View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7062_high_4 (Length: 434)
Name: NF7062_high_4
Description: NF7062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7062_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 12 - 344
Target Start/End: Original strand, 50644430 - 50644758
Alignment:
| Q |
12 |
cactgacattttaaatactagtgatgaaataatgaattatttaggaggtgggtgaatagccgttttcaaatatatatcatcgaatcaagctatcctctac |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50644430 |
cactgacattttaaatactagtgatgaaataatgaattatttaggaggtgggtgaatagccgttttcaaatatatatcatcgaatcaagctatcctctac |
50644529 |
T |
|
| Q |
112 |
taaccattaatccatcgatgattgcatgcatacttcacctcaatgacatgatataagcatattaattgtacactttaacctcgcttctcttactttgcag |
211 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
50644530 |
tagccattaatccatcgatgattgcatgcatacttcacctcaatgacatgatataagcat----attgtacactttaacctcgcttctcttactttgcag |
50644625 |
T |
|
| Q |
212 |
atagtatgtatatttgttgagccaatgaaaatgcagtgcctagcggaaaacacgacgaaatggcggagaacacaaaagccaaagccattaaaatttgcca |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50644626 |
atagtatgtatatttgttgagccaatgaaaattcagtgcctagcggaaaacacgacggaatggcggagaacacaaaagccaaagccattaaaatttgcca |
50644725 |
T |
|
| Q |
312 |
actgtctcgtgaactcattcgctatccattcct |
344 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
50644726 |
actgtctcgtgaactcattcgctatgcattcct |
50644758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 340 - 423
Target Start/End: Original strand, 50644788 - 50644871
Alignment:
| Q |
340 |
ttcctgaaaatgctctttataacgaaagcatgcttttacgaaccttcacgacacccttaatagtttaactctttgtatatgatg |
423 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
50644788 |
ttcctaaaaatgctttttataacgaaagcatgctttcacgaaccttcacgacacccttaaaagtttaactccttgtatatgatg |
50644871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 334
Target Start/End: Original strand, 34467494 - 34467597
Alignment:
| Q |
231 |
agccaatgaaaatgcagtgcctagcggaaaacacgacgaaatggcggagaacacaaaagccaaagccattaaaatttgccaactgtctcgtgaactcatt |
330 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||| | | |||||||| ||||| || ||||| ||| ||||| |||||| |||||| ||||||| || |
|
|
| T |
34467494 |
agccaatgaaaatgtagtgcctaacggaaaacatgtcaggatggcggaaaacacggaatccaaaaccactaaaacatgccaagtgtctcatgaactcctt |
34467593 |
T |
|
| Q |
331 |
cgct |
334 |
Q |
| |
|
|||| |
|
|
| T |
34467594 |
cgct |
34467597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University