View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7063_low_1 (Length: 544)

Name: NF7063_low_1
Description: NF7063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7063_low_1
NF7063_low_1
[»] chr6 (4 HSPs)
chr6 (253-525)||(30702288-30702560)
chr6 (16-232)||(30700823-30701051)
chr6 (471-518)||(30705100-30705147)
chr6 (469-525)||(30705404-30705460)
[»] chr7 (4 HSPs)
chr7 (283-398)||(5291155-5291270)
chr7 (319-403)||(9064528-9064612)
chr7 (400-441)||(24658451-24658492)
chr7 (469-525)||(30074562-30074618)
[»] chr1 (4 HSPs)
chr1 (327-385)||(25516657-25516715)
chr1 (283-379)||(24155063-24155159)
chr1 (477-525)||(8065104-8065152)
chr1 (477-525)||(9539547-9539595)
[»] chr4 (3 HSPs)
chr4 (469-525)||(1112115-1112171)
chr4 (337-406)||(12605546-12605615)
chr4 (319-384)||(21817158-21817223)
[»] chr3 (1 HSPs)
chr3 (400-440)||(26285859-26285899)
[»] scaffold0040 (1 HSPs)
scaffold0040 (332-382)||(8844-8894)
[»] chr8 (2 HSPs)
chr8 (400-441)||(44873313-44873354)
chr8 (477-525)||(29866289-29866337)


Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 253 - 525
Target Start/End: Original strand, 30702288 - 30702560
Alignment:
Q  253 ctatgattacaacaattctaccacaaacacaaattcttattcatccaaaccttcgtccttcaatgaagatactacacaattttcatggtggaaaagtaat 352  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30702288 ctatgattacaacaattctaccacagacacaaattcttattcacccaaaccttcgtccttcaatgaagatactacacaattttcatggtggaaaagtaat 30702387  T
Q  353 atgtatagtcacatcattgatgttgatgatgagatatggaacatcattgaaaatcgtttactatccagttgttgaaaatgagttaaaattgtttgataca 452  Q
    ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30702388 atgtacaatcacatcattgatgttgatgatgagatatggaacatcattgaaaatcgtttacaatccagttgttgaaaatgagttaaaattgtttgataca 30702487  T
Q  453 atacaactaaaatggaacaagatagtcatttaaccattgatcatccattttgttacatagttgactctgcaca 525  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||| ||||||    
T  30702488 atacaactaaaatggaacaagatagtcatttaactattgattatccattctgttacatagttgactttgcaca 30702560  T

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Target: chr6; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 30700823 - 30701051
Alignment:
Q  16 atattgctaccactgcaattcacaagagagtctattaagaacacaatattcagttcaaaacttaacttgaggattccaagag-----ataagagccaata 110  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||     ||||||||||| |    
T  30700823 atattgcaaccactgcaattcacaagagagtctattaagaacacaatattcagttcaaaacttaacttgagtactccaagagatgacataagagccaaaa 30700922  T
Q  111 aatacgcagtaaccagaaacaaagtgtcaggtagcaagggaagatgtcaatt-------agcaaactcaaatagcgtcataggagaattcgccaagaaga 203  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||| |||||       |||||||||||||||||||||||||||||| ||||||||||    
T  30700923 aatacgcagtaaccagaaataaagtgtcaggtagtaagggaagatgccaattccaagtaagcaaactcaaatagcgtcataggagaattggccaagaaga 30701022  T
Q  204 aaagtccctttgttgagaagctcttcaaa 232  Q
    |||||||||||||||||||||||||||||    
T  30701023 aaagtccctttgttgagaagctcttcaaa 30701051  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 471 - 518
Target Start/End: Original strand, 30705100 - 30705147
Alignment:
Q  471 aagatagtcatttaaccattgatcatccattttgttacatagttgact 518  Q
    ||||| |||||||| |||||||||| ||||||||||||||||||||||    
T  30705100 aagatggtcatttagccattgatcacccattttgttacatagttgact 30705147  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 469 - 525
Target Start/End: Original strand, 30705404 - 30705460
Alignment:
Q  469 acaagatagtcatttaaccattgatcatccattttgttacatagttgactctgcaca 525  Q
    ||||||| |||||||| ||| |||||| | |||||||||||||||||| ||| ||||    
T  30705404 acaagatggtcatttagccactgatcaccgattttgttacatagttgattcttcaca 30705460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 283 - 398
Target Start/End: Original strand, 5291155 - 5291270
Alignment:
Q  283 aaattcttattcatccaaaccttcgtccttcaatgaagatactacacaattttcatggtggaaaagtaatatgtatagtcacatcattgatgttgatgat 382  Q
    |||||| |||||  ||| |||||||  |||||||| |||| || ||||||||||||||||||||||||| ||||||| ||||||||| | | ||||||||    
T  5291155 aaattcatattctgccagaccttcgatcttcaatggagatgctgcacaattttcatggtggaaaagtaaaatgtataatcacatcatcggtcttgatgat 5291254  T
Q  383 gagatatggaacatca 398  Q
    ||| | ||| ||||||    
T  5291255 gagttgtgggacatca 5291270  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 319 - 403
Target Start/End: Complemental strand, 9064612 - 9064528
Alignment:
Q  319 agatactacacaattttcatggtggaaaagtaatatgtatagtcacatcattgatgttgatgatgagatatggaacatcattgaa 403  Q
    |||| ||||| | ||||| |||||||||||||| ||||||||||| ||||||| |||||| |||||  | |||||||||||||||    
T  9064612 agatcctacaaagttttcttggtggaaaagtaagatgtatagtcatatcattggtgttgaagatgaactttggaacatcattgaa 9064528  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 400 - 441
Target Start/End: Original strand, 24658451 - 24658492
Alignment:
Q  400 tgaaaatcgtttactatccagttgttgaaaatgagttaaaat 441  Q
    |||||||||||| ||||||| |||||||||||||||||||||    
T  24658451 tgaaaatcgtttcctatccatttgttgaaaatgagttaaaat 24658492  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 469 - 525
Target Start/End: Complemental strand, 30074618 - 30074562
Alignment:
Q  469 acaagatagtcatttaaccattgatcatccattttgttacatagttgactctgcaca 525  Q
    ||||||| |||||||| ||||||||||  ||||||||||||||| | ||||| ||||    
T  30074618 acaagatggtcatttagccattgatcactcattttgttacataggttactcttcaca 30074562  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 327 - 385
Target Start/End: Complemental strand, 25516715 - 25516657
Alignment:
Q  327 cacaattttcatggtggaaaagtaatatgtatagtcacatcattgatgttgatgatgag 385  Q
    |||||||||| ||||||||||| || |||||||||||| ||||||||||||||||||||    
T  25516715 cacaattttcttggtggaaaagaaaaatgtatagtcacgtcattgatgttgatgatgag 25516657  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 379
Target Start/End: Original strand, 24155063 - 24155159
Alignment:
Q  283 aaattcttattcatccaaaccttcgtccttcaatgaagatactacacaattttcatggtggaaaagtaatatgtatagtcacatcattgatgttgat 379  Q
    ||||||||||| |||   |||| | || ||||||| |||| ||  ||||||||| ||||||||||| || ||||||||||||||||||||| |||||    
T  24155063 aaattcttatttatctggacctccatctttcaatggagatgctgaacaattttcttggtggaaaagcaagatgtatagtcacatcattgatattgat 24155159  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 477 - 525
Target Start/End: Original strand, 8065104 - 8065152
Alignment:
Q  477 gtcatttaaccattgatcatccattttgttacatagttgactctgcaca 525  Q
    |||||||||||| |||||||||||||| |||||||| | ||||| ||||    
T  8065104 gtcatttaaccaatgatcatccattttattacataggttactcttcaca 8065152  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 477 - 525
Target Start/End: Complemental strand, 9539595 - 9539547
Alignment:
Q  477 gtcatttaaccattgatcatccattttgttacatagttgactctgcaca 525  Q
    ||||||||  |||||||||||||||||||||||||| | ||||| ||||    
T  9539595 gtcatttagtcattgatcatccattttgttacataggttactcttcaca 9539547  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 469 - 525
Target Start/End: Original strand, 1112115 - 1112171
Alignment:
Q  469 acaagatagtcatttaaccattgatcatccattttgttacatagttgactctgcaca 525  Q
    |||||| | |||||||||||||||||||||||||||||||||||||| |||| ||||    
T  1112115 acaagacaatcatttaaccattgatcatccattttgttacatagttggctcttcaca 1112171  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 337 - 406
Target Start/End: Complemental strand, 12605615 - 12605546
Alignment:
Q  337 atggtggaaaagtaatatgtatagtcacatcattgatgttgatgatgagatatggaacatcattgaaaat 406  Q
    |||||||||||| || ||||||||||| ||| || | |||||||||||| ||||  ||||||||||||||    
T  12605615 atggtggaaaaggaagatgtatagtcatatctttaaagttgatgatgagttatgagacatcattgaaaat 12605546  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 319 - 384
Target Start/End: Original strand, 21817158 - 21817223
Alignment:
Q  319 agatactacacaattttcatggtggaaaagtaatatgtatagtcacatcattgatgttgatgatga 384  Q
    |||| |||| ||||||||||| |||||||| || ||||| ||| |||||| |||||||||||||||    
T  21817158 agatgctactcaattttcatgatggaaaagcaagatgtacagttacatcaatgatgttgatgatga 21817223  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 440
Target Start/End: Complemental strand, 26285899 - 26285859
Alignment:
Q  400 tgaaaatcgtttactatccagttgttgaaaatgagttaaaa 440  Q
    |||||||||||| ||||||| ||||||||||||||||||||    
T  26285899 tgaaaatcgtttcctatccatttgttgaaaatgagttaaaa 26285859  T

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Target: scaffold0040 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 332 - 382
Target Start/End: Original strand, 8844 - 8894
Alignment:
Q  332 ttttcatggtggaaaagtaatatgtatagtcacatcattgatgttgatgat 382  Q
    |||||||| ||||| ||||| ||||||||||||||||| || |||||||||    
T  8844 ttttcatgatggaagagtaagatgtatagtcacatcatagaagttgatgat 8894  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Original strand, 44873313 - 44873354
Alignment:
Q  400 tgaaaatcgtttactatccagttgttgaaaatgagttaaaat 441  Q
    |||||||||| | ||||||| |||||||||||||||||||||    
T  44873313 tgaaaatcgtcttctatccatttgttgaaaatgagttaaaat 44873354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 477 - 525
Target Start/End: Original strand, 29866289 - 29866337
Alignment:
Q  477 gtcatttaaccattgatcatccattttgttacatagttgactctgcaca 525  Q
    |||||||| |||||||||| |||||||||||||||| | ||||| ||||    
T  29866289 gtcatttagccattgatcacccattttgttacataggttactcttcaca 29866337  T

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