View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7062_low_6 (Length: 449)
Name: NF7062_low_6
Description: NF7062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7062_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 1e-88; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 244 - 421
Target Start/End: Complemental strand, 19592907 - 19592730
Alignment:
| Q |
244 |
aatatttattccatcgaacactatctacaccgcagctaccatcccaatccaatgcaccattttcaacgcaacgaccacaaccaccatatcaatttattgc |
343 |
Q |
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| T |
19592907 |
aatatttattccatcgaacactatctacaccgcagctaccatcccaatccaatgcaccattttcaacgcagcgaccacaaccaccatatcaatttattgc |
19592808 |
T |
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| Q |
344 |
accatcatattcgtcgcagcagccaccacgaccaccatatcaatttagtcgaccatcattttcgtcgcaaccaccaca |
421 |
Q |
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| T |
19592807 |
accatcatattcgtcgcagcagccaccacgaccaccatatcattttagtcgaccatcatttttgtcgcaaccaccaca |
19592730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 24 - 177
Target Start/End: Complemental strand, 19593106 - 19592953
Alignment:
| Q |
24 |
gcttcgtctcacttcctaatagtgtggatcaattgccatttgtacccattcctcaaccgattctatttttctaagtgtattgtgacatatgctattttaa |
123 |
Q |
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| T |
19593106 |
gcttcgtctcacttcctaatagtgtggatcaattgccatttgtacccattcctcaaccgattctatttttctaagtgtattgtgacatatgctattttaa |
19593007 |
T |
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| Q |
124 |
atcatatcacattgaaagtcactatggctcacaaacaaccaacatcttcatcgg |
177 |
Q |
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| T |
19593006 |
atcatatcacattgaaagtcactatggctcacaaacaaccaacatcttcatcgg |
19592953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 334
Target Start/End: Complemental strand, 19597480 - 19597423
Alignment:
| Q |
277 |
agctaccatcccaatccaatgcaccattttcaacgcaacgaccacaaccaccatatca |
334 |
Q |
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| T |
19597480 |
agctaccatcacaatccaatacaccatcttcaccgcagccaccacgaccaccatatca |
19597423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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