View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7062_low_1 (Length: 1149)
Name: NF7062_low_1
Description: NF7062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7062_low_1 |
 | |
|
| [»] scaffold0214 (1 HSPs) |
| | |
|
| [»] scaffold0836 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 598; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 18 - 635
Target Start/End: Complemental strand, 23135765 - 23135148
Alignment:
| Q |
18 |
catcacgggaggtccttggttaatatttgatcactgccttgcagtcacacactggtcacctgaatttgcatctccaaacgccaaagttgacaaaacaatt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
23135765 |
catcacgggaggtccttggttaatatttgatcactgccttgcagtcacacactggtcacctgaatttgcatctccaaacaccaaagttgacaaaacaatt |
23135666 |
T |
|
| Q |
118 |
gtttgggtgagattcccaggtctgaacttagtatactatgatgagagtttcttgctagccatggcttctgctcttggccgccccatcaaggtcgacacaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23135665 |
gtttgggtgagattcccaggtctgaacttagtatactatgatgagagtttcttgctagcaatggcttctgctcttggccgccccatcaaggtcgacacaa |
23135566 |
T |
|
| Q |
218 |
acaccctgaaaattgaaagaggtaagtttgccaaagtctgtgtggaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggta |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23135565 |
acaccctgaaaattgaaagaggtaagtttgccagagtctgtgtggaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggta |
23135466 |
T |
|
| Q |
318 |
caaagttcagtacgagggtctccacctaatttgcaccaactgcggatgctatggtcacttgggaagaaactgctcatcaacacgccacctccagccgtcc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23135465 |
caaagttcagtacgagggtctccacctaatttgcaccaactgcggatgctatggtcacttgggaagaaactgctcatcaacacgccacctccagccgtcc |
23135366 |
T |
|
| Q |
418 |
acctccagcgaaccaacacctccagccgtccatcaaccagccgttgtcagccaacaaactcggtcaacacccacctctgatgagcatttaattcaagacg |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
23135365 |
acctccagcgaaccaacacctccagccgtccatcaaccagccgttgtcagccaacaaactcggtcaacacccacctccgatgagcatttaattcaaaacg |
23135266 |
T |
|
| Q |
518 |
tccaaaaaggtaaagccgttactatttcgtctaaggattcattaccaaatgatgaccaattaaatgccattgatggagataatcatgtgctacatgggga |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23135265 |
tccaaaaaggtaaagccgttactatttcgtctaaggattcattaccaaatgatgaccaattaaatgccattgatggagataatcatgtgctacatgggga |
23135166 |
T |
|
| Q |
618 |
atggttacttgtcactag |
635 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
23135165 |
atggttacttgtcactag |
23135148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 696 - 1141
Target Start/End: Complemental strand, 23135087 - 23134642
Alignment:
| Q |
696 |
taacaggttcaatgcccttaatcatctaacaactagaaacaaaactggcctaccccttccaaataaccagtcacgccccattactgtccaaagatgcatc |
795 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
23135087 |
taacaggttcaatgcccttaatcatctaacaactagaaacaaaactggcctaccccttccaaataaccagtcacgccccattactgtccgaagatgcatc |
23134988 |
T |
|
| Q |
796 |
cttcaagtgcccaaagacacgaaacatcgcagacatgacaccatggccactgatgaaccagtctttgacttctcccaagtcaaccctttaatgttgtcgc |
895 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
23134987 |
cttcaagtgcccaaagacacgaaacgtcgcagacatgacaccatggccactgatgaaccagtctttgacttctcccaagtcaaccctttagtgttgtcgc |
23134888 |
T |
|
| Q |
896 |
ccccacacagccacaagaccacacctgaaccgcacgtgccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagttcaagaaaatga |
995 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23134887 |
ccccacacagccacaagaccacacctgaaccgcacgtgccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagttcaagaaaatga |
23134788 |
T |
|
| Q |
996 |
tcccaccttagtcaataatccaacacctgaacccgaccctaattcaagtttcatgctcgccacccccattccaaatgaccaagaagctaaccaccccaca |
1095 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23134787 |
tcccaccttagtcaataatccaacacctgaacccgaccctaattcaagtttcatgctcgccacccccattccaaatgaccaagaagctaaccaccccaca |
23134688 |
T |
|
| Q |
1096 |
aaagaccaaattggtgaaactagctatcataaggatgatgtccatc |
1141 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
23134687 |
aaagaccaaattggtgaaactagctatcataaggatgatgttcatc |
23134642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 332
Target Start/End: Original strand, 38345620 - 38345720
Alignment:
| Q |
232 |
gaaagaggtaagtttgccaaagtctgtgtggaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggtacaaagttcagtacg |
331 |
Q |
| |
|
|||||||| || ||||| | ||| ||||| ||||||||||| ||| |||||||| |||||||| ||||| |||||||||||||||||| |||| |||| |
|
|
| T |
38345620 |
gaaagaggaaaatttgcaagagtttgtgtcgaaattgatctcactgctccggtggttgggaaaatatgggttaacggacattggtacaaaattcaatacg |
38345719 |
T |
|
| Q |
332 |
a |
332 |
Q |
| |
|
| |
|
|
| T |
38345720 |
a |
38345720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 598; Significance: 0; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 18 - 635
Target Start/End: Original strand, 11894115 - 11894732
Alignment:
| Q |
18 |
catcacgggaggtccttggttaatatttgatcactgccttgcagtcacacactggtcacctgaatttgcatctccaaacgccaaagttgacaaaacaatt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11894115 |
catcacgggaggtccttggttaatatttgatcactgccttgcagtcacacactggtcacctgaatttgcatctccaaactccaaagttgacaaaacaatt |
11894214 |
T |
|
| Q |
118 |
gtttgggtgagattcccaggtctgaacttagtatactatgatgagagtttcttgctagccatggcttctgctcttggccgccccatcaaggtcgacacaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11894215 |
gtttgggtgagattcccaggtctgaacttagtatactatgatgagagtttcttgctagccatggcttctgctcttggccgccccatcaaggtcgacacaa |
11894314 |
T |
|
| Q |
218 |
acaccctgaaaattgaaagaggtaagtttgccaaagtctgtgtggaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggta |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11894315 |
acaccctgaaaattgaaagaggtaagtttgccagagtctgtgtggaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggta |
11894414 |
T |
|
| Q |
318 |
caaagttcagtacgagggtctccacctaatttgcaccaactgcggatgctatggtcacttgggaagaaactgctcatcaacacgccacctccagccgtcc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11894415 |
caaagttcagtacgagggtctccacctaatttgcaccaactgcggatgctatggtcacttgggaagaaactgctcatcaacacgccacctccagccgtcc |
11894514 |
T |
|
| Q |
418 |
acctccagcgaaccaacacctccagccgtccatcaaccagccgttgtcagccaacaaactcggtcaacacccacctctgatgagcatttaattcaagacg |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
11894515 |
acctccagcgaaccaacacctccagccgtccatcaaccagccattgtcagccaacaaactcggtcaacacccacctccgatgagcatttaattcaaaacg |
11894614 |
T |
|
| Q |
518 |
tccaaaaaggtaaagccgttactatttcgtctaaggattcattaccaaatgatgaccaattaaatgccattgatggagataatcatgtgctacatgggga |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11894615 |
tccaaaaaggtaaagccgttactatttcgtctaaggattcattaccaaatgatgaccaattaaatgccattgatggagataatcatgtgctacatgggga |
11894714 |
T |
|
| Q |
618 |
atggttacttgtcactag |
635 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
11894715 |
atggttacttgtcactag |
11894732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 696 - 1141
Target Start/End: Original strand, 11894793 - 11895238
Alignment:
| Q |
696 |
taacaggttcaatgcccttaatcatctaacaactagaaacaaaactggcctaccccttccaaataaccagtcacgccccattactgtccaaagatgcatc |
795 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11894793 |
taacaggttcaatgcccttaatcatctaacaactagaaacaaaactggcctaccccttccaaataaccagtcacgccccattactgtccgaagatgcatc |
11894892 |
T |
|
| Q |
796 |
cttcaagtgcccaaagacacgaaacatcgcagacatgacaccatggccactgatgaaccagtctttgacttctcccaagtcaaccctttaatgttgtcgc |
895 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11894893 |
cttcaagtgcccaaagacacgaaacgtcgcagacatgacaccatggccactgatgaaccagtctttgacttctcccaagtcaaccctttagtgttgtcgc |
11894992 |
T |
|
| Q |
896 |
ccccacacagccacaagaccacacctgaaccgcacgtgccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagttcaagaaaatga |
995 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11894993 |
ccccacacagccacaagaccacacctgaaccgcacgtgccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagttcaagaaaatga |
11895092 |
T |
|
| Q |
996 |
tcccaccttagtcaataatccaacacctgaacccgaccctaattcaagtttcatgctcgccacccccattccaaatgaccaagaagctaaccaccccaca |
1095 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11895093 |
tcccaccttagtcaataatccaacacctgaacccgacccgaattcaagtttcatgctcgccacccccattctaaatgaccaagaagctaaccaccccaca |
11895192 |
T |
|
| Q |
1096 |
aaagaccaaattggtgaaactagctatcataaggatgatgtccatc |
1141 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
11895193 |
aaagaccaaattggtgaaactagctatcataaggatgatgttcatc |
11895238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 6e-31
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 8310877 - 8310663
Alignment:
| Q |
18 |
catcacgggaggtccttggttaatatttgatcactgccttgcagtcacacactggtcacctgaatttgcatctccaaacgccaaagttgacaaaacaatt |
117 |
Q |
| |
|
|||||| ||||| |||| ||||||||| || || || ||||||||||||||||| || ||||||||||||||||| || || || ||||||||||| |
|
|
| T |
8310877 |
catcaccggaggcccttagttaatattcgaccattgtcttgcagtcacacactgaatgccagaatttgcatctccaaatgctaaggtggacaaaacaatc |
8310778 |
T |
|
| Q |
118 |
gtttgggtgagattcccaggtctgaacttagtatactatgatgagagtttcttgctagccatggcttctgctcttggccgccccatcaaggtcgacacaa |
217 |
Q |
| |
|
|||| |||||||| ||||| |||||| |||| |||||||| ||||| || | |||| |||||||||||||||||||||||||| ||| | || |||| |
|
|
| T |
8310777 |
gtttcagtgagatttccagggctgaacctagtttactatgacgagagctttctcttagctatggcttctgctcttggccgccccattaagattgatacaa |
8310678 |
T |
|
| Q |
218 |
acaccctgaaaattgaa |
234 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
8310677 |
aca--ctgaaaattgaa |
8310663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 121 - 390
Target Start/End: Original strand, 23421449 - 23421718
Alignment:
| Q |
121 |
tgggtgagattcccaggtctgaacttagtatactatgatgagagtttcttgctagccatggcttctgctcttggccgccccatcaaggtcgacacaaaca |
220 |
Q |
| |
|
||||| |||||||||||||||||| | |||||||||||||| || ||| | |||| ||||||||||| | || | || ||||| ||||||||||||| |
|
|
| T |
23421449 |
tgggtcagattcccaggtctgaaccttgtatactatgatgaaagcttccttttagcaatggcttctgcgatcggaagaccaatcaaagtcgacacaaaca |
23421548 |
T |
|
| Q |
221 |
ccctgaaaattgaaagaggtaagtttgccaaagtctgtgtggaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggtacaa |
320 |
Q |
| |
|
| |||||| |||||||||| || ||||| | ||| ||||| ||||||||||| || | || || ||||||||||||||||| || || |||||||| || |
|
|
| T |
23421549 |
cactgaaagttgaaagaggaaaatttgcaagagtgtgtgtcgaaattgatctcacggtcccagtcgtagggaaaatttgggttaatggtcattggtataa |
23421648 |
T |
|
| Q |
321 |
agttcagtacgagggtctccacctaatttgcaccaactgcggatgctatggtcacttgggaagaaactgc |
390 |
Q |
| |
|
|| || || || ||||| || | |||||||| ||||||||||| || || ||| | ||| |||||||| |
|
|
| T |
23421649 |
ggtacaatatgaaggtcttcatttgatttgcacaaactgcggatgttacggacacctcggacgaaactgc |
23421718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 178 - 386
Target Start/End: Complemental strand, 53611398 - 53611190
Alignment:
| Q |
178 |
atggcttctgctcttggccgccccatcaaggtcgacacaaacaccctgaaaattgaaagaggtaagtttgccaaagtctgtgtggaaattgatctaacta |
277 |
Q |
| |
|
|||||||| || |||| ||||| || ||||| ||||||||||| |||||| | |||||||| || ||||| | ||| ||||||||| | ||||| || |
|
|
| T |
53611398 |
atggcttcagcaattggtcgcccgataaaggtggacacaaacactctgaaagtcgaaagaggaaaatttgcgagagtttgtgtggaagtcgatcttacag |
53611299 |
T |
|
| Q |
278 |
tgccggtggtagggaaaatttgggtcaacggacattggtacaaagttcagtacgagggtctccacctaatttgcaccaactgcggatgctatggtcactt |
377 |
Q |
| |
|
|||||||| || ||||||||||| || || ||||||||||| ||||| || || || |||||| | |||||||| ||||| |||||||| |||||| | |
|
|
| T |
53611298 |
caccggtggtcggaaaaatttgggtgaatggtcattggtacaaggttcaatatgaaggcctccacttgatttgcacaaactgtggatgctacggtcacct |
53611199 |
T |
|
| Q |
378 |
gggaagaaa |
386 |
Q |
| |
|
||||||||| |
|
|
| T |
53611198 |
gggaagaaa |
53611190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 211 - 359
Target Start/End: Complemental strand, 15479680 - 15479532
Alignment:
| Q |
211 |
gacacaaacaccctgaaaattgaaagaggtaagtttgccaaagtctgtgtggaaattgatctaactatgccggtggtagggaaaatttgggtcaacggac |
310 |
Q |
| |
|
||||| |||||| ||||| |||||||||| || |||| | |||||| || ||||||||||| || | || || ||| |||| |||||||| || |||| |
|
|
| T |
15479680 |
gacactaacaccttgaaagttgaaagaggaaaacttgcaagagtctgcgtcgaaattgatctcacacttccagttgtaaggaagatttgggtgaatggac |
15479581 |
T |
|
| Q |
311 |
attggtacaaagttcagtacgagggtctccacctaatttgcaccaactg |
359 |
Q |
| |
|
||||||||||| ||||||||||||| ||||| ||||| ||||||||||| |
|
|
| T |
15479580 |
attggtacaaaattcagtacgagggcctccatctaatatgcaccaactg |
15479532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 265 - 355
Target Start/End: Complemental strand, 8278460 - 8278370
Alignment:
| Q |
265 |
attgatctaactatgccggtggtagggaaaatttgggtcaacggacattggtacaaagttcagtacgagggtctccacctaatttgcacca |
355 |
Q |
| |
|
|||||| | ||||||| ||| |||| || |||||||| |||||| ||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
8278460 |
attgatatgactatgcaggtcataggaaagatttgggtaaacggatattggtacaaagtccagtacgagggtctgcacctaatttgcacca |
8278370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 265 - 355
Target Start/End: Complemental strand, 8307269 - 8307179
Alignment:
| Q |
265 |
attgatctaactatgccggtggtagggaaaatttgggtcaacggacattggtacaaagttcagtacgagggtctccacctaatttgcacca |
355 |
Q |
| |
|
|||||| | ||||||| ||| |||| || |||||||| |||||| ||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
8307269 |
attgatatgactatgcaggtcataggaaagatttgggtaaacggatattggtacaaagtccagtacgagggtctgcacctaatttgcacca |
8307179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 193 - 362
Target Start/End: Complemental strand, 38650210 - 38650041
Alignment:
| Q |
193 |
ggccgccccatcaaggtcgacacaaacaccctgaaaattgaaagaggtaagtttgccaaagtctgtgtggaaattgatctaactatgccggtggtaggga |
292 |
Q |
| |
|
|||||||| ||||| |||||||||||||| |||||| |||||||||| || ||||| | || ||||| || ||||||| |||||||| |||||||| | |
|
|
| T |
38650210 |
ggccgcccaatcaaagtcgacacaaacactctgaaagttgaaagaggaaaatttgcaagggtatgtgtcgaggttgatcttactatgccagtggtaggaa |
38650111 |
T |
|
| Q |
293 |
aaatttgggtcaacggacattggtacaaagttcagtacgagggtctccacctaatttgcaccaactgcgg |
362 |
Q |
| |
|
|||| ||||| || || || |||||||| || ||||| || ||| | ||| | ||||| ||||| ||||| |
|
|
| T |
38650110 |
aaatatgggttaatggccactggtacaaggtccagtatgaaggtttacacttgatttgtaccaattgcgg |
38650041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 317
Target Start/End: Complemental strand, 3662800 - 3662544
Alignment:
| Q |
61 |
gtcacacactggtcacctgaatttgcatctccaaacgccaaagttgacaaaacaattgtttgggtgagattcccaggtctgaacttagtatactatgatg |
160 |
Q |
| |
|
||||| ||||||||||| ||||||||||| ||| | ||||||||||| ||| |||||||||| | || || || || || ||||| || ||||||| |
|
|
| T |
3662800 |
gtcacccactggtcaccagaatttgcatcaccagaagccaaagttgaacggacagttgtttgggtacgttttcctggcctaaatttagtctattatgatg |
3662701 |
T |
|
| Q |
161 |
agagtttcttgctagccatggcttctgctcttggccgccccatcaaggtcgacacaaacaccctgaaaattgaaagaggtaagtttgccaaagtctgtgt |
260 |
Q |
| |
|
| || ||||| || || ||||| |||||| |||||||||| || ||||| ||||| || || || ||| |||||||||| || || ||| || ||||| |
|
|
| T |
3662700 |
aaagcttcttactggcaatggcctctgctattggccgcccgataaaggtagacactaatacactaaaagttgaaagaggaaaattcgcccgtgtatgtgt |
3662601 |
T |
|
| Q |
261 |
ggaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggta |
317 |
Q |
| |
|
||| | ||||| || |||| || || || ||||||||| | |||||||||||||| |
|
|
| T |
3662600 |
agaagtggatcttacagtgccagtagtgggaaaaatttggattaacggacattggta |
3662544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 342
Target Start/End: Complemental strand, 11892741 - 11892550
Alignment:
| Q |
151 |
tactatgatgagagtttcttgctagccatggcttctgctcttggccgccccatcaaggtcgacacaaacaccctgaaaattgaaagaggtaagtttgcca |
250 |
Q |
| |
|
||||||||||||| ||| | ||||| ||||| || ||| ||||||| ||||| || || || | ||||| || ||| | ||||||||||| ||||| | |
|
|
| T |
11892741 |
tactatgatgagatttttcttctagctatggcctcagctattggccggcccataaaagtggatatcaacactctcaaagtcgaaagaggtaaatttgcaa |
11892642 |
T |
|
| Q |
251 |
aagtctgtgtggaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggtacaaagttcagtacgagggtctccac |
342 |
Q |
| |
|
|||||| || ||| |||| || || | ||||||||||| ||||| ||||| ||||| ||||||||||| || ||||| || || |||||| |
|
|
| T |
11892641 |
gagtctgcgtagaagttgacctcacggttccggtggtaggaaaaatatgggttaacggtcattggtacaaggtgcagtatgaaggcctccac |
11892550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 104
Target Start/End: Complemental strand, 15479869 - 15479787
Alignment:
| Q |
22 |
acgggaggtccttggttaatatttgatcactgccttgcagtcacacactggtcacctgaatttgcatctccaaacgccaaagt |
104 |
Q |
| |
|
|||||||||||||||||||| | || || || |||||||||||||| ||||| | || ||||| |||||||| |||||||| |
|
|
| T |
15479869 |
acgggaggtccttggttaatttacgaccattgtcttgcagtcacacattggtccctcgagtttgcctctccaaatgccaaagt |
15479787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 574; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 18 - 635
Target Start/End: Original strand, 20281816 - 20282433
Alignment:
| Q |
18 |
catcacgggaggtccttggttaatatttgatcactgccttgcagtcacacactggtcacctgaatttgcatctccaaacgccaaagttgacaaaacaatt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
20281816 |
catcacgggaggtccttggttaatatttgatcactgccttgcagtcacacactggtcacctgaatttgcatctccaaacaccaaagttgacaaaacaatt |
20281915 |
T |
|
| Q |
118 |
gtttgggtgagattcccaggtctgaacttagtatactatgatgagagtttcttgctagccatggcttctgctcttggccgccccatcaaggtcgacacaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20281916 |
gtttgggtgagattcccaggtctgaacttagtatactatgatgagagtttcttgctagccatggcttctgctcttggccgccccatcaaggtcgacacaa |
20282015 |
T |
|
| Q |
218 |
acaccctgaaaattgaaagaggtaagtttgccaaagtctgtgtggaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggta |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20282016 |
acaccctgaaaattgaaagaggtaagtttgccagagtctgtgtggaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggta |
20282115 |
T |
|
| Q |
318 |
caaagttcagtacgagggtctccacctaatttgcaccaactgcggatgctatggtcacttgggaagaaactgctcatcaacacgccacctccagccgtcc |
417 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20282116 |
caaagttcagtacgagagtctccacctaatttgcaccaactgcggatgctatggtcacttgggaagaaactgctcatcaacacgccacctccagccgtcc |
20282215 |
T |
|
| Q |
418 |
acctccagcgaaccaacacctccagccgtccatcaaccagccgttgtcagccaacaaactcggtcaacacccacctctgatgagcatttaattcaagacg |
517 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
20282216 |
acctccagcgaaccaacaccttcagccgtccatcaaccagccgttgttagccaacaaactcggtcaacacccacctccgatgagcatttaattcaaaacg |
20282315 |
T |
|
| Q |
518 |
tccaaaaaggtaaagccgttactatttcgtctaaggattcattaccaaatgatgaccaattaaatgccattgatggagataatcatgtgctacatgggga |
617 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
20282316 |
tccaaaaaggtacaaccgttactatttcgtctaaggattcattaccaaatgatgaccaattaaatgccattgacggagataatcatgtgctacatgggga |
20282415 |
T |
|
| Q |
618 |
atggttacttgtcactag |
635 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
20282416 |
atggtcacttgtcactag |
20282433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 696 - 1141
Target Start/End: Original strand, 20282494 - 20282939
Alignment:
| Q |
696 |
taacaggttcaatgcccttaatcatctaacaactagaaacaaaactggcctaccccttccaaataaccagtcacgccccattactgtccaaagatgcatc |
795 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
20282494 |
taacaggttcaatgcccttaatcatctaacaactagaaacaaaactggcctaccccttccaaataaccagtcacgccccattattgtccagagatgcatc |
20282593 |
T |
|
| Q |
796 |
cttcaagtgcccaaagacacgaaacatcgcagacatgacaccatggccactgatgaaccagtctttgacttctcccaagtcaaccctttaatgttgtcgc |
895 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
20282594 |
cttcaagtgcccaaagacacgaaacatcgtagacatgacaccatggccactgatgaaccagtctttgacttctcccaagtcaaccctttagtgttgtcgc |
20282693 |
T |
|
| Q |
896 |
ccccacacagccacaagaccacacctgaaccgcacgtgccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagttcaagaaaatga |
995 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20282694 |
ccccacacagccacaagaccacacctgaaccgcacgtgccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagttcaagaaaatga |
20282793 |
T |
|
| Q |
996 |
tcccaccttagtcaataatccaacacctgaacccgaccctaattcaagtttcatgctcgccacccccattccaaatgaccaagaagctaaccaccccaca |
1095 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20282794 |
tcccaccttagtcaataatccaacacctgaacccgaccctaattcaagtttcatgctcgccacccccattccaaatgaccaagaagctaaccaccccaca |
20282893 |
T |
|
| Q |
1096 |
aaagaccaaattggtgaaactagctatcataaggatgatgtccatc |
1141 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
20282894 |
aaagaccaaattggtgaaactagctatcataaggatgatgttcatc |
20282939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 390
Target Start/End: Complemental strand, 5196080 - 5195883
Alignment:
| Q |
193 |
ggccgccccatcaaggtcgacacaaacaccctgaaaattgaaagaggtaagtttgccaaagtctgtgtggaaattgatctaactatgccggtggtaggga |
292 |
Q |
| |
|
|||||||| || || || ||| |||| || |||||| |||||||||| || || || | | ||||||| ||||||||||| ||| | || || ||||| | |
|
|
| T |
5196080 |
ggccgccctataaaagtagacccaaatactctgaaagttgaaagaggaaaattcgcaagaatctgtgtcgaaattgatcttactgttccagtagtaggaa |
5195981 |
T |
|
| Q |
293 |
aaatttgggtcaacggacattggtacaaagttcagtacgagggtctccacctaatttgcaccaactgcggatgctatggtca-cttgggaagaaactgc |
390 |
Q |
| |
|
||| |||||| || || ||||| ||||| || || || || ||||| || ||||||||||| || ||||| || || ||||| |||||| ||||||||| |
|
|
| T |
5195980 |
aaaattgggttaatggccattgatacaaggtacaatatgaaggtctgcatctaatttgcacaaattgcggttgttacggtcatcttggg-agaaactgc |
5195883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 635
Target Start/End: Complemental strand, 14656857 - 14656255
Alignment:
| Q |
18 |
catcacgggaggtccttggttaatatttgatcactgccttgcagtcacacactggtcacctgaatttgcatctccaaacgccaaagttgacaaaacaatt |
117 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||| ||||||| |||||||| ||||||||||||||||| || || ||||| |||||||||||| |
|
|
| T |
14656857 |
catcacgggaggcccttggttaatctttgatcactgcctcacagtcacccactggtcgcctgaatttgcatctccgaatgctaaagtggacaaaacaatt |
14656758 |
T |
|
| Q |
118 |
gtttgggtgagattcccaggtctgaacttagtatactatgatgagagtttcttgctagccatggcttctgctcttggccgccccatcaaggtcgacacaa |
217 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
14656757 |
gtttgggttagattcccaggtctgaacttagtgtactatgatgagagtttcttgttagctatggcttctgctcttggccgccccatcaaagttgacacaa |
14656658 |
T |
|
| Q |
218 |
acaccctgaaaattgaaagaggtaagtttgccaaagtctgtgtggaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggta |
317 |
Q |
| |
|
||||||||||||||||||||||||| || |||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14656657 |
acaccctgaaaattgaaagaggtaaattcgccagagtctgtgtggaaattgatctgactgtgccggtggtagggaaaatttgggtcaacggactttggta |
14656558 |
T |
|
| Q |
318 |
caaagttcagtacgagggtctccacctaatttgcaccaactgcggatgctatggtcacttgggaagaaactgctcatc-aacacgccacctccagccgtc |
416 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | || || ||| | | |
|
|
| T |
14656557 |
caaagttcagtatgagggtctccacctaatttgcaccaactgcggatgctatggtcacttgggaaggaactgctcaacaaattcggcacaac-------c |
14656465 |
T |
|
| Q |
417 |
cacctccagcgaaccaacacctccagccgtccatcaaccagccgttgtcagccaacaaactcggtcaacacccacctctgatgagcatttaattcaagac |
516 |
Q |
| |
|
|||| || |||||||||||| ||| |||||||||| | |||||| ||||| ||| ||||| ||||||| ||||||||||||||||| || |
|
|
| T |
14656464 |
cacccccggcgaaccaacac---------gccaccaaccagccgccgacagccagcaaacacggccaacagccacctccgatgagcatttaattcataac |
14656374 |
T |
|
| Q |
517 |
gtccaaaaaggtaaagccgttactatttcgtctaaggattcattaccaaatgatgaccaattaaatgccattgatggagataatcatgtgctacatgggg |
616 |
Q |
| |
|
| |||||||||||||| ||||||| || |||| || |||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
14656373 |
gcacaaaaaggtaaagcagttactacttttcctaaagaatcattacctaatgatgaccaattaattggcattgatggagataatcatgtgctacatgggg |
14656274 |
T |
|
| Q |
617 |
aatggttacttgtcactag |
635 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
14656273 |
aatggttacttgtcactag |
14656255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 4e-78
Query Start/End: Original strand, 18 - 390
Target Start/End: Original strand, 1026946 - 1027318
Alignment:
| Q |
18 |
catcacgggaggtccttggttaatatttgatcactgccttgcagtcacacactggtcacctgaatttgcatctccaaacgccaaagttgacaaaacaatt |
117 |
Q |
| |
|
|||||| ||||| |||||||||||||| || || || || ||||||||||||||| | || |||||||||||||||| || || || ||||||||||| |
|
|
| T |
1026946 |
catcaccggaggcccttggttaatattcgaccattgtctcgcagtcacacactggacgccataatttgcatctccaaatgctaaggtggacaaaacaatc |
1027045 |
T |
|
| Q |
118 |
gtttgggtgagattcccaggtctgaacttagtatactatgatgagagtttcttgctagccatggcttctgctcttggccgccccatcaaggtcgacacaa |
217 |
Q |
| |
|
||||||||||||| ||||| ||||| |||| |||||||||||||| || | |||| ||||||||||||||||| |||||||| ||||| || | || |
|
|
| T |
1027046 |
gtttgggtgagatatccagggttgaacctagtttactatgatgagagctttctcttagctatggcttctgctcttggtcgccccattaaggttgatagaa |
1027145 |
T |
|
| Q |
218 |
acaccctgaaaattgaaagaggtaagtttgccaaagtctgtgtggaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggta |
317 |
Q |
| |
|
|||| |||||||||||| ||||||| || || | ||| ||||| || |||||||| ||||||||||| ||||| || |||||||| |||||||||||||| |
|
|
| T |
1027146 |
acacactgaaaattgaacgaggtaaattcgcaagagtttgtgttgagattgatctgactatgccggtcgtaggaaagatttgggtaaacggacattggta |
1027245 |
T |
|
| Q |
318 |
caaagttcagtacgagggtctccacctaatttgcaccaactgcggatgctatggtcacttgggaagaaactgc |
390 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||||| || || || ||||||||| | |||||| |
|
|
| T |
1027246 |
caaagtccagtacgagggtctccacctaatttgcaccagttgcggttgttacgggcacttgggacggaactgc |
1027318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 117; E-Value: 5e-59
Query Start/End: Original strand, 25 - 353
Target Start/End: Complemental strand, 35138424 - 35138096
Alignment:
| Q |
25 |
ggaggtccttggttaatatttgatcactgccttgcagtcacacactggtcacctgaatttgcatctccaaacgccaaagttgacaaaacaattgtttggg |
124 |
Q |
| |
|
||||| || |||||||| ||||||||||| || ||||| |||||||| | ||||||||||| |||||||| ||||| || |||||||||||||| |||| |
|
|
| T |
35138424 |
ggaggcccgtggttaatctttgatcactgtctcgcagtagcacactggactcctgaatttgcttctccaaatgccaaggtagacaaaacaattgtctggg |
35138325 |
T |
|
| Q |
125 |
tgagattcccaggtctgaacttagtatactatgatgagagtttcttgctagccatggcttctgctcttggccgccccatcaaggtcgacacaaacaccct |
224 |
Q |
| |
|
| ||||| |||||| | || | || || ||||||||||| ||| | |||||||||| ||||||||||||||||| || || || ||||||||||| || |
|
|
| T |
35138324 |
taagatttccaggtttaaatcttgtgtattatgatgagagcttcctattagccatggcatctgctcttggccgccctattaaagtagacacaaacactct |
35138225 |
T |
|
| Q |
225 |
gaaaattgaaagaggtaagtttgccaaagtctgtgtggaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggtacaaagtt |
324 |
Q |
| |
|
|||||| ||| | ||||| ||||| | ||| ||||| ||||||||||| ||| ||||||| || || ||||||||||| |||||||| ||||||||||| |
|
|
| T |
35138224 |
gaaaatcgaacgtggtaaatttgcaagagtttgtgttgaaattgatctcactttgccggttgtcggtaaaatttgggttaacggacactggtacaaagtc |
35138125 |
T |
|
| Q |
325 |
cagtacgagggtctccacctaatttgcac |
353 |
Q |
| |
|
||||||||||| || || || |||||||| |
|
|
| T |
35138124 |
cagtacgagggactacatcttatttgcac |
35138096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 771 - 1025
Target Start/End: Complemental strand, 14656113 - 14655859
Alignment:
| Q |
771 |
ccccattactgtccaaagatgcatccttcaagtgcccaaagacacgaaacatcgcagacatgacaccatggccactgatgaaccagtctttgacttctcc |
870 |
Q |
| |
|
||||| ||||| ||||| | ||| || |||||| || |||||||| |||| |||||| |||||| ||| |||||||||| || | |||||||||||| |
|
|
| T |
14656113 |
ccccactactgaccaaacacgcacccatcaagttcctaaagacacaaaacgtcgcaggcatgacgacatcaccactgatgagccgatttttgacttctcc |
14656014 |
T |
|
| Q |
871 |
caagtcaaccctttaatgttgtcgcccccacacagccacaagaccacacctgaaccgcacgtgccaaaaacaacccaacagttaccaactaaacaaacta |
970 |
Q |
| |
|
|| |||||||||||||||||||||||||||| || || |||| |||| ||||||||||||||||| |||||||| ||||| ||||||| ||||||||||| |
|
|
| T |
14656013 |
catgtcaaccctttaatgttgtcgcccccactcaaccgcaaggccactcctgaaccgcacgtgcctaaaacaactcaacaattaccaaataaacaaacta |
14655914 |
T |
|
| Q |
971 |
ccacaaatgaagttcaagaaaatgatcccaccttagtcaataatccaacacctga |
1025 |
Q |
| |
|
|||| ||||||| |||| |||||| ||||| | ||||||||| ||||||||| |
|
|
| T |
14655913 |
ccactaatgaagctcaaaaaaatgttcccattgttatcaataatcaaacacctga |
14655859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 22 - 374
Target Start/End: Complemental strand, 42406423 - 42406071
Alignment:
| Q |
22 |
acgggaggtccttggttaatatttgatcactgccttgcagtcacacactggtcacctgaatttgcatctccaaacgccaaagttgacaaaacaattgttt |
121 |
Q |
| |
|
|||||||||||||||||||| | || || || |||||||||||||| ||||| || || || || |||||||| |||||||| || | |||| | |||| |
|
|
| T |
42406423 |
acgggaggtccttggttaatttacgaccattgtcttgcagtcacacattggtcccccgagttcgcctctccaaatgccaaagtggaaagaacagtcgttt |
42406324 |
T |
|
| Q |
122 |
gggtgagattcccaggtctgaacttagtatactatgatgagagtttcttgctagccatggcttctgctcttggccgccccatcaaggtcgacacaaacac |
221 |
Q |
| |
|
|||| | || |||||||| || |||| || || || || ||||| | ||||| ||||| || || ||||||| || ||||| || ||||| ||||| |
|
|
| T |
42406323 |
gggtccgttttccaggtctaaatctagtctattacgacgaaagttttctcctagctatggcctcagcaattggccgaccaatcaaagttgacacgaacac |
42406224 |
T |
|
| Q |
222 |
cctgaaaattgaaagaggtaagtttgccaaagtctgtgtggaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggtacaaa |
321 |
Q |
| |
|
||||||| ||||| |||| || ||||| | ||||||||| || ||||| || ||| |||| || || ||||| |||||||| || ||||| ||||||||| |
|
|
| T |
42406223 |
cctgaaagttgaacgaggaaaatttgcaagagtctgtgttgagattgacctcactctgccagtagtggggaagatttgggtaaatggacactggtacaaa |
42406124 |
T |
|
| Q |
322 |
gttcagtacgagggtctccacctaatttgcaccaactgcggatgctatggtca |
374 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||| || ||||| ||||| |
|
|
| T |
42406123 |
attcagtacgagggtctgcacctaatatgcaccaactgtggctgctacggtca |
42406071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 151 - 332
Target Start/End: Original strand, 174312 - 174493
Alignment:
| Q |
151 |
tactatgatgagagtttcttgctagccatggcttctgctcttggccgccccatcaaggtcgacacaaacaccctgaaaattgaaagaggtaagtttgcca |
250 |
Q |
| |
|
||||||||||| || || ||||| || |||||||| ||||| || | || |||||||| ||||| || ||||||||| ||||||| || || || || | |
|
|
| T |
174312 |
tactatgatgaaagctttttgctcgcaatggcttcggctctaggtaggcctatcaaggttgacaccaataccctgaaagttgaaaggggaaaattcgcga |
174411 |
T |
|
| Q |
251 |
aagtctgtgtggaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggtacaaagttcagtacga |
332 |
Q |
| |
|
||||||||| ||||||||||| ||| | |||||||| |||||||| ||||| ||||| || |||||||| ||||||||||| |
|
|
| T |
174412 |
gagtctgtgttgaaattgatctcactgtcccggtggtggggaaaatatgggtgaacggtcactggtacaaggttcagtacga |
174493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 61 - 239
Target Start/End: Original strand, 39009492 - 39009670
Alignment:
| Q |
61 |
gtcacacactggtcacctgaatttgcatctccaaacgccaaagttgacaaaacaattgtttgggtgagattcccaggtctgaacttagtatactatgatg |
160 |
Q |
| |
|
||||| ||||||||||| ||||||||||| ||| | ||||||||||| ||| |||||||||| | || || || || || ||||| || ||||||| |
|
|
| T |
39009492 |
gtcacccactggtcaccagaatttgcatcaccagaagccaaagttgaacggacagttgtttgggtacgttttcctgggctaaatttagtctattatgatg |
39009591 |
T |
|
| Q |
161 |
agagtttcttgctagccatggcttctgctcttggccgccccatcaaggtcgacacaaacaccctgaaaattgaaagagg |
239 |
Q |
| |
|
| || ||||| ||||| ||||| |||||| |||||||||| || ||||| ||||| || || || ||| |||||||||| |
|
|
| T |
39009592 |
aaagcttcttactagcaatggcctctgctattggccgcccgataaaggtagacactaatacactaaaagttgaaagagg |
39009670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 4e-50; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 73 - 374
Target Start/End: Original strand, 7810807 - 7811108
Alignment:
| Q |
73 |
tcacctgaatttgcatctccaaacgccaaagttgacaaaacaattgtttgggtgagattcccaggtctgaacttagtatactatgatgagagtttcttgc |
172 |
Q |
| |
|
||||| || |||||||||||| | |||||||| || ||||| |||||||||||||| | ||| |||| |||| ||||| || ||||| ||| ||| |
|
|
| T |
7810807 |
tcaccggagtttgcatctccagatgccaaagtggatcgcacaatagtttgggtgagatttctagggttgaatctagtctactacgacgagagcttcctgc |
7810906 |
T |
|
| Q |
173 |
tagccatggcttctgctcttggccgccccatcaaggtcgacacaaacaccctgaaaattgaaagaggtaagtttgccaaagtctgtgtggaaattgatct |
272 |
Q |
| |
|
| || |||||||| || ||||||||||| || || || ||||| ||||| ||||||||||||||||| || || || | ||||||||| ||||||||||| |
|
|
| T |
7810907 |
ttgctatggcttcagcacttggccgcccaataaaagtggacactaacacactgaaaattgaaagaggaaaattcgcaagagtctgtgttgaaattgatct |
7811006 |
T |
|
| Q |
273 |
aactatgccggtggtagggaaaatttgggtcaacggacattggtacaaagttcagtacgagggtctccacctaatttgcaccaactgcggatgctatggt |
372 |
Q |
| |
|
||||||||||| ||||| ||||||||||| ||||| |||||||||||||| ||||| |||||||| |||||||||||||| | ||| ||||| || ||| |
|
|
| T |
7811007 |
tactatgccggtagtaggaaaaatttgggttaacggccattggtacaaagtccagtatgagggtcttcacctaatttgcacaagctgtggatgttacggt |
7811106 |
T |
|
| Q |
373 |
ca |
374 |
Q |
| |
|
|| |
|
|
| T |
7811107 |
ca |
7811108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 386
Target Start/End: Original strand, 23942077 - 23942333
Alignment:
| Q |
130 |
ttcccaggtctgaacttagtatactatgatgagagtttcttgctagccatggcttctgctcttggccgccccatcaaggtcgacacaaacaccctgaaaa |
229 |
Q |
| |
|
||||| ||| ||||| |||| || ||||| ||||| || | ||||| |||||||| ||| |||| | || || || || |||||||||||| ||||| |
|
|
| T |
23942077 |
ttccctggtttgaacctagtttattatgacgagagctttctcctagctatggcttcagctattggtagaccaataaaagtggacacaaacaccttgaaag |
23942176 |
T |
|
| Q |
230 |
ttgaaagaggtaagtttgccaaagtctgtgtggaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggtacaaagttcagta |
329 |
Q |
| |
|
| |||||||| || |||| | |||||| || ||| | ||||| || |||||||| || ||||||||||| || || ||||||||||| || ||||| |
|
|
| T |
23942177 |
tcgaaagaggaaaatttgtgagagtctgcgtagaagtcgatcttacagcaccggtggtcggaaaaatttgggttaatggtcattggtacaaggtccagta |
23942276 |
T |
|
| Q |
330 |
cgagggtctccacctaatttgcaccaactgcggatgctatggtcacttgggaagaaa |
386 |
Q |
| |
|
|| |||||||| | |||||||| | | ||||| ||||||||| |||||||||| |
|
|
| T |
23942277 |
tgaaggtctccatttgatttgcacaagttatggatgttatggtcacctgggaagaaa |
23942333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 362
Target Start/End: Original strand, 29910844 - 29910914
Alignment:
| Q |
292 |
aaaatttgggtcaacggacattggtacaaagttcagtacgagggtctccacctaatttgcaccaactgcgg |
362 |
Q |
| |
|
|||||||||||||| || |||||||| ||||||||||| || ||||| || || |||||||| || ||||| |
|
|
| T |
29910844 |
aaaatttgggtcaatggtcattggtataaagttcagtatgaaggtcttcatcttatttgcacaaattgcgg |
29910914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214 (Bit Score: 66; Significance: 1e-28; HSPs: 1)
Name: scaffold0214
Description:
Target: scaffold0214; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 65 - 362
Target Start/End: Original strand, 5942 - 6239
Alignment:
| Q |
65 |
cacactggtcacctgaatttgcatctccaaacgccaaagttgacaaaacaattgtttgggtgagattcccaggtctgaacttagtatactatgatgagag |
164 |
Q |
| |
|
|||| |||||||| ||||||||||| || ||||| |||||||| | ||| |||||||||| | || ||||| | |||||||| || |||||||| || |
|
|
| T |
5942 |
cacattggtcaccggaatttgcatcacccaacgcaaaagttgaaagaacggttgtttgggtacgttttccaggcttaaacttagtttattatgatgaaag |
6041 |
T |
|
| Q |
165 |
tttcttgctagccatggcttctgctcttggccgccccatcaaggtcgacacaaacaccctgaaaattgaaagaggtaagtttgccaaagtctgtgtggaa |
264 |
Q |
| |
|
|||| | | || ||||||||||| | ||||| || || ||||| ||||||||||| |||||| ||||||| ||||||||||| ||| ||||| || |
|
|
| T |
6042 |
tttccttttggcaatggcttctgccataggccgtcctattaaggttgacacaaacacgctgaaagttgaaaggggtaagtttgctcgagtttgtgtcgag |
6141 |
T |
|
| Q |
265 |
attgatctaactatgccggtggtagggaaaatttgggtcaacggacattggtacaaagttcagtacgagggtctccacctaatttgcaccaactgcgg |
362 |
Q |
| |
|
||||||| || ||||||||| | || ||||| ||||| || || |||||||| |||||||| || ||||| |||||||| || ||||| || ||||| |
|
|
| T |
6142 |
gttgatctcacaatgccggtgattggaaaaatctgggtaaatggtcattggtataaagttcaatatgagggcctccaccttatatgcactaattgcgg |
6239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 3e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 252 - 374
Target Start/End: Complemental strand, 7590678 - 7590556
Alignment:
| Q |
252 |
agtctgtgtggaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggtacaaagttcagtacgagggtctccacctaatttgc |
351 |
Q |
| |
|
||||||||| || |||||||| || ||||||| || || |||||||||||||| ||||||||||||||| | |||||||| || || || ||||||||| |
|
|
| T |
7590678 |
agtctgtgttgagattgatcttacggtgccggtagtgggtaaaatttgggtcaatggacattggtacaaaatacagtacgaaggacttcatctaatttgc |
7590579 |
T |
|
| Q |
352 |
accaactgcggatgctatggtca |
374 |
Q |
| |
|
|| || || ||||| |||||||| |
|
|
| T |
7590578 |
actaattgtggatgttatggtca |
7590556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 262 - 374
Target Start/End: Complemental strand, 46787495 - 46787383
Alignment:
| Q |
262 |
gaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggtacaaagttcagtacgagggtctccacctaatttgcaccaactgcg |
361 |
Q |
| |
|
|||||||| || ||| | |||||||| |||||||| ||||| ||||||||||||||||| ||||| ||| | || || ||| ||||||| |||||||||| |
|
|
| T |
46787495 |
gaaattgaccttactgttccggtggtggggaaaatatgggtgaacggacattggtacaaggttcaatacaaagggctacacttaatttgtaccaactgcg |
46787396 |
T |
|
| Q |
362 |
gatgctatggtca |
374 |
Q |
| |
|
|||| || ||||| |
|
|
| T |
46787395 |
gatgttacggtca |
46787383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 368
Target Start/End: Complemental strand, 16773043 - 16772823
Alignment:
| Q |
148 |
gtatactatgatgagagtttcttgctagccatggcttctgctcttggccgccccatcaaggtcgacacaaacaccctgaaaattgaaagaggtaagtttg |
247 |
Q |
| |
|
||||||||||| || |||||| | ||||| |||||||| || |||| ||||| ||||| || ||||| || |||||||| | || ||||| | |||| |
|
|
| T |
16773043 |
gtatactatgacgaaagtttcctcctagcaatggcttcagcaattggacgcccaatcaaagttgacaccaataccctgaaggtcgagagaggaagatttg |
16772944 |
T |
|
| Q |
248 |
ccaaagtctgtgtggaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggtacaaagttcagtacgagggtctccacctaat |
347 |
Q |
| |
|
| | ||||||||| ||| ||||||| || | || ||||| || || || ||||| ||| | |||||||||||||| ||||| || ||||| |||||||| |
|
|
| T |
16772943 |
ctagagtctgtgtagaagttgatcttacggtaccagtggtgggaaagatatgggtgaactgtcattggtacaaagtccagtatgaaggtcttcacctaat |
16772844 |
T |
|
| Q |
348 |
ttgcaccaactgcggatgcta |
368 |
Q |
| |
|
|| ||| || || |||||||| |
|
|
| T |
16772843 |
tttcacaaattgtggatgcta |
16772823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 27784734 - 27784410
Alignment:
| Q |
18 |
catcacgggaggtccttggttaatatttgatcactgccttgcagtcacacactggtcacctgaatttgcatctccaaacgccaaagttgacaaaacaatt |
117 |
Q |
| |
|
|||||| ||||| ||||||||||| || ||||||||| | || ||| | ||||||||||| ||||| | |||||||| || || ||||| || || |
|
|
| T |
27784734 |
catcactggagggccttggttaatcttcgatcactgcttggctgtctcccactggtcaccggaattcacttctccaaatgcaaaggttgatcgcactgtt |
27784635 |
T |
|
| Q |
118 |
gtttgggtgagattcccaggtctgaacttagtatactatgatgagagtttcttgctagccatggcttctgctcttggccgccccatcaaggtcgacacaa |
217 |
Q |
| |
|
|||||||| | ||||| || | || | || ||||||||||||||||| | ||||| ||||| || || ||||||| ||||| || || || | | |
|
|
| T |
27784634 |
gtttgggtacgtttccctggcttaaatcttgtttactatgatgagagttttcttctagctatggcctcaactattggccggcccataaaagtggataaca |
27784535 |
T |
|
| Q |
218 |
acaccctgaaaattgaaagaggtaagtttgccaaagtctgtgtggaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggta |
317 |
Q |
| |
|
|||| || ||| | ||||||||||| ||||| | |||||| || ||| |||| || || | ||||||||||| ||||| ||||| || || |||||||| |
|
|
| T |
27784534 |
acactctcaaagtcgaaagaggtaaatttgcaagagtctgcgtagaagttgacctcacggttccggtggtaggaaaaatatgggttaatggtcattggta |
27784435 |
T |
|
| Q |
318 |
caaagttcagtacgagggtctccac |
342 |
Q |
| |
|
||| || ||||| || || |||||| |
|
|
| T |
27784434 |
caaggtgcagtatgaaggcctccac |
27784410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 317
Target Start/End: Complemental strand, 13030243 - 13029987
Alignment:
| Q |
61 |
gtcacacactggtcacctgaatttgcatctccaaacgccaaagttgacaaaacaattgtttgggtgagattcccaggtctgaacttagtatactatgatg |
160 |
Q |
| |
|
||||| ||||||||||| ||||||||||| ||||| ||||||||||| ||| |||||||||| | || || || || || ||||| || ||||||| |
|
|
| T |
13030243 |
gtcactcactggtcaccagaatttgcatcaccaaaagccaaagttgaacggacagttgtttgggtacgttttcctggcctaaatttagtctattatgatg |
13030144 |
T |
|
| Q |
161 |
agagtttcttgctagccatggcttctgctcttggccgccccatcaaggtcgacacaaacaccctgaaaattgaaagaggtaagtttgccaaagtctgtgt |
260 |
Q |
| |
|
| || ||||| || || ||||| |||||| |||||||||| || ||||| |||| || || || ||| |||||||||| || || ||| || ||||| |
|
|
| T |
13030143 |
aaagcttcttactggcaatggcctctgctattggccgcccgataaaggtatacactaatacactaaaagttgaaagaggaaaattcgcccgtgtttgtgt |
13030044 |
T |
|
| Q |
261 |
ggaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggta |
317 |
Q |
| |
|
||| | ||||| || |||| || || || ||||||||| | |||||||||||||| |
|
|
| T |
13030043 |
agaagtggatcttacagtgccagtagtgggaaaaatttggattaacggacattggta |
13029987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0836 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0836
Description:
Target: scaffold0836; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 2302 - 2351
Alignment:
| Q |
128 |
gattcccaggtctgaacttagtatactatgatgagagtttcttgctagcc |
177 |
Q |
| |
|
|||| |||||||| ||||| || ||||||||||| ||||||||||||||| |
|
|
| T |
2302 |
gatttccaggtctaaacttggtgtactatgatgaaagtttcttgctagcc |
2351 |
T |
|
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