View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7062_low_3 (Length: 537)

Name: NF7062_low_3
Description: NF7062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7062_low_3
NF7062_low_3
[»] chr3 (1 HSPs)
chr3 (18-172)||(1153009-1153164)
[»] chr5 (4 HSPs)
chr5 (16-122)||(35364705-35364812)
chr5 (16-151)||(35404397-35404533)
chr5 (16-128)||(35752656-35752769)
chr5 (16-117)||(35374256-35374358)
[»] chr8 (1 HSPs)
chr8 (19-128)||(13563203-13563313)
[»] chr7 (1 HSPs)
chr7 (21-144)||(29625356-29625480)
[»] chr2 (4 HSPs)
chr2 (16-128)||(30633132-30633245)
chr2 (16-128)||(30660861-30660974)
chr2 (16-128)||(30669541-30669654)
chr2 (16-99)||(30631057-30631140)
[»] chr1 (3 HSPs)
chr1 (16-122)||(10417928-10418035)
chr1 (16-122)||(10412205-10412312)
chr1 (19-117)||(10421848-10421947)


Alignment Details
Target: chr3 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 1153164 - 1153009
Alignment:
Q  18 gaccacatttaaccccttgccatttacaaaaatgtagagactcattccatgacggcagaaaatcaggcacgccatttgtaagt-ttttcttcaaagcaag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  1153164 gaccacatttaaccccttgccatttacaaaaatgtagagactcattccatgacggcagagaatcaggcacgccatttgtaagttttttcttcaaagcaag 1153065  T
Q  117 caaagctagcttgtccgtgtctgaactcagagagaacaacggttactagtagcatg 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1153064 caaagctagcttgtccgtgtctgaactcagagagaacaacggttactagtagcatg 1153009  T

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Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 35364812 - 35364705
Alignment:
Q  16 acgaccacatttaaccccttgccatttacaaaaatgtagagactcattccatgacggcagaaaatcaggcacgccatttgtaagtttttc-ttcaaagca 114  Q
    |||||||||| ||| ||||||||||| ||| ||||||||||||||||||||||| |||||| |||||| ||| ||||||||||| ||||| |||||||||    
T  35364812 acgaccacatgtaatcccttgccattcacagaaatgtagagactcattccatgatggcagagaatcagacacaccatttgtaagcttttctttcaaagca 35364713  T
Q  115 agcaaagc 122  Q
    ||||||||    
T  35364712 agcaaagc 35364705  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 151
Target Start/End: Complemental strand, 35404533 - 35404397
Alignment:
Q  16 acgaccacatttaaccccttgccatttacaaaaatgtagagactcattccatgacggcagaaaatcaggcacgccatttgtaag-tttttcttcaaagca 114  Q
    |||||||||| ||| ||||||||||| ||||||||||||||||| ||||||||| |||| | |||| || || ||||||||||| |||| |||||| |||    
T  35404533 acgaccacatgtaatcccttgccattcacaaaaatgtagagacttattccatgatggcaaagaatctggtacaccatttgtaagcttttccttcaatgca 35404434  T
Q  115 agcaaagctagcttgtccgtgtctgaactcagagaga 151  Q
    |||||||| ||||| || || | |||||||| |||||    
T  35404433 agcaaagccagcttatcagtctttgaactcaaagaga 35404397  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 35752769 - 35752656
Alignment:
Q  16 acgaccacatttaaccccttgccatttacaaaaatgtagagactcattccatgacggcagaaaatcaggcacgccatttgtaag-tttttcttcaaagca 114  Q
    |||||||||| ||| |||||||||   ||| ||||||||||||||||||||||| |||| | |||| || || ||||||||||| |||| ||| ||||||    
T  35752769 acgaccacatgtaatcccttgccacacacagaaatgtagagactcattccatgatggcaaagaatctggtacaccatttgtaagcttttcctttaaagca 35752670  T
Q  115 agcaaagctagctt 128  Q
    |||||||| |||||    
T  35752669 agcaaagcaagctt 35752656  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 35374358 - 35374256
Alignment:
Q  16 acgaccacatttaaccccttgccatttacaaaaatgtagagactcattccatgacggcagaaaatcaggcacgccatttgtaag-tttttcttcaaagca 114  Q
    |||||||||| |||| |||||||||| ||| ||||||| ||||||||||||||| || ||| | || || || |||||||| || |||| ||||||||||    
T  35374358 acgaccacatgtaactccttgccattcacagaaatgtaaagactcattccatgatggaagagagtctggtacaccatttgtgagcttttccttcaaagca 35374259  T
Q  115 agc 117  Q
    |||    
T  35374258 agc 35374256  T

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Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 13563313 - 13563203
Alignment:
Q  19 accacatttaaccccttgccatttacaaaaatgtagagactcattccatgacggcagaaaatcaggcacgccatttgtaag-tttttcttcaaagcaagc 117  Q
    ||||||| ||||||| ||||||| ||| ||||||||||||||||||||||| || ||| |||| ||||||||||||||||| |||| || ||||||||||    
T  13563313 accacatgtaaccccctgccattcacagaaatgtagagactcattccatgatggtagagaatcgggcacgccatttgtaagcttttcctacaaagcaagc 13563214  T
Q  118 aaagctagctt 128  Q
    |||||||||||    
T  13563213 aaagctagctt 13563203  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 144
Target Start/End: Original strand, 29625356 - 29625480
Alignment:
Q  21 cacatttaaccccttgccatttacaaaaatgtagagactcattccatgacggcagaaaatcaggcacgccatttgtaag-tttttcttcaaagcaagcaa 119  Q
    ||||| ||| ||||||||||| ||| ||||||| ||||||||||||||| |||||| |||| | ||| ||||| ||||| |||| |||||||||||||||    
T  29625356 cacatgtaatcccttgccattcacagaaatgtaaagactcattccatgatggcagagaatccgacaccccattcgtaagcttttccttcaaagcaagcaa 29625455  T
Q  120 agctagcttgtccgtgtctgaactc 144  Q
    ||| ||||| || ||||||||||||    
T  29625456 agcgagcttatcagtgtctgaactc 29625480  T

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Target: chr2 (Bit Score: 54; Significance: 9e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 30633245 - 30633132
Alignment:
Q  16 acgaccacatttaaccccttgccatttacaaaaatgtagagactcattccatgacggcagaaaatcaggcacgccatttgtaag-tttttcttcaaagca 114  Q
    |||||||||| ||| ||||| ||||| ||| ||||||||||||||||||||||| |||| | |||| |  || ||||||||||| |||| ||||||||||    
T  30633245 acgaccacatgtaatcccttcccattcacagaaatgtagagactcattccatgatggcaaataatctgatacaccatttgtaagcttttccttcaaagca 30633146  T
Q  115 agcaaagctagctt 128  Q
    ||||||||||||||    
T  30633145 agcaaagctagctt 30633132  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 30660974 - 30660861
Alignment:
Q  16 acgaccacatttaaccccttgccatttacaaaaatgtagagactcattccatgacggcagaaaatcaggcacgccatttgtaag-tttttcttcaaagca 114  Q
    |||||||||| ||| ||||| ||||| ||| ||||||||||||||||||||||| |||| | |||| |  || ||||||||||| |||| ||||||||||    
T  30660974 acgaccacatgtaatcccttcccattcacagaaatgtagagactcattccatgatggcaaataatctgatacaccatttgtaagcttttccttcaaagca 30660875  T
Q  115 agcaaagctagctt 128  Q
    ||||||||||||||    
T  30660874 agcaaagctagctt 30660861  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 30669654 - 30669541
Alignment:
Q  16 acgaccacatttaaccccttgccatttacaaaaatgtagagactcattccatgacggcagaaaatcaggcacgccatttgtaag-tttttcttcaaagca 114  Q
    |||||||||| ||| ||||| ||||| ||| ||||||||||||||||||||||| |||| | |||  || || ||||||||||| |||| ||||||||||    
T  30669654 acgaccacatgtaatcccttcccattcacagaaatgtagagactcattccatgatggcaaataatatggtacaccatttgtaagcttttccttcaaagca 30669555  T
Q  115 agcaaagctagctt 128  Q
    |||||||| |||||    
T  30669554 agcaaagccagctt 30669541  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 30631140 - 30631057
Alignment:
Q  16 acgaccacatttaaccccttgccatttacaaaaatgtagagactcattccatgacggcagaaaatcaggcacgccatttgtaag 99  Q
    |||||||||| ||| ||||| ||||| ||| ||||||||||||||||||||||| |||| | |||| || || |||||||||||    
T  30631140 acgaccacatgtaatcccttcccattcacagaaatgtagagactcattccatgatggcaaataatctggtacaccatttgtaag 30631057  T

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Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 10417928 - 10418035
Alignment:
Q  16 acgaccacatttaaccccttgccatttacaaaaatgtagagactcattccatgacggcagaaaatcaggcacgccatttgtaag-tttttcttcaaagca 114  Q
    |||||||||| ||| ||||||||| | ||| |||||||||||||||||| |||| |||| | |||| || || ||||||||||| |||| ||||||||||    
T  10417928 acgaccacatctaatcccttgccaatcacagaaatgtagagactcattctatgatggcaaagaatctggtacaccatttgtaagcttttccttcaaagca 10418027  T
Q  115 agcaaagc 122  Q
    ||||||||    
T  10418028 agcaaagc 10418035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 10412205 - 10412312
Alignment:
Q  16 acgaccacatttaaccccttgccatttacaaaaatgtagagactcattccatgacggcagaaaatcaggcacgccatttgtaag-tttttcttcaaagca 114  Q
    |||||| |||| ||| || ||||||| ||| ||||||||||||||||||||||| |||| | ||||  | || ||||||||||| |||| ||||||||||    
T  10412205 acgaccgcattcaactccctgccattcacagaaatgtagagactcattccatgatggcaaagaatcttgtacaccatttgtaagcttttccttcaaagca 10412304  T
Q  115 agcaaagc 122  Q
    ||||||||    
T  10412305 agcaaagc 10412312  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 10421848 - 10421947
Alignment:
Q  19 accacatttaaccccttgccatttacaaaaatgtagagactcattccatgacggcagaaaatcaggcacgccatttgtaagtttttc-ttcaaagcaagc 117  Q
    ||||||| ||| ||| ||||| | ||| |||| |||||||||||||||||| |||| | |||| || || |||||||||||  |||| ||||||||||||    
T  10421848 accacatgtaatcccctgccactcacagaaatatagagactcattccatgatggcaaagaatctggtacaccatttgtaagcgtttctttcaaagcaagc 10421947  T

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