttaaaccttccaattttaccagaaaccgattttacctcagagttaacacgatttttgtacctaaacacgtaaactcg 4550011  T
Q  182 ataaactttcggagagttaacactcaatttacgga 216  Q
     |||  | ||||||||||||||||| |||| ||||    
T  4550012 gtaa--tctcggagagttaacactcgatttgcgga 4550044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 82 - 216
Target Start/End: Complemental strand, 5949659 - 5949528
Alignment:
Q  82 gagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcg 181  Q
    |||||||||||| |||||| |||| ||||||| | ||| ||||||||||||| |||||||| || ||||||||||||| ||||||||||| ||| ||| |    
T  5949659 gagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaaccgattttacctcagagttaacacgatttttgtacctaaaaacgtaaact-g 5949561  T
Q  182 ataaactttcggagagttaacactcaatttacgga 216  Q
    ||||  | |||||||||||| |||| |||| ||||    
T  5949560 ataa--tctcggagagttaatactcgatttgcgga 5949528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 67 - 216
Target Start/End: Original strand, 13999733 - 13999880
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  |||||||||||| |||||| |||| ||||||| | ||| ||||||||||||| |||| |||  | ||||||||||||| ||||||    
T  13999733 ttacacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaaccgattttatctcaaagttaacacgatttttgtacct 13999832  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||||||  |||| ||||  | ||||||| ||||||||| |||| ||||    
T  13999833 aaaaatgtcaactccataa--tctcggagatttaacactcgatttgcgga 13999880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 67 - 216
Target Start/End: Original strand, 40013344 - 40013491
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  |||||||||||| |||||  | || ||||||| | ||| ||||||||||||| |||||||| || |||||||||||||  ||| |    
T  40013344 ttacacgagtttaccgagtgttaactcagtcaatcttgttaaaccttccaattttaccagaaaccgattttacctcagagttaacacgatttttatactt 40013443  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||||||| ||||| |||  | ||||||||||||||||| |||| ||||    
T  40013444 aaaaatgtaaactcggtaa--tctcggagagttaacactcgatttgcgga 40013491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 84 - 181
Target Start/End: Original strand, 2675078 - 2675175
Alignment:
Q  84 gtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcg 181  Q
    ||||||||||||||||| ||||||||| ||||||||  |||| ||| ||||||||||||||| |||||||| |||||  ||||||||| ||| |||||    
T  2675078 gtgttaactcggtcaaactcgtcaaacttttcgatttcaccaaaaatcgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcg 2675175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 211
Target Start/End: Original strand, 29716774 - 29716920
Alignment:
Q  63 gagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggt 162  Q
    ||||||||| |||||||   |||||| || || || || ||||||||||||  |||| ||||||||| | ||||||||| ||| |||||||||||||| |    
T  29716774 gagtttacacgagtttaccaagtgttcacccgatccaactcgtcaaaccttctgattttaccagaaatcaagtttaccttcgagttaacacgattttgat 29716873  T
Q  163 acctaaaaatgtagactcgataaactttcggagagttaacactcaattt 211  Q
    ||||||||| ||| ||||  |||||||  ||||||||||||||| ||||    
T  29716874 acctaaaaacgtaaactccgtaaactt--ggagagttaacactcgattt 29716920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 84 - 160
Target Start/End: Original strand, 21238763 - 21238839
Alignment:
Q  84 gtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttg 160  Q
    ||||||||||||||||| ||||||||| || ||||| ||||| ||||||||||||||||||| |||||||| |||||    
T  21238763 gtgttaactcggtcaaactcgtcaaactttccgattttaccaaaaaccgagtttacctccgagttaacacgtttttg 21238839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 51 - 216
Target Start/End: Complemental strand, 34218590 - 34218436
Alignment:
Q  51 gtaaacttggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaa 150  Q
    ||||||| ||||||||||||| || |||| ||||| ||||||||||||||         ||||  |||| || |||||||||| ||||||| ||||||||    
T  34218590 gtaaactcggtcgagtttacacgaatttactgagtattaactcggtcaaa---------ccttctgattttagcagaaaccgaatttaccttcgaattaa 34218500  T
Q  151 cacgattttggtacctaaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||||||||||| ||||||| ||| ||| | |||||  || ||| ||||||||||||||| ||||    
T  34218499 cacgattttggtatctaaaaacgtaaacttggtaaac--tcagagtgttaacactcaatttgcgga 34218436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 159
Target Start/End: Original strand, 37798113 - 37798199
Alignment:
Q  73 gagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgatttt 159  Q
    |||||||  ||||||||||||||||||| ||||||||| |||||||| |||||||||  ||||||||||  || |||||||| ||||    
T  37798113 gagtttaccgagtgttaactcggtcaaactcgtcaaacttttcgattttaccagaaattgagtttacctttgagttaacacgttttt 37798199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 62 - 171
Target Start/End: Original strand, 33892824 - 33892933
Alignment:
Q  62 cgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttgg 161  Q
    |||||||||| |||||||    ||||||||||||||||| ||||||||| || |||||  | || ||| ||||||||||||||| |||||||| |||||     
T  33892824 cgagtttacacgagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcatcaaaaatcgagtttacctccgagttaacacgtttttgc 33892923  T
Q  162 tacctaaaaa 171  Q
     |||||||||    
T  33892924 cacctaaaaa 33892933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 90 - 182
Target Start/End: Complemental strand, 34909683 - 34909591
Alignment:
Q  90 actcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcga 182  Q
    ||||||||||| || |||||| || |||||  |||| | |||||||||||||||||||||||||| |||||  ||||||||| ||| ||||||    
T  34909683 actcggtcaaactcctcaaactttccgatttcaccaaagaccgagtttacctccgaattaacacgtttttgccacctaaaaacgtaaactcga 34909591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 21489965 - 21489892
Alignment:
Q  116 gattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcgataaactt 189  Q
    |||| ||||||||| | |||||| || |||||| |||||||||||||||||||||||||| | || ||||||||    
T  21489965 gattttaccagaaatcaagtttatcttcgaattgacacgattttggtacctaaaaatgtaaaatcaataaactt 21489892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 142
Target Start/End: Original strand, 1151930 - 1152005
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctc 142  Q
    ||||| |||||||  |||||||||||| |||||| |||| ||||||| | ||| ||||||||||||| || |||||    
T  1151930 ttacacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaaccgatttcacctc 1152005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 25868876 - 25868809
Alignment:
Q  104 gtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaa 171  Q
    ||||||| || |||||  |||| ||||||||||||||||||| |||||||| |||||  |||||||||    
T  25868876 gtcaaactttccgatttcaccaaaaaccgagtttacctccgagttaacacgtttttgccacctaaaaa 25868809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 153
Target Start/End: Complemental strand, 31913628 - 31913526
Alignment:
Q  51 gtaaacttggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaa 150  Q
    ||||||| ||||||||||||  |||||||     |||||||||| ||||||||| | ||| ||||||||  |||| ||| ||||||||||||| | ||||    
T  31913628 gtaaactcggtcgagtttactcgagtttaacacatgttaactcgatcaaattcgacgaacatttcgatttcaccaaaaatcgagtttacctccaagttaa 31913529  T
Q  151 cac 153  Q
    |||    
T  31913528 cac 31913526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 180
Target Start/End: Original strand, 16497707 - 16497836
Alignment:
Q  51 gtaaacttggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaa 150  Q
    |||||||  ||||| ||||||||||||||     |||||| ||||||||| ||||||||| || |||||  | || ||| |||||||| ||  |||||||    
T  16497707 gtaaactctgtcgattttacatgagtttaacacatgttaagtcggtcaaactcgtcaaacattccgatttcagcaaaaatcgagtttatctttgaattaa 16497806  T
Q  151 cacgattttggtacctaaaaatgtagactc 180  Q
    |||  |||||| ||||||||| ||| ||||    
T  16497807 cacatttttggcacctaaaaacgtaaactc 16497836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1128 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold1128
Description:

Target: scaffold1128; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 64 - 216
Target Start/End: Original strand, 888 - 1038
Alignment:
Q  64 agtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggta 163  Q
    |||||||| ||||||| | |||||||||||||||||| || |||||| || ||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  888 agtttacacgagtttactaagtgttaactcggtcaaactcatcaaactttccgattttaccagaaaccgagtttacctccgagttaacacgattttggta 987  T
Q  164 cctaaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    |||||| | ||| ||||| |||||  || ||| |||||||||| |||| ||||    
T  988 cctaaacacgtaaactcggtaaac--tcagagtgttaacactcgatttgcgga 1038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 52 - 216
Target Start/End: Complemental strand, 16438835 - 16438673
Alignment:
Q  52 taaacttggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaac 151  Q
    |||||| | ||||||||||| |||||||  ||||| ||||||| | ||| |||||||||||| ||||| ||||||||  ||||||||||||| | |||||    
T  16438835 taaactcgatcgagtttacacgagtttaccgagtgctaactcgattaaactcgtcaaaccttccgattttaccagaagtcgagtttacctccaagttaac 16438736  T
Q  152 acgattttggtacctaaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    |||||||| ||||||||||| ||| |||||||||||  ||||||||||||||||| |||| ||||    
T  16438735 acgatttttgtacctaaaaacgtaaactcgataaac--tcggagagttaacactcgatttgcgga 16438673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 31896199 - 31896052
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  |||||||||||| |||||| |||| ||||||| | ||| ||||||||||||| |||||||| || ||||||||||||| ||||||    
T  31896199 ttacacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaaccgattttacctcagagttaacacgatttttgtacct 31896100  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||||||| |||||||||  | ||||||| ||||||||| |||||||||    
T  31896099 aaaaatgtatactcgataa--tctcggagatttaacactcgatttacgga 31896052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 53 - 169
Target Start/End: Complemental strand, 2607023 - 2606907
Alignment:
Q  53 aaacttggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaaca 152  Q
    ||||| ||||||||||| | |||||||||||||||||||||||||||| || |||||||||  |||| ||||||||| |||||||||||| || |||| |    
T  2607023 aaactcggtcgagtttataagagtttattgagtgttaactcggtcaaactcatcaaaccttctgattttaccagaaatcgagtttacctcagagttaaaa 2606924  T
Q  153 cgattttggtacctaaa 169  Q
    |||||||||| ||||||    
T  2606923 cgattttggtgcctaaa 2606907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 73 - 216
Target Start/End: Complemental strand, 31067988 - 31067847
Alignment:
Q  73 gagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaat 172  Q
    |||||||  |||||||||||| |||||| |||| ||||||| | ||| ||||||||||||| |||||||| || ||||||||||||| ||||||||||||    
T  31067988 gagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaaccgattttacctcagagttaacacgatttttgtacctaaaaat 31067889  T
Q  173 gtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||| |||||||||  | ||||||| ||||||||| |||| ||||    
T  31067888 gtaaactcgataa--tctcggagatttaacactcgatttgcgga 31067847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 66 - 188
Target Start/End: Original strand, 1463656 - 1463778
Alignment:
Q  66 tttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacc 165  Q
    |||||| ||||||| |||||||||||||||||||| ||||||||| || ||||| ||||||||| ||||||||||||||| |||||||| |||| | |||    
T  1463656 tttacacgagtttactgagtgttaactcggtcaaactcgtcaaactttccgattttaccagaaatcgagtttacctccgagttaacacgtttttagcacc 1463755  T
Q  166 taaaaatgtagactcgataaact 188  Q
    |||| | ||| ||||| ||||||    
T  1463756 taaacacgtaaactcggtaaact 1463778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 66 - 188
Target Start/End: Complemental strand, 6788215 - 6788093
Alignment:
Q  66 tttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacc 165  Q
    |||||| ||||||| |||||||||||||||||||| ||||||||| || ||||| ||||||||| ||||||||||||||| |||||||| |||| | |||    
T  6788215 tttacacgagtttactgagtgttaactcggtcaaactcgtcaaactttccgattttaccagaaatcgagtttacctccgagttaacacgtttttagcacc 6788116  T
Q  166 taaaaatgtagactcgataaact 188  Q
    |||| | ||| ||||| ||||||    
T  6788115 taaacacgtaaactcggtaaact 6788093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 182
Target Start/End: Original strand, 31535068 - 31535161
Alignment:
Q  89 aactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcga 182  Q
    |||||||||||| |||||||||||||||||| ||||||||| ||||||| |||| || ||||||| |||||| |||||||||||||| ||||||    
T  31535068 aactcggtcaaactcgtcaaacctttcgattttaccagaaatcgagtttgcctcagagttaacacaattttgatacctaaaaatgtaaactcga 31535161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 31975644 - 31975774
Alignment:
Q  73 gagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaat 172  Q
    |||||||  |||| |||||||||||||| |||||||||||| ||||| ||| ||||| |||||||||||| || ||||||||||||||||||||||| |     
T  31975644 gagtttaccgagtcttaactcggtcaaactcgtcaaaccttccgattttacaagaaatcgagtttacctcagagttaacacgattttggtacctaaacac 31975743  T
Q  173 gtagactcgataaactttcggagagttaacact 205  Q
     || ||||  |||||  ||||||||||||||||    
T  31975744 ataaactcagtaaac--tcggagagttaacact 31975774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 73 - 216
Target Start/End: Original strand, 4200096 - 4200237
Alignment:
Q  73 gagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaat 172  Q
    |||||||  |||||||||||| |||||| |||| ||||||| | ||| ||||||||||||| |||||||| || |||||| |||||| |||| |||||||    
T  4200096 gagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaaccgattttacctcagagttaacatgatttttgtacttaaaaat 4200195  T
Q  173 gtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||| |||||||||  | ||||||| ||||||||| |||| ||||    
T  4200196 gtaaactcgataa--tctcggagatttaacactcgatttgcgga 4200237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 66 - 169
Target Start/End: Complemental strand, 3000355 - 3000252
Alignment:
Q  66 tttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacc 165  Q
    |||||| |||||||||||||||||||||| ||||| ||||||||| |  ||||| ||||| ||| ||| |||||| |||| |||||||||||||||||||    
T  3000355 tttacacgagtttattgagtgttaactcgatcaaactcgtcaaacttcccgattttaccataaatcgaatttacccccgagttaacacgattttggtacc 3000256  T
Q  166 taaa 169  Q
    ||||    
T  3000255 taaa 3000252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 82 - 216
Target Start/End: Complemental strand, 7497645 - 7497513
Alignment:
Q  82 gagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcg 181  Q
    ||||||||||||  ||||| |||| ||||||| | ||| |||||||||||||||||||||| || ||||||||||||| ||||||||||| ||| ||| |    
T  7497645 gagtgttaactcaatcaaactcgttaaaccttccaattttaccagaaaccgagtttacctcagagttaacacgatttttgtacctaaaaacgtaaacttg 7497546  T
Q  182 ataaactttcggagagttaacactcaatttacgga 216  Q
    ||||  | |||||||||||||| || |||| ||||    
T  7497545 ataa--tctcggagagttaacattcgatttgcgga 7497513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 82 - 216
Target Start/End: Original strand, 14262090 - 14262222
Alignment:
Q  82 gagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcg 181  Q
    |||||||||||| |||||| |||| ||||||| | ||| ||||||||| ||| |||||||| || ||||||||||||| ||||||||||| ||| ||| |    
T  14262090 gagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaatcgattttacctcagagttaacacgatttttgtacctaaaaaagtaaactag 14262189  T
Q  182 ataaactttcggagagttaacactcaatttacgga 216  Q
    ||||  | ||||||||||||||||| |||| ||||    
T  14262190 ataa--tctcggagagttaacactcgatttgcgga 14262222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 188
Target Start/End: Original strand, 10113772 - 10113887
Alignment:
Q  73 gagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaat 172  Q
    ||||||| ||||| | |||||||||||| ||||||||| || ||||| ||||| ||| ||||||||||||||| |||||||| |||| | ||||||| |     
T  10113772 gagtttactgagtctaaactcggtcaaactcgtcaaactttccgattttaccaaaaaacgagtttacctccgagttaacacgtttttaggacctaaacac 10113871  T
Q  173 gtagactcgataaact 188  Q
    ||| ||||| ||||||    
T  10113872 gtaaactcggtaaact 10113887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 181
Target Start/End: Original strand, 28900863 - 28900938
Alignment:
Q  106 caaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcg 181  Q
    |||||||| ||||| ||||||||| |||||||||||| || ||||||||||||||||||||||| ||||| |||||    
T  28900863 caaaccttccgattttaccagaaatcgagtttacctcagagttaacacgattttggtacctaaacatgtaaactcg 28900938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 216
Target Start/End: Original strand, 34758733 - 34758865
Alignment:
Q  82 gagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcg 181  Q
    |||||||||||| |||||| | || ||||||| | ||| || |||||||||| |||||||| || ||||||||||||| ||||||||||| ||| ||| |    
T  34758733 gagtgttaactcagtcaaacttgttaaaccttccaattttatcagaaaccgattttacctcagagttaacacgatttttgtacctaaaaacgtaaacttg 34758832  T
Q  182 ataaactttcggagagttaacactcaatttacgga 216  Q
    ||||  | ||||||||||||| ||| |||| ||||    
T  34758833 ataa--tctcggagagttaacgctcgatttgcgga 34758865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 67 - 216
Target Start/End: Original strand, 30384703 - 30384850
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  |||||||||||| |||||| |||| ||||||| | ||| || ||||||| || |||||||  || ||||||||||||| ||||||    
T  30384703 ttacacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttatcagaaactgattttaccttagagttaacacgatttttgtacct 30384802  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    |||||  || ||||| |||  | ||||||||||||||||| |||| ||||    
T  30384803 aaaaacataaactcggtaa--tctcggagagttaacactcgatttgcgga 30384850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 84 - 182
Target Start/End: Original strand, 31996251 - 31996349
Alignment:
Q  84 gtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcga 182  Q
    ||||||||||||||||| ||||||||| || |||||  |||| ||| ||||||||||||||| |||||||| |||||  ||||||||| ||| ||||||    
T  31996251 gtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaaatcgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcga 31996349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 86 - 181
Target Start/End: Original strand, 8779586 - 8779681
Alignment:
Q  86 gttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcg 181  Q
    ||||||| ||||||| ||||||||| || |||||  |||| ||||||||||||||||||| |||||||| |||||  ||||||||| ||| |||||    
T  8779586 gttaacttggtcaaactcgtcaaactttccgatttcaccaaaaaccgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcg 8779681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 180
Target Start/End: Complemental strand, 13461459 - 13461374
Alignment:
Q  95 gtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactc 180  Q
    |||||| ||||||||| ||  |||| ||||| ||||||||||||||||||| || ||||||||||| ||| |||||| ||| ||||    
T  13461459 gtcaaactcgtcaaacattctgattttaccaaaaaccgagtttacctccgagttgacacgattttgatacataaaaacgtaaactc 13461374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 171
Target Start/End: Complemental strand, 21199650 - 21199564
Alignment:
Q  85 tgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaa 171  Q
    |||||||||||||||| ||||||||| || |||||  |||| ||| |||||||||||  || |||||||| |||||  |||||||||    
T  21199650 tgttaactcggtcaaactcgtcaaactttccgatttcaccaaaaatcgagtttaccttggagttaacacggttttgccacctaaaaa 21199564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 141
Target Start/End: Complemental strand, 34773947 - 34773873
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacct 141  Q
    ||||| |||||||  |||||||||||| |||||| |||| ||||||| | ||| ||||||||||||| |||||||    
T  34773947 ttacacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaaccgattttacct 34773873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 181
Target Start/End: Original strand, 7835387 - 7835464
Alignment:
Q  104 gtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcg 181  Q
    ||||||| || |||||  |||| ||||||||||||||||||| |||||||| |||||  ||||||||| ||| |||||    
T  7835387 gtcaaactttccgatttcaccaaaaaccgagtttacctccgacttaacacgtttttgccacctaaaaacgtaaactcg 7835464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 160
Target Start/End: Complemental strand, 12029105 - 12028996
Alignment:
Q  51 gtaaacttggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaa 150  Q
    ||||||| ||||||||||||| ||||||| |  |||||||||  |||||| ||||||||| ||||||||  |  | ||| ||||||||||||  | ||||    
T  12029105 gtaaactcggtcgagtttacacgagtttaatacgtgttaactatgtcaaactcgtcaaacatttcgatttcaataaaaatcgagtttacctcaaagttaa 12029006  T
Q  151 cacgattttg 160  Q
    |||| |||||    
T  12029005 cacgtttttg 12028996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 154
Target Start/End: Original strand, 21010883 - 21010950
Alignment:
Q  87 ttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacg 154  Q
    |||||||||| ||| ||||||||| ||| ||||  |||| |||||||||| |||| ||||||||||||    
T  21010883 ttaactcggttaaactcgtcaaacattttgatttcaccaaaaaccgagttgaccttcgaattaacacg 21010950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 33641267 - 33641316
Alignment:
Q  51 gtaaacttggtcgagtttacatgagtttattgagtgttaactcggtcaaa 100  Q
    ||||||| ||| |||||| || |||||||| |||||||||||||||||||    
T  33641267 gtaaactcggtagagtttgcacgagtttatcgagtgttaactcggtcaaa 33641316  T

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Target: scaffold0042 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 59 - 216
Target Start/End: Original strand, 57695 - 57850
Alignment:
Q  59 ggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattt 158  Q
    ||||||||||||| |||||||  ||||||||||||  ||||| || | |||||||  |||| ||| |||||||||||||||||| || ||||||||||||    
T  57695 ggtcgagtttacacgagtttaccgagtgttaactcaatcaaactcattaaaccttctgattttactagaaaccgagtttacctcagagttaacacgattt 57794  T
Q  159 tggtacctaaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    | ||||||||||| ||| ||||| |||  | ||||||||||||||||| |||| ||||    
T  57795 ttgtacctaaaaacgtaaactcggtaa--tctcggagagttaacactcgatttgcgga 57850  T

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Target: scaffold0013 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 82 - 216
Target Start/End: Complemental strand, 89379 - 89247
Alignment:
Q  82 gagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcg 181  Q
    ||||||||||||| ||||| |||||||||||| | ||| ||||||||| ||||||||||| | | |||||||||| ||||||||||||||  || |||||    
T  89379 gagtgttaactcgatcaaactcgtcaaaccttccaattttaccagaaatcgagtttaccttcaagttaacacgatattggtacctaaaaacttaaactcg 89280  T
Q  182 ataaactttcggagagttaacactcaatttacgga 216  Q
    ||||||  ||  ||||||||||||| |||||||||    
T  89279 ataaac--tcacagagttaacactcgatttacgga 89247  T

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Target: scaffold0543 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 11087 - 10940
Alignment:
Q  67 ttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacct 166  Q
    ||||| |||||||  |||||||||||| |||||| |||| ||||||| | ||| ||||| ||| ||| |||||||| || ||||||||||||| ||||||    
T  11087 ttacacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccaaaaatcgaatttacctcagagttaacacgatttttgtacct 10988  T
Q  167 aaaaatgtagactcgataaactttcggagagttaacactcaatttacgga 216  Q
    ||||||||| ||||| |||  | ||||||||||||||||| |||| ||||    
T  10987 aaaaatgtaaactcggtaa--tctcggagagttaacactcgatttgcgga 10940  T

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Target: scaffold1504 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold1504
Description:

Target: scaffold1504; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 82 - 211
Target Start/End: Complemental strand, 1414 - 1287
Alignment:
Q  82 gagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcg 181  Q
    |||||||||||| |||||| |||| ||||||| | ||| ||| ||||||||| |||||||| || ||||||||||||| ||||||||||| ||| |||||    
T  1414 gagtgttaactcagtcaaactcgttaaaccttccaattttacaagaaaccgattttacctcagagttaacacgatttttgtacctaaaaacgtaaactcg 1315  T
Q  182 ataaactttcggagagttaacactcaattt 211  Q
     |||  | ||||||||||||||||| ||||    
T  1314 gtaa--tctcggagagttaacactcgattt 1287  T

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Target: scaffold0573 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 181
Target Start/End: Complemental strand, 8931 - 8856
Alignment:
Q  106 caaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactcg 181  Q
    |||||||| ||||| ||||||||| |||||||||||| || ||||||||||||||||||||||| ||||| |||||    
T  8931 caaaccttccgattttaccagaaatcgagtttacctcagagttaacacgattttggtacctaaacatgtaaactcg 8856  T

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Target: scaffold0383 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0383
Description:

Target: scaffold0383; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 83 - 153
Target Start/End: Original strand, 16684 - 16754
Alignment:
Q  83 agtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacac 153  Q
    ||||||||||| |||||| |||| ||||||||||||| |||||||||||||||||||||| || |||||||    
T  16684 agtgttaactcagtcaaactcgttaaacctttcgattttaccagaaaccgagtttacctcagagttaacac 16754  T

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Target: scaffold0152 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 83 - 153
Target Start/End: Original strand, 20920 - 20990
Alignment:
Q  83 agtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacac 153  Q
    ||||||||||| |||||| |||| ||||||||||||| |||||||||||||||||||||| || |||||||    
T  20920 agtgttaactcagtcaaactcgttaaacctttcgattttaccagaaaccgagtttacctcagagttaacac 20990  T

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Target: scaffold0152; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 83 - 153
Target Start/End: Complemental strand, 28881 - 28811
Alignment:
Q  83 agtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacac 153  Q
    ||||||||||| |||||| |||| ||||||||||||| |||||||||||||||||||||| || |||||||    
T  28881 agtgttaactcagtcaaactcgttaaacctttcgattttaccagaaaccgagtttacctcagagttaacac 28811  T

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Target: scaffold0421 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 153
Target Start/End: Complemental strand, 1796 - 1727
Alignment:
Q  84 gtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacac 153  Q
    ||||||||||||||||| ||||||||| || |||||  |||| ||| ||||||||||||||| |||||||    
T  1796 gtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaaatcgagtttacctccgagttaacac 1727  T

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Target: scaffold0246 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 181
Target Start/End: Complemental strand, 1486 - 1367
Alignment:
Q  62 cgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgattttgg 161  Q
    |||||||||| |||||||    ||||||||||||| ||| ||||||||| || |||||  || | ||||||||||||||||| | |||||| | |||||     
T  1486 cgagtttacacgagtttaacacgtgttaactcggttaaactcgtcaaactttccgatttcactaaaaaccgagtttacctccaagttaacatgtttttgc 1387  T
Q  162 tacctaaaaatgtagactcg 181  Q
     ||||||||| ||| |||||    
T  1386 cacctaaaaacgtaaactcg 1367  T

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Target: scaffold0246; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 180
Target Start/End: Original strand, 25642 - 25700
Alignment:
Q  122 accagaaaccgagtttacctccgaattaacacgattttggtacctaaaaatgtagactc 180  Q
    |||| ||||||||||||||||||| |||||||| |||||  ||||||||| ||| ||||    
T  25642 accaaaaaccgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactc 25700  T

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Target: scaffold0347 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 159
Target Start/End: Complemental strand, 15204 - 15132
Alignment:
Q  87 ttaactcggtcaaattcgtcaaacctttcgattataccagaaaccgagtttacctccgaattaacacgatttt 159  Q
    ||||||| |||||| |||| ||||||| | ||| ||||| ||||||| |||||||| || |||||||||||||    
T  15204 ttaactcagtcaaactcgttaaaccttccaattttaccataaaccgattttacctcagagttaacacgatttt 15132  T

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