View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7062_low_15 (Length: 320)
Name: NF7062_low_15
Description: NF7062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7062_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 18270248 - 18270554
Alignment:
| Q |
1 |
ctaaaggactaaattaaatttgaagtgaagttataagaattaaatggtttttgtttgtgataagcggattaagtgagcgatgtaagatgttgaaaagctc |
100 |
Q |
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| T |
18270248 |
ctaaaggactaaattaaatttgaagtgaagttataagaattaaatggtttttgtttttgataagcggatt----gagcgatgtaagatgttgacaagctc |
18270343 |
T |
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| Q |
101 |
agctggtgaagacctctttgcaagtgggtgcaaggccatgataaaatctttctttcaaccccgtgaagtaaaaaatgaaccttctccctctctgtgtgat |
200 |
Q |
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| T |
18270344 |
agctggtgaagacctctttgcaagtgggtgcaagggcatgataaaatctttctttcaaccccgtgaagtaaaaaatgaaccttctcc-tctctgtgtgat |
18270442 |
T |
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| Q |
201 |
gtggggggtgcatttgttttcctaggtgaatgtgttgtatcggcacaagccaattgtttggtacttggataaaatctatagggtttcctgtatcaaaaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
18270443 |
gtggggggtgcatttgttttcctaggtgaatgtgttgtatcggcacaagccaattgtttgatacttggataaaatctatagggtttcctgtatcaaaaac |
18270542 |
T |
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| Q |
301 |
agtgatgtccat |
312 |
Q |
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|||||||||||| |
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| T |
18270543 |
agtgatgtccat |
18270554 |
T |
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