View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7061_low_5 (Length: 664)
Name: NF7061_low_5
Description: NF7061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7061_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 320
Target Start/End: Original strand, 31852640 - 31852941
Alignment:
| Q |
19 |
tgcaccaatacatgtatgtcacacatttaatcatgtcccttaagattgctagtgtcacatgtaataatagatcaaataatgttgttagaagttgtaacct |
118 |
Q |
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| T |
31852640 |
tgcaccaatacatgtatgtcacacatttaatcatgtcccttaagattgctagtgtcacatgtaataatagatcaaataatgttgttagaagttgtaacct |
31852739 |
T |
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| Q |
119 |
caagatttactggagcagaggcagaggaaggtggcatgtgcaatgctgccacaaaaagcttctcattctcatctctattaaccaagtacataggtgttcc |
218 |
Q |
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| T |
31852740 |
caagatttactggagcagaggcagaggaaggtggcatgtgcaatgctgcaacaaaaagcttctcattctcatctctattaaccaagtacataggtgttcc |
31852839 |
T |
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| Q |
219 |
tgcaggtaccctcataatgtcaccagcttcaaggttaaatctctcggttttatcttccatcaccaacccaattattcctctccctatagtaattcaacaa |
318 |
Q |
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| T |
31852840 |
tgcaggtaccctcataatgtcaccagcttcaaggttaaatctctcggttttatcttccatcaccaacccaattattcctctccctatagtaattcaacaa |
31852939 |
T |
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| Q |
319 |
gg |
320 |
Q |
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|| |
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| T |
31852940 |
gg |
31852941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 385 - 651
Target Start/End: Original strand, 31853006 - 31853272
Alignment:
| Q |
385 |
ttggttgttttttaatacatacccttgacgttgaagaaaataacctcagaatcaaagtggtgtggtgaaacaaaagcatgtcctttagcttctaaaatgg |
484 |
Q |
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| T |
31853006 |
ttggttgttttttaatacatacccttgacgttgaagaaaataacctcagaatcaaagtggtgtggtgaaacaaaagcatgtcctttagcttctaaaatgg |
31853105 |
T |
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| Q |
485 |
tcaaaccataattctcaaagtttctgagcagctttgatttttgatcaaacatgtttagagccataactctaccatcatctgtttctattttggtttcaaa |
584 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31853106 |
tcaaaccataattctcaaagtttctaagcagctttgatttttgatcaaacatgtttagagccataactctaccatcatctgtatctattttggtttcaaa |
31853205 |
T |
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| Q |
585 |
atctctgtcttcaaaaacataaggattttcatcctcttcatgttcatgttcacgttcatgttgatgt |
651 |
Q |
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| T |
31853206 |
atctctgtcttcaaaaacataaggattttcatcctcttcatgttcatgttcacgttcatgttgatgt |
31853272 |
T |
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