View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7062_low_19 (Length: 295)
Name: NF7062_low_19
Description: NF7062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7062_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-147; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 9329649 - 9329365
Alignment:
| Q |
1 |
tcagaggtggttgttccaaaggtattaagagaagttatgtttcaactttcatgtcttagactaagtgatgcagctagattaactgagaaatcagaaattg |
100 |
Q |
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| T |
9329649 |
tcagaggtggttgttccaaaggtattaagagaagttatgtttcaactttcatgtcttagactaagtgatgcagctagattaactgagaaatcagaaattg |
9329550 |
T |
|
| Q |
101 |
aagttttataatccgtgttggagtccataatactactagccttctatgaatcaagcaaaca---ttttatccagacaacatgtttagcaatgaactcata |
197 |
Q |
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| T |
9329549 |
aagttttataatccgtgttggagtccataatactactagccttctatgaatcaagcaaacatttttttatccagacaacatgtttagcattgaactcata |
9329450 |
T |
|
| Q |
198 |
attcttaattacatattcaaatgaaaagatgctggaaaaagtggttgaatttggtttgttatgttatgttattttgatttgatgt |
282 |
Q |
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| T |
9329449 |
attcttaattacatattcaaatgaaaagatgctgggaaaagtggttgaatttggtttgttatgttatgttattttgatttgatgt |
9329365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 167 - 282
Target Start/End: Complemental strand, 9335286 - 9335171
Alignment:
| Q |
167 |
tccagacaacatgtttagcaatgaactcataattcttaattacatattcaaatgaaaagatgctggaaaaagtggttgaatttggtttgttatgttatgt |
266 |
Q |
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| T |
9335286 |
tccagacaacatgtttagcaatgaatttctaattcttaattacatattcagatgaaaagatgctggaaaaagtggttgaatttggtttgttatgttatgt |
9335187 |
T |
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| Q |
267 |
tattttgatttgatgt |
282 |
Q |
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| T |
9335186 |
tattttgatttgatgt |
9335171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 170
Target Start/End: Complemental strand, 9336184 - 9336120
Alignment:
| Q |
103 |
gttttataatccgtgttggagtccataatactactagccttctatgaatcaagcaaacattttatcca |
170 |
Q |
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|||| ||| ||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
9336184 |
gtttgatactccgtgttgtagtccataatgcta---gccttctatgaatcaagcaaacattttatcca |
9336120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 282
Target Start/End: Complemental strand, 9339949 - 9339917
Alignment:
| Q |
250 |
ggtttgttatgttatgttattttgatttgatgt |
282 |
Q |
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| T |
9339949 |
ggtttgttatgctatgttattttgatttgatgt |
9339917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 231111 - 231059
Alignment:
| Q |
203 |
taattacatattcaaatgaaaagatgctggaaaaagtggttgaatttggtttg |
255 |
Q |
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|||||||| ||||| ||||||||||||||||||| | ||| |||||||||||| |
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| T |
231111 |
taattacacattcatatgaaaagatgctggaaaacgaggtggaatttggtttg |
231059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 252067 - 252113
Alignment:
| Q |
203 |
taattacatattcaaatgaaaagatgctggaaaaagtggttgaattt |
249 |
Q |
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|||||||||||||| ||||||||||||||||||| | ||| |||||| |
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| T |
252067 |
taattacatattcatatgaaaagatgctggaaaatgaggtggaattt |
252113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 236
Target Start/End: Original strand, 8814852 - 8814898
Alignment:
| Q |
190 |
aactcataattcttaattacatattcaaatgaaaagatgctggaaaa |
236 |
Q |
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||||| ||| || |||||||||||||| ||||||||||||||||||| |
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| T |
8814852 |
aactcttaagtcctaattacatattcatatgaaaagatgctggaaaa |
8814898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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