View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7061_low_3 (Length: 699)

Name: NF7061_low_3
Description: NF7061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7061_low_3
NF7061_low_3
[»] chr5 (8 HSPs)
chr5 (20-688)||(37402468-37403134)
chr5 (596-688)||(37531698-37531790)
chr5 (596-688)||(37592802-37592894)
chr5 (604-688)||(37695201-37695285)
chr5 (596-666)||(37638344-37638414)
chr5 (596-688)||(37710105-37710197)
chr5 (596-666)||(37822502-37822572)
chr5 (520-599)||(37394479-37394557)
[»] chr8 (2 HSPs)
chr8 (99-275)||(38239218-38239392)
chr8 (21-74)||(38239442-38239495)
[»] chr4 (3 HSPs)
chr4 (520-590)||(16844624-16844694)
chr4 (596-666)||(16844488-16844559)
chr4 (478-510)||(16844731-16844763)


Alignment Details
Target: chr5 (Bit Score: 582; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 20 - 688
Target Start/End: Complemental strand, 37403134 - 37402468
Alignment:
Q  20 gtgagcacttaaagcacttttcaattccaaaatttgtctgctttgctcttccaccttaaaagttgttaaaagtaggagtatttagagtccaaaaactagt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  37403134 gtgagcacttaaagcacttttcaattccaaaatttgtctgctttgctcttccaccttaaaagttgttaaaagtaggtgtatttagagtccaaaaactagt 37403035  T
Q  120 tggagaatagagtttaattcaagnnnnnnncatattcaaggagaacccaaagctaatattatatatcaactagaacagaatgaagtgtcttctaaacctc 219  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37403034 tggagaatagagtttaattcaagaagaaaacatattcaaggagaacccaaagctaatattatatatcaactagaacagaatgaagtgtcttctaaacctc 37402935  T
Q  220 actgcacagcttaagaactttctgaacaattttatagttgtaattagattcctgaaagttgtacctgtgctgccactaggtacatagcaagcttacttgc 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37402934 actgcacagcttaagaactttctgaacaattttatagttgtaattagattcctgaaagttgtacctgtgctgccactaggtacatagcaagcttacttgc 37402835  T
Q  320 cattttaagctatgtacaaaatagtaaaatatcaacacttattgacataatgaggatatgctttcaaaatatattcttcaaaaggttaaaaacatcaaat 419  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37402834 catttgaagctatgtacaaaatagtaaaatatcaacacttattgacataatgaggatatgctttcaaaatattttcttcaaaaggttaaaaacatcaaat 37402735  T
Q  420 tgatatacgtgagataactaacaaccaggagacaatgagatggnnnnnnnnnnnnntatcaaaagttgaagcaattaagtcttgagcattttatagtata 519  Q
    |||||||||||||||||||||||||||||||||||||||||||              |  ||||||||||||||||||||||||||||||||||||||||    
T  37402734 tgatatacgtgagataactaacaaccaggagacaatgagatggaagaaaaaaaaaaaa--aaaagttgaagcaattaagtcttgagcattttatagtata 37402637  T
Q  520 aattcatcactataaatttcttatttgtttaacaacttgaaatatataataaactggtattaaaagatatagtatataattacaaacagctgtaactaca 619  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37402636 aattcatcactataaatttcttatttgtttaacaacttgaaatatataataaactggtattaaaagatatagtatataattacaaacagctgtaactaca 37402537  T
Q  620 tatttgaaaatacaaacatcaaattaattcattcttctgcgatttgcacagtatctgttgtttgttctt 688  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37402536 tatttgaaaatacaaacatcaaattaattcattcttctgcgatttgcacagtatctgttgtttgttctt 37402468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 596 - 688
Target Start/End: Original strand, 37531698 - 37531790
Alignment:
Q  596 taattacaaacagctgtaactacatatttgaaaatacaaacatcaaattaattcattcttctgcgatttgcacagtatctgttgtttgttctt 688  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37531698 taattacaaacagctgtaactacatatttgaaaatacaaacatcaaattaattcattcttctgcgatttgcacagtatctgttgtttgttctt 37531790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 596 - 688
Target Start/End: Original strand, 37592802 - 37592894
Alignment:
Q  596 taattacaaacagctgtaactacatatttgaaaatacaaacatcaaattaattcattcttctgcgatttgcacagtatctgttgtttgttctt 688  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37592802 taattacaaacagctgtaactacatatttgaaaatacaaacatcaaattaattcattcttctgcgatttgcacagtatctgttgtttgttctt 37592894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 604 - 688
Target Start/End: Original strand, 37695201 - 37695285
Alignment:
Q  604 aacagctgtaactacatatttgaaaatacaaacatcaaattaattcattcttctgcgatttgcacagtatctgttgtttgttctt 688  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37695201 aacagctgtaactacatatttgaaaatacaaacatcaaattaattcattcttctgcgatttgcacagtatctgttgtttgttctt 37695285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 596 - 666
Target Start/End: Original strand, 37638344 - 37638414
Alignment:
Q  596 taattacaaacagctgtaactacatatttgaaaatacaaacatcaaattaattcattcttctgcgatttgc 666  Q
    ||||||||||||| |||||||||||||||||||| ||   |||| ||||||||||||||||||||||||||    
T  37638344 taattacaaacagttgtaactacatatttgaaaagaccctcatccaattaattcattcttctgcgatttgc 37638414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 596 - 688
Target Start/End: Original strand, 37710105 - 37710197
Alignment:
Q  596 taattacaaacagctgtaactacatatttgaaaatacaaacatcaaattaattcattcttctgcgatttgcacagtatctgttgtttgttctt 688  Q
    ||||||||||||| | || ||||||||||||||| || | |||| ||||||||||||||||||||||||||   |  ||||||||||||||||    
T  37710105 taattacaaacagttatatctacatatttgaaaacaccatcatccaattaattcattcttctgcgatttgcgatggctctgttgtttgttctt 37710197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 596 - 666
Target Start/End: Original strand, 37822502 - 37822572
Alignment:
Q  596 taattacaaacagctgtaactacatatttgaaaatacaaacatcaaattaattcattcttctgcgatttgc 666  Q
    ||||||||||||| |||||||||||||||||||| ||   |||| ||||||||||||||| ||||||||||    
T  37822502 taattacaaacagttgtaactacatatttgaaaagaccctcatccaattaattcattcttatgcgatttgc 37822572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 520 - 599
Target Start/End: Complemental strand, 37394557 - 37394479
Alignment:
Q  520 aattcatcactataaatttcttatttgtttaacaacttgaaatatataataaactggtattaaaagatatagtatataat 599  Q
    |||| ||||||||||||| ||||||| || | ||||||||||||||||| | ||||||| ||||||||||| ||||||||    
T  37394557 aattgatcactataaattccttatttattcatcaacttgaaatatataacacactggtactaaaagatata-tatataat 37394479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 6e-39; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 99 - 275
Target Start/End: Complemental strand, 38239392 - 38239218
Alignment:
Q  99 atttagagtccaaaaactagttggagaatagagtttaattcaagnnnnnnnc-atattcaaggagaacccaaagctaatattatatatcaactagaacag 197  Q
    ||||||||||||||||||||||  ||||||||||| ||| ||||         ||| ||||||||| ||||||||||||||||||||||||| |||||||    
T  38239392 atttagagtccaaaaactagttttagaatagagttcaatacaagaaggaaaatatactcaaggagagcccaaagctaatattatatatcaaccagaacag 38239293  T
Q  198 aatgaagtgtcttctaaacctcactgcacagcttaagaactttctgaacaattttatagttgtaattagattcctgaa 275  Q
    |||||||||   ||||||| | ||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||    
T  38239292 aatgaagtg---tctaaactttactgcacagctcaagaactttctgaacaatattatagttgttattagattcctgaa 38239218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 38239495 - 38239442
Alignment:
Q  21 tgagcacttaaagcacttttcaattccaaaatttgtctgctttgctcttccacc 74  Q
    |||||||||||||||| |||||||||||| ||||||||| || |||||||||||    
T  38239495 tgagcacttaaagcacctttcaattccaacatttgtctgtttagctcttccacc 38239442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 520 - 590
Target Start/End: Complemental strand, 16844694 - 16844624
Alignment:
Q  520 aattcatcactataaatttcttatttgtttaacaacttgaaatatataataaactggtattaaaagatata 590  Q
    |||| |||||||||||||||||||||||| ||||||||  ||||||||  | | |||||||||||||||||    
T  16844694 aattgatcactataaatttcttatttgttcaacaacttacaatatatagcacattggtattaaaagatata 16844624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 596 - 666
Target Start/End: Complemental strand, 16844559 - 16844488
Alignment:
Q  596 taattacaaacagctgtaactacatatttgaaaata-caaacatcaaattaattcattcttctgcgatttgc 666  Q
    ||||||||||||| |||| ||||||||||||||| | |   |||| |||||||||||||||| |||||||||    
T  16844559 taattacaaacagttgtatctacatatttgaaaaaaaccctcatccaattaattcattcttcggcgatttgc 16844488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 478 - 510
Target Start/End: Complemental strand, 16844763 - 16844731
Alignment:
Q  478 tcaaaagttgaagcaattaagtcttgagcattt 510  Q
    ||||||||||||||||||||||||||| |||||    
T  16844763 tcaaaagttgaagcaattaagtcttgatcattt 16844731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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