View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7062_low_4 (Length: 466)
Name: NF7062_low_4
Description: NF7062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7062_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 15 - 445
Target Start/End: Original strand, 8059993 - 8060423
Alignment:
| Q |
15 |
ctgtggtggatgaatttgaaggcatcaagatttaatggatgcttactcaaaaaaccaacagtgatctttctaaaaatcccaatatgcaagctgatgagat |
114 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8059993 |
ctgtggtggatgaatttgaaggcatcaagattaaatggatgcttactcaaaaaaccaacagtggtctttctaaaaatcccaatatgcaagctgatgagat |
8060092 |
T |
|
| Q |
115 |
cctatatcagttaaatattaagcctaagccaaaacaaacgggggagaatgggtttgtgttaagttttgatgagaagcatagagataaagtaatggagaag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8060093 |
cctatatcagttaaatattaagcctaagccaaaacaaacgggggagaatgggtttgtgttaagttttgatgagaagcatagagataaagtaatggagaag |
8060192 |
T |
|
| Q |
215 |
tatattccacatgttttaggcacttatgaagctatgcaagcagataatagaactctcaagatccattcaatgcaaggtgcttgtctgcaaagtagtttta |
314 |
Q |
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|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||| |
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| T |
8060193 |
tatattccacatgttttaagcccttatgaagctatgcaagcagataatagaactctcaagatccattcattgcaaggtgcttggctacaaagtagtttta |
8060292 |
T |
|
| Q |
315 |
atcatcgagcttcatttgattcaattgctttggatcctgatttaaagaaagctataattgatgatttagatagattcttgaggaggaaaaagatgtataa |
414 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8060293 |
atcatccagcttcatttgattcaattgctttggatcctgatttaaagaaagctataattgatgatttagatagattcttgaggaggaaaaagatgtataa |
8060392 |
T |
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| Q |
415 |
aaaagttggtaagccttggaaacgtgggtac |
445 |
Q |
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| T |
8060393 |
aaaagttggtaagccttggaaacgtgggtac |
8060423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 161 - 446
Target Start/End: Original strand, 8051946 - 8052234
Alignment:
| Q |
161 |
aatgggtttgtgttaagttttgatgagaagcatagagataaagtaatggagaagtatattccacatgttttaggcacttatgaagctatgcaagcagata |
260 |
Q |
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| T |
8051946 |
aatgggtttgtgttaagttttgatgagaagcatagagataaagtaatggaaaagtatattccacatgttttaagcacttatgaagctataaaagcaggaa |
8052045 |
T |
|
| Q |
261 |
atagaactctcaagatccattcaatgcaa---ggtgcttgtctgcaaagtagttttaatcatcgagcttcatttgattcaattgctttggatcctgattt |
357 |
Q |
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||| |||||| ||||| |||||||||||| || | || |||||| ||| | |||| ||||||||||||||| ||||| ||||||||||| | |
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| T |
8052046 |
ataaaactcttaagattcattcaatgcaatctggaccatggaaacaaagtgatttaacacatcctgcttcatttgattcacttgctatggatcctgatct |
8052145 |
T |
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| Q |
358 |
aaagaaagctataattgatgatttagatagattcttgaggaggaaaaagatgtataaaaaagttggtaagccttggaaacgtgggtact |
446 |
Q |
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| T |
8052146 |
aaaaaattctataattgatgatttagatcgatttttgaggaggaaaaagttgtataaaaaagttggtaagccttggaaacgtggttact |
8052234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 329 - 402
Target Start/End: Complemental strand, 32360366 - 32360293
Alignment:
| Q |
329 |
tttgattcaattgctttggatcctgatttaaagaaagctataattgatgatttagatagattcttgaggaggaa |
402 |
Q |
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||||| ||| |||||||||| | | || ||||||||| ||||||||||||||||||| ||| ||||||||||| |
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| T |
32360366 |
tttgactcacttgctttggaacgtcatctaaagaaagttataattgatgatttagatcaatttttgaggaggaa |
32360293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 12 - 445
Target Start/End: Complemental strand, 47547744 - 47547311
Alignment:
| Q |
12 |
aacctgtggtggatgaatttgaaggcatcaagatttaatggatgcttactcaaaaaaccaacagtgatctttctaaaaatcccaatatgcaagctgatga |
111 |
Q |
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|||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
47547744 |
aaccagtggttgatgaatttgaaggcatcaagattaaatggatgcttactcaaaaaaccaacagtggtctttctaaaaatcccaatatgcaagctgatga |
47547645 |
T |
|
| Q |
112 |
gatcctatatcagttaaatattaagcctaagccaaaacaaacgggggagaatgggtttgtgttaagttttgatgagaagcatagagataaagtaatggag |
211 |
Q |
| |
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|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
47547644 |
gatcttatatcagttatatattaagcctaagccaaaataaacgggggagaatgggtttgtgttaagttttgatgagaagcatagatataaagtgatggag |
47547545 |
T |
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| Q |
212 |
aagtatattccacatgttttaggcacttatgaagctatgcaagcagataatagaactctcaagatccattcaatgcaaggtgcttgtctgcaaagtagtt |
311 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||| |
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| T |
47547544 |
aagtatattccacatgttttaagcacttatgaagctatgcaagcagataatagaactctcaagatccattcattgcaaggtgcttggcttcaaagtagtt |
47547445 |
T |
|
| Q |
312 |
ttaatcatcgagcttcatttgattcaattgctttggatcctgatttaaagaaagctataattgatgatttagatagattcttgaggaggaaaaagatgta |
411 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47547444 |
ttaatcatccagcttcatttgattcaattgctttggatcctgatttaaagaaagctataattgatgatttagatagattcttgaggaggaaaaagatgta |
47547345 |
T |
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| Q |
412 |
taaaaaagttggtaagccttggaaacgtgggtac |
445 |
Q |
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|||||||||||| ||||||||||||||||||||| |
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| T |
47547344 |
taaaaaagttggcaagccttggaaacgtgggtac |
47547311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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