View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7062_low_23 (Length: 242)
Name: NF7062_low_23
Description: NF7062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7062_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 6 - 123
Target Start/End: Original strand, 40803516 - 40803633
Alignment:
| Q |
6 |
acttactgatggttggtaagtccttggcattctcaagaaatctgaaacctccctcacaactgcttgaactcacctacaattaggatggatgcatgtggtt |
105 |
Q |
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| T |
40803516 |
acttactgatggttggtaagtccttggcattctcaagaaatctgaaacctccctcacaactgcttgaactcacctacaattaggatggatgcatgtggtt |
40803615 |
T |
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| Q |
106 |
acaacttacaacttacaa |
123 |
Q |
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| T |
40803616 |
acaacttaaaacttacaa |
40803633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 52516755 - 52516854
Alignment:
| Q |
125 |
ttacaaataacatcatcgaagccgtattactttacaaagttatgacacgaaatttggcagcagttaacaagtcaatatcatcatttctccttggagatgt |
224 |
Q |
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| T |
52516755 |
ttacaaataacattatcgacgccatattactttgcaaagttataatacgaaatttggtagcagttaacaagtcaatatcatcatttctccttagagatgt |
52516854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 40803647 - 40803689
Alignment:
| Q |
182 |
cagcagttaacaagtcaatatcatcatttctccttggagatgt |
224 |
Q |
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| T |
40803647 |
cagcagttaacaagtcaatatcatcatttctccttggagatgt |
40803689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 109
Target Start/End: Original strand, 52516710 - 52516760
Alignment:
| Q |
59 |
tcacaactgcttgaactcacctacaattaggatggatgcatgtggttacaa |
109 |
Q |
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| T |
52516710 |
tcacaactgcttgaactagcctacagttaggatggatgcatgtggttacaa |
52516760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 52516681 - 52516710
Alignment:
| Q |
6 |
acttactgatggttggtaagtccttggcat |
35 |
Q |
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| T |
52516681 |
acttactgatggttggtaagtccttggcat |
52516710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 6 - 213
Target Start/End: Complemental strand, 41031954 - 41031765
Alignment:
| Q |
6 |
acttactgatggttggtaagtccttggcattctcaagaaatctgaaacctccctcacaactgcttgaact---cacctacaattaggatggatgcatgtg |
102 |
Q |
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| T |
41031954 |
acttactgatggttggtaagtccttggcattctcgagaaatctgaagcctccctcacagctgcttgaactcgccacctacaattaggatggatgcatgtg |
41031855 |
T |
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| Q |
103 |
gttacaacttacaacttacaacttacaaataacatcatcgaagccgtattactttacaaagttatgacacgaaatttggcagcagttaacaagtcaatat |
202 |
Q |
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| T |
41031854 |
gtta---------------------caaataacattatcgaagccatattactttacaaagttatgatatgaaatttggcagcagttaacaagtcaatat |
41031776 |
T |
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