View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7061_low_9 (Length: 501)
Name: NF7061_low_9
Description: NF7061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7061_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 493
Target Start/End: Complemental strand, 38737704 - 38737203
Alignment:
| Q |
1 |
tcaaactgtaaataaaagaaggtatctatttgttaaattgaactgaaataagaatacaagtataataaagaagcaatacgtagtatcatttttcattggt |
100 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38737704 |
tcaaactgtaaataaaagacagtatctatttgttaaattgaactgaaataagaatacaagtataataaagaagcaatacgtagtatcatttttcattggt |
38737605 |
T |
|
| Q |
101 |
ccattacaagagagagagnnnnnnnn---------gaacttatacctcatcagtgttctcattcaagtttttgagataatcaaccaacctagacattcga |
191 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38737604 |
ccattacaagagagagagagaaaaaaaaaaaaaaagaacttatacctcatcagtgttctcattcaagtttttgagataatcaaccaacctagacattcga |
38737505 |
T |
|
| Q |
192 |
ccactacgggaactcttgccgttgctaccaccaccactgccatatcttgtgttactccgaaaaccaccccttccccaagtaagctttctagcttttgtca |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38737504 |
ccactacgggaactcttgccgttgctaccaccaccactgccatatcttgtgttactccgaaaaccaccccttccccaagtaagctttctagcttttgtca |
38737405 |
T |
|
| Q |
292 |
ccagcctagaagttcctcgattttctctatttatatccagatcactttctatacttccaccatcaggacttgccattgacgatgagggctgagaggagcg |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38737404 |
ccagcctagaagttcctcgattttctctatttatatccagatcactttctatgcttccaccatcaggacttgccattgacgatgagggctgagaggagcg |
38737305 |
T |
|
| Q |
392 |
aactctggtccatctctttcgttttctctgtcggagttctgtacccccctcatcaccggaagatgagtctctttcattatttccattttcctcatattct |
491 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38737304 |
aactctggtccatctctttcgttttctctgtcggagttctgtacccccctcatcaccggaagatgagtctctttcattatttccattttcctcattttct |
38737205 |
T |
|
| Q |
492 |
tc |
493 |
Q |
| |
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|| |
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| T |
38737204 |
tc |
38737203 |
T |
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