View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7063_high_4 (Length: 404)
Name: NF7063_high_4
Description: NF7063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7063_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 5920733 - 5921117
Alignment:
| Q |
1 |
agaaacaaaaggagtgacttggacatggttggtggtggcatttgaagtagaagggagagatgatgaggaaaccaaactagcatgttgtagcaa-ggaaac |
99 |
Q |
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| T |
5920733 |
agaaacaaaaggagtgacttggatatggttggtggtggaatttgaagtagaagggagagatgatgaggaaaccaaacttgcctgttgtagcaaaggaaac |
5920832 |
T |
|
| Q |
100 |
aagttgagtatattgctctggagacaaacaagtaccagaacctgtagagccccccaaaccatgatccaatgcaccattttcatcaaggatctcatgagta |
199 |
Q |
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| T |
5920833 |
aagttgagtatattgctctggagacaaacaggtaccagaacctgtagagccccccaaaccatgatccaatgcaccattttcatcaaggatctcatgagta |
5920932 |
T |
|
| Q |
200 |
gctgcatttactctagattgttgcttaggaaaactagggtggccatgtttttgataacaaaaatcaactgtgtgattagtcttgtgacaaaaggtgcaat |
299 |
Q |
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| T |
5920933 |
gctgcatttcctcttgattgttgcttaggaaaactagggtagccatgtttttgataacaaaaatcaattgtgtgattagtcttgtgacaaaaggtgcaat |
5921032 |
T |
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| Q |
300 |
acctagtaggtttttgagaatgaacaaaagagaacctttaccacgtccttgtgatttcttaacctcagaagcattcaattgtatgtt |
386 |
Q |
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| T |
5921033 |
acgtagtaggtttttgagaatgaacaaa--agaacctttaccacgtccttgtgatttcttaacctcataagcattcaattgtatgtt |
5921117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 26968778 - 26968721
Alignment:
| Q |
71 |
accaaactagcatgttgtagcaaggaaacaagttgagtatattgctctggagacaaac |
128 |
Q |
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| T |
26968778 |
accaaactagcctgttgtagcaaggaaactagttgagcatattgctcttgagataaac |
26968721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 242 - 297
Target Start/End: Complemental strand, 17118969 - 17118914
Alignment:
| Q |
242 |
ccatgtttttgataacaaaaatcaactgtgtgattagtcttgtgacaaaaggtgca |
297 |
Q |
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|||||||||||||||||||||||||| || |||||| |||||| | |||| ||||| |
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| T |
17118969 |
ccatgtttttgataacaaaaatcaacagtatgattattcttgttaaaaaatgtgca |
17118914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 2 - 386
Target Start/End: Original strand, 20325043 - 20325419
Alignment:
| Q |
2 |
gaaacaaaaggagtgacttggacatggttggtggtggcatttgaagtagaagggagagatgatgaggaaaccaaactagcatgttgtagcaaggaaacaa |
101 |
Q |
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| T |
20325043 |
gaaacaaaaggagtggtttggacatgattggtggtagcatttgaagtaggaggaggagatgatgaggaaatcaaactagcctgctgcagcaaggaaacaa |
20325142 |
T |
|
| Q |
102 |
gttgagtatattgctctggagacaaacaagtaccagaacctgtagagccccccaaaccatgatccaatgcaccattttcatcaaggatctcatgagtagc |
201 |
Q |
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| T |
20325143 |
gttgagtatattgctctggagacaaactagtaccagaacctgtagagccccccaaaccatgatccaatgcaccattttcatcagggatctcatgagaa-- |
20325240 |
T |
|
| Q |
202 |
tgcatttactctagattgttgcttaggaaaactagggtggccatgtttttgataacaaaaatcaactgtgtgattagtcttgtgacaaaaggtgcaatac |
301 |
Q |
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| T |
20325241 |
-gcagtcactttagattgttgcttaggaaaactaggatgaccatgtagttgataacaaaaatcaactgtgtgattagttttgtgacaaaaagtgcagtac |
20325339 |
T |
|
| Q |
302 |
ctagtaggtttttgagaatgaacaaaagagaacctttaccacgtccttgtgatttcttaacctcagaagcattcaattgtatgtt |
386 |
Q |
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| T |
20325340 |
ctattaggtttttgagaattaacaa-----aacctttaccacgtccttgggatttcttaacctcagaagcattcaattgtatgtt |
20325419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 291
Target Start/End: Complemental strand, 15756259 - 15756210
Alignment:
| Q |
242 |
ccatgtttttgataacaaaaatcaactgtgtgattagtcttgtgacaaaa |
291 |
Q |
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| T |
15756259 |
ccatgtttttgatagcaaaattccaaagtgtgattagtcttgtgacaaaa |
15756210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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