View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7063_high_5 (Length: 327)
Name: NF7063_high_5
Description: NF7063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7063_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 47239184 - 47238862
Alignment:
| Q |
1 |
aattggacatcaactcaaacaagccatgaatattgtagctagttgccctagctaactcataaaaaactacattgacttgtcttgtagagaacttaacgag |
100 |
Q |
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| T |
47239184 |
aattggacatcaactcaaacaagccatgaatattgaagctagttgccctggctaactcataaaaaactacattgacttgtcttgtagagaactcaacgag |
47239085 |
T |
|
| Q |
101 |
ttcagac-----aataatnnnnnnngataaataatgaattgtctaacaattaaaccaaaataagataattcgggaataagtttattgaaattattcattt |
195 |
Q |
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| T |
47239084 |
ttcagaccataaaaaaaaaaaaaaagataaataatgaattgtctaacaattaaaccaaaataagataattcgggaataagtttattgaaattattcattt |
47238985 |
T |
|
| Q |
196 |
tgacttgttnnnnnnngtttattaaaactatcaatcactcatttagcaccgatataaagtttaaagatgacattttttgaaggaagtttaaagatgacat |
295 |
Q |
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| T |
47238984 |
tagcttgttcaaaaaagtttat------tatcaatcactcatttagcaccgatatcaagtttaaaggtgaccatttttgaaggaagtttaaagatgacat |
47238891 |
T |
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| Q |
296 |
taacaagccacatttcagcaattcaattt |
324 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
47238890 |
taacaagccacatttcagcaattcaattt |
47238862 |
T |
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