View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7061_low_4 (Length: 695)

Name: NF7061_low_4
Description: NF7061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7061_low_4
NF7061_low_4
[»] chr6 (6 HSPs)
chr6 (19-355)||(33216902-33217241)
chr6 (427-676)||(33216581-33216830)
chr6 (77-138)||(3180989-3181050)
chr6 (89-134)||(32171560-32171605)
chr6 (278-333)||(31668790-31668845)
chr6 (288-333)||(3217305-3217350)
[»] chr1 (5 HSPs)
chr1 (86-132)||(5924108-5924154)
chr1 (86-133)||(27807209-27807256)
chr1 (77-138)||(15361802-15361861)
chr1 (88-139)||(44815234-44815285)
chr1 (88-144)||(31517671-31517727)
[»] chr8 (4 HSPs)
chr8 (79-138)||(2364382-2364441)
chr8 (82-138)||(37353097-37353153)
chr8 (86-133)||(14926911-14926958)
chr8 (283-333)||(12972766-12972816)
[»] chr2 (8 HSPs)
chr2 (93-144)||(34927046-34927097)
chr2 (87-138)||(43456637-43456688)
chr2 (273-327)||(2400072-2400126)
chr2 (90-144)||(17443541-17443595)
chr2 (86-144)||(32821892-32821950)
chr2 (265-319)||(35809857-35809911)
chr2 (86-134)||(15370252-15370300)
chr2 (90-134)||(19243626-19243670)
[»] chr5 (1 HSPs)
chr5 (86-120)||(34205348-34205382)
[»] chr4 (3 HSPs)
chr4 (88-138)||(21157857-21157907)
chr4 (88-138)||(28615613-28615663)
chr4 (89-133)||(30770983-30771027)
[»] chr3 (2 HSPs)
chr3 (82-144)||(20669701-20669763)
chr3 (87-136)||(21872225-21872274)
[»] chr7 (1 HSPs)
chr7 (86-134)||(48157049-48157097)


Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 355
Target Start/End: Complemental strand, 33217241 - 33216902
Alignment:
Q  19 aatatttagacaagtaaaacatgatataatattaataacaaaaaactactaagagcgcattttgatcgacttatttgaacttatttacagacataagcat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||          
T  33217241 aatatttagacaagtaaaacatgatataatattaataacaaaaaactactaagagcgcattttgatcgacttatttaaacttatttacagacat------ 33217148  T
Q  119 ttgtaagactgtttggaagaatttatnnnnnnnncaacttataaaagattcatatgatattttcatcttattgataaccgcctatggagcttatttacat 218  Q
    ||||||||||||||||||||||||||        |||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  33217147 ttgtaagactgtttggaagaatttataaaaaaaacaacttataacagattcatgtgatattttcatcttattgataaccgcttatggagcttatttacat 33217048  T
Q  219 atgctttccagaatagcttgtgaaaataac---------atataaaagcatatttattttcttttatctttggtattgaaataacttctacataaggact 309  Q
    |||||||||||||||||||||||| |||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33217047 atgctttccagaatagcttgtgaacataacgtgtaacttatataaaagcatatttattttcttttatctttggtattgaaataacttctacataaggact 33216948  T
Q  310 tatatgataattgcttatactatatccaaacaaagcctaaaagttt 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  33216947 tatatgataattgcttatactatatccaaacaaagcctaaaagttt 33216902  T

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Target: chr6; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 427 - 676
Target Start/End: Complemental strand, 33216830 - 33216581
Alignment:
Q  427 tactttgcagctgaaccagatatctgagacttcttcttctcattcaaaggatttgtttgatctttcgcaacagaaccttgttggttggaacttcttctca 526  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33216830 tactttgcagctgaaccagatatctgagacttcttcttctcgttcaaaggatttgtttgatctttcgcaacagaaccttgttggttggaactttttctca 33216731  T
Q  527 tatcaatggcatctgaaaaacctctttttgcacctgaaaataaactattaagcatgcataaagagtatgcannnnnnncttcaagaagatcattatctct 626  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  33216730 tatcaatggcatctgaaaaacctctttttgcacctgaaaataaactattaagcatgcataaagagtatgcatttttttcttcaagaagatcattatctct 33216631  T
Q  627 ctctggtgattcagaaccaggtaaaccaagtcttaactcagtagccttga 676  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33216630 ctctggtgattcagaaccaggtaaaccaagtcttaactcagtagccttga 33216581  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 3180989 - 3181050
Alignment:
Q  77 attttgatcgacttatttgaacttatttacagacataagcatttgtaagactgtttggaaga 138  Q
    |||||| | ||||||||||||||||| |||||||||||||| |||| ||||| |||| ||||    
T  3180989 attttggttgacttatttgaacttatctacagacataagcacttgtgagactatttgaaaga 3181050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 32171605 - 32171560
Alignment:
Q  89 ttatttgaacttatttacagacataagcatttgtaagactgtttgg 134  Q
    |||||||||||||||||| ||||||||||||||| |||||| ||||    
T  32171605 ttatttgaacttatttactgacataagcatttgtgagactggttgg 32171560  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 278 - 333
Target Start/End: Original strand, 31668790 - 31668845
Alignment:
Q  278 tttggtattgaaataacttctacataaggacttatatgataattgcttatactata 333  Q
    |||| ||| |||||| ||| |||||||| ||||||||||||||||||||| |||||    
T  31668790 tttgttatagaaatagcttatacataagcacttatatgataattgcttatgctata 31668845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 333
Target Start/End: Original strand, 3217305 - 3217350
Alignment:
Q  288 aaataacttctacataaggacttatatgataattgcttatactata 333  Q
    ||||| ||| |||||||| |||||||||||||| ||||||||||||    
T  3217305 aaatagcttatacataagcacttatatgataatcgcttatactata 3217350  T

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Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 132
Target Start/End: Complemental strand, 5924154 - 5924108
Alignment:
Q  86 gacttatttgaacttatttacagacataagcatttgtaagactgttt 132  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||    
T  5924154 gacttatttgaacttatttactgacatacgcatttgtaagactgttt 5924108  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 86 - 133
Target Start/End: Complemental strand, 27807256 - 27807209
Alignment:
Q  86 gacttatttgaacttatttacagacataagcatttgtaagactgtttg 133  Q
    ||||||||||||||| | ||| ||||||||||||||||||||||||||    
T  27807256 gacttatttgaacttttctactgacataagcatttgtaagactgtttg 27807209  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 15361861 - 15361802
Alignment:
Q  77 attttgatcgacttatttgaacttatttacagacataagcatttgtaagactgtttggaaga 138  Q
    |||| ||||||||||||||||||||||||| | |||||||||||||  |||||||| |||||    
T  15361861 atttggatcgacttatttgaacttatttactgtcataagcatttgt--gactgtttagaaga 15361802  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 139
Target Start/End: Original strand, 44815234 - 44815285
Alignment:
Q  88 cttatttgaacttatttacagacataagcatttgtaagactgtttggaagaa 139  Q
    ||||||||||||||| ||| ||||||||||||||| ||||| | ||||||||    
T  44815234 cttatttgaacttatctactgacataagcatttgtgagactttgtggaagaa 44815285  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 88 - 144
Target Start/End: Original strand, 31517671 - 31517727
Alignment:
Q  88 cttatttgaacttatttacagacataagcatttgtaagactgtttggaagaatttat 144  Q
    ||||||||| ||||||||| | |||||||| |||| ||||||||||| |||| ||||    
T  31517671 cttatttgagcttatttactggcataagcacttgtgagactgtttgggagaacttat 31517727  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 79 - 138
Target Start/End: Original strand, 2364382 - 2364441
Alignment:
Q  79 tttgatcgacttatttgaacttatttacagacataagcatttgtaagactgtttggaaga 138  Q
    |||||||||||||||||||||||| | | |||||||| | |||| |||||||||||||||    
T  2364382 tttgatcgacttatttgaacttatcttctgacataagtacttgtgagactgtttggaaga 2364441  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 37353097 - 37353153
Alignment:
Q  82 gatcgacttatttgaacttatttacagacataagcatttgtaagactgtttggaaga 138  Q
    ||||||||||| ||||| ||| ||| |||||||||| |||| |||||||||||||||    
T  37353097 gatcgacttatctgaacctatctactgacataagcacttgtgagactgtttggaaga 37353153  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 133
Target Start/End: Original strand, 14926911 - 14926958
Alignment:
Q  86 gacttatttgaacttatttacagacataagcatttgtaagactgtttg 133  Q
    ||||||||||||||||||||| | |||||||| |||| ||||||||||    
T  14926911 gacttatttgaacttatttactggcataagcacttgtgagactgtttg 14926958  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 283 - 333
Target Start/End: Complemental strand, 12972816 - 12972766
Alignment:
Q  283 tattgaaataacttctacataaggacttatatgataattgcttatactata 333  Q
    |||||||||| ||| |||||||| ||||||||||||| ||||||| |||||    
T  12972816 tattgaaatagcttatacataagcacttatatgataaatgcttatgctata 12972766  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 34927097 - 34927046
Alignment:
Q  93 ttgaacttatttacagacataagcatttgtaagactgtttggaagaatttat 144  Q
    |||| ||||||||| |||||||||| || |||||||||||||||||| ||||    
T  34927097 ttgagcttatttactgacataagcacttataagactgtttggaagaacttat 34927046  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 138
Target Start/End: Original strand, 43456637 - 43456688
Alignment:
Q  87 acttatttgaacttatttacagacataagcatttgtaagactgtttggaaga 138  Q
    ||||||||||||||||||||  |||||| || ||||||||||||||| ||||    
T  43456637 acttatttgaacttatttactcacataaacacttgtaagactgtttgaaaga 43456688  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 273 - 327
Target Start/End: Complemental strand, 2400126 - 2400072
Alignment:
Q  273 ttatctttggtattgaaataacttctacataaggacttatatgataattgcttat 327  Q
    ||||||||| ||| |||| ||||| |||||||| |||||||||||||||| ||||    
T  2400126 ttatctttgttatagaaacaacttatacataagcacttatatgataattgtttat 2400072  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 90 - 144
Target Start/End: Original strand, 17443541 - 17443595
Alignment:
Q  90 tatttgaacttatttacagacataagcatttgtaagactgtttggaagaatttat 144  Q
    ||||||||||||| ||| || ||||||| |||| ||||||||||||||| |||||    
T  17443541 tatttgaacttatatactgatataagcacttgtgagactgtttggaagagtttat 17443595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 32821950 - 32821892
Alignment:
Q  86 gacttatttgaacttatttacagacataagcatttgtaagactgtttggaagaatttat 144  Q
    ||||||||||| ||||| |||  || |||||||||| |||||||||||||||| |||||    
T  32821950 gacttatttgagcttatctaccaacgtaagcatttgcaagactgtttggaagagtttat 32821892  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 265 - 319
Target Start/End: Complemental strand, 35809911 - 35809857
Alignment:
Q  265 attttcttttatctttggtattgaaataacttctacataaggacttatatgataa 319  Q
    ||||| |||||||||||  || |||||||||| |||||||| |||||||||||||    
T  35809911 attttattttatctttgtcatggaaataacttatacataagcacttatatgataa 35809857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 15370252 - 15370300
Alignment:
Q  86 gacttatttgaacttatttacagacataagcatttgtaagactgtttgg 134  Q
    ||||||||||| ||||| ||| | ||||||||||||| |||||||||||    
T  15370252 gacttatttgagcttatctactggcataagcatttgtgagactgtttgg 15370300  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 19243670 - 19243626
Alignment:
Q  90 tatttgaacttatttacagacataagcatttgtaagactgtttgg 134  Q
    ||||||||||||| ||| ||||||||||||| | |||||||||||    
T  19243670 tatttgaacttatctactgacataagcatttctgagactgtttgg 19243626  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 86 - 120
Target Start/End: Complemental strand, 34205382 - 34205348
Alignment:
Q  86 gacttatttgaacttatttacagacataagcattt 120  Q
    ||||||||||||||||||||| |||||||||||||    
T  34205382 gacttatttgaacttatttactgacataagcattt 34205348  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 21157907 - 21157857
Alignment:
Q  88 cttatttgaacttatttacagacataagcatttgtaagactgtttggaaga 138  Q
    ||||||||| || || ||| |||||||||| ||||||||||||||||||||    
T  21157907 cttatttgagctcatctactgacataagcacttgtaagactgtttggaaga 21157857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 28615663 - 28615613
Alignment:
Q  88 cttatttgaacttatttacagacataagcatttgtaagactgtttggaaga 138  Q
    ||||||||| ||||| ||  ||||||||||||||||||||||||| |||||    
T  28615663 cttatttgagcttatctaatgacataagcatttgtaagactgtttcgaaga 28615613  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 30771027 - 30770983
Alignment:
Q  89 ttatttgaacttatttacagacataagcatttgtaagactgtttg 133  Q
    ||||||||| ||||  || ||||||||||||||||||||||||||    
T  30771027 ttatttgaatttatccactgacataagcatttgtaagactgtttg 30770983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 20669763 - 20669701
Alignment:
Q  82 gatcgacttatttgaacttatttacagacataagcatttgtaagactgtttggaagaatttat 144  Q
    ||||||||||| ||| ||||||||| ||||||| ||| | | |||||||||||||||| ||||    
T  20669763 gatcgacttatctgagcttatttactgacataaacatattttagactgtttggaagaacttat 20669701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 136
Target Start/End: Original strand, 21872225 - 21872274
Alignment:
Q  87 acttatttgaacttatttacagacataagcatttgtaagactgtttggaa 136  Q
    |||||||||| ||||| ||| |||||||||| |||| |||||||||||||    
T  21872225 acttatttgatcttatctactgacataagcacttgtgagactgtttggaa 21872274  T

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Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 48157049 - 48157097
Alignment:
Q  86 gacttatttgaacttatttacagacataagcatttgtaagactgtttgg 134  Q
    ||||||||||| ||||||||| ||  ||||||||||| |||||||||||    
T  48157049 gacttatttgagcttatttactgatttaagcatttgtgagactgtttgg 48157097  T

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