View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7062_low_20 (Length: 291)
Name: NF7062_low_20
Description: NF7062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7062_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 16749311 - 16749498
Alignment:
| Q |
1 |
atgtgcattacaatgttgtggcaatagaaatgttcttagnnnnnnngcctccaaaagagaactaggaacttgccatgaaatatccaacgcaaagccaaaa |
100 |
Q |
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| T |
16749311 |
atgtgcattacaacgttgtggcaatagaaatgttcttagtttttttgcctccaaaagagaactaggaacttgccatgaaatatccaacgcgaagccaaaa |
16749410 |
T |
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| Q |
101 |
gagacatgatgggttcccttttcaatatgctgctccttttcatttactatgacataattatttccagaaatgaatctagacagatcag |
188 |
Q |
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| T |
16749411 |
gagacatgacgggttcccttttcaatatgctgctccttttcatttactatgacataattatttccagaaatgaatctagacagatcag |
16749498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 276
Target Start/End: Original strand, 16749516 - 16749553
Alignment:
| Q |
239 |
gactatatcttgaaagaaagatctatgaagtaaagtca |
276 |
Q |
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| T |
16749516 |
gactataccttgaaagatagatctatgaagtaaagtca |
16749553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 212
Target Start/End: Original strand, 7721327 - 7721484
Alignment:
| Q |
55 |
aagagaactaggaacttgccatgaaatatccaacgcaaagccaaaagagacatgatgggttcccttttcaatatgctgctccttttcatttactatgaca |
154 |
Q |
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| T |
7721327 |
aagagaagttggaacttgccaggaagaatccaattcaaagccaaaagagacatgacggggttgtttatcaatatgctgcccctttttattaactaaaaga |
7721426 |
T |
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| Q |
155 |
taattatttccagaaatgaatctagacagatcagccacaatatcatgcattttgaaag |
212 |
Q |
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| T |
7721427 |
tagtcatttcttgaaataaaacttgccagatcatgcacaatatcatgcatttggaaag |
7721484 |
T |
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