View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7063_low_10 (Length: 250)
Name: NF7063_low_10
Description: NF7063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7063_low_10 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 29823072 - 29823309
Alignment:
| Q |
13 |
aatatcaaacaagataacacaaactcaatatcataatcaaaaaccaaatcacacacaaagcaacaagcaactcagaaaaagaaaatcatactacatccat |
112 |
Q |
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| T |
29823072 |
aatatcaaacaagataacacaaactcaatatcataatcaaaaaccaaatcacacacaaagcaacaagcaactcagaaaaagaaaatcatactccatccat |
29823171 |
T |
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| Q |
113 |
tatgcacacttatgaaaatatagaatgtactaatttctaccgaagaattatcttcatttacatttacttaagcaccattgttaagtaatagtcagaggag |
212 |
Q |
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| T |
29823172 |
tatgcacacttatgaaaatatagaatgtactaatttctacggaagaattatcttcatttacatttacttaagcaccattgttaagtaatagtcagaggag |
29823271 |
T |
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| Q |
213 |
tagctaggtgagttgaattgcaataaataagaatatga |
250 |
Q |
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| T |
29823272 |
tagctaggtgagttgagttgcaataaataagaatatga |
29823309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 1838662 - 1838561
Alignment:
| Q |
13 |
aatatcaaacaagataa-cacaaactcaatatcataatcaaaaaccaaatcacacacaaagcaacaagcaactcagaaaaagaaaatcatactacatcca |
111 |
Q |
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||||||||||||||||| | ||||||||||||||||||||||| |||||||||| | ||||||||||| ||||||| ||||||||||| |||||| |
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| T |
1838662 |
aatatcaaacaagataaactcaaactcaatatcataatcaaaa-ccaaatcacatataaagcaacaagaaactcag------aaaatcatactccatcca |
1838570 |
T |
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| Q |
112 |
ttatgcaca |
120 |
Q |
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| T |
1838569 |
ttatgcaca |
1838561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 1838554 - 1838496
Alignment:
| Q |
192 |
gttaagtaatagtcagaggagtagctaggtgagttgaattgcaataaataagaatatga |
250 |
Q |
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| T |
1838554 |
gttaagtaatagtcaaaggagtagttaggtgagttgagttgcaataaataaggatatga |
1838496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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