View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7062_low_2 (Length: 920)
Name: NF7062_low_2
Description: NF7062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7062_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 163; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 153 - 323
Target Start/End: Original strand, 28447982 - 28448152
Alignment:
| Q |
153 |
tttgggctttggctggccttggcttcggtgttcctctctctggggttcctattttgtgcgttggaagttacggccttcaatcttttgttggagtggttgt |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28447982 |
tttgggctttggctggccttggcttcggtgttcctctctctggggttcctattttgtgcgttggaagttacggccttcaatcttttgttggagtggttgt |
28448081 |
T |
|
| Q |
253 |
ctatttctataggcgtcaggcctacagacctcccctctacatcgatgatgatggatgctagtggggccggg |
323 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28448082 |
ctatttctataggcatcagacctacagacctcccctctacatcgatgatgatggatgctagtggggccggg |
28448152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 1e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 477 - 580
Target Start/End: Original strand, 16060150 - 16060253
Alignment:
| Q |
477 |
ctatctttagggacttggaacagcccggaggagagcccgcacctcaaccagaggctgcgcagcctgggcaagttccagaagggccactgggggaagtctt |
576 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
16060150 |
ctatctttagggacttggaacagcccggaggagagcccgcacctcaaccagaggctgcgcagcatgggcaagttccagaagggccactaggggaagtctt |
16060249 |
T |
|
| Q |
577 |
tgag |
580 |
Q |
| |
|
|||| |
|
|
| T |
16060250 |
tgag |
16060253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 5e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 778 - 903
Target Start/End: Original strand, 2625175 - 2625298
Alignment:
| Q |
778 |
gtgggaatatcggccagagactcttacaaaccgactcgcccagttggatagagaggggaccaaatctcccttttccgggaacttctcgcattgcgcgaag |
877 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||| ||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
2625175 |
gtgggaatatcggacagagactcttacaaaccgactcacccagttggatagag--gggaccgaatctgccttttccgggaacttcttgcattgcgcgaag |
2625272 |
T |
|
| Q |
878 |
aatatccacaaaactgaccccctgat |
903 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
2625273 |
aatatccacaaaactgaccccctgat |
2625298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 630 - 741
Target Start/End: Original strand, 31772790 - 31772896
Alignment:
| Q |
630 |
agccccccatagatgatattctaactttgattaacctcaaaagtcaggttatattatatctcggatggccgagctggacccagaccctttctgggttgaa |
729 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||| |||||||||| ||||||| |
|
|
| T |
31772790 |
agccccccatagatgaaattataactttgattaacctcaaaagtcagg-----ttatatctcagatgggcgagctggaccccgaccctttctaggttgaa |
31772884 |
T |
|
| Q |
730 |
aaccgaaccagc |
741 |
Q |
| |
|
||||||| |||| |
|
|
| T |
31772885 |
aaccgaatcagc |
31772896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 156 - 233
Target Start/End: Original strand, 18690607 - 18690684
Alignment:
| Q |
156 |
gggctttggctggccttggcttcggtgttcctctctctggggttcctattttgtgcgttggaagttacggccttcaat |
233 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| |||||||| |
|
|
| T |
18690607 |
gggctttggttggccttggcttcggtgttcctctctctgaggttcctagtttttgcgttggaagttacaaccttcaat |
18690684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University