View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7063_low_11 (Length: 243)
Name: NF7063_low_11
Description: NF7063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7063_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 32093486 - 32093709
Alignment:
| Q |
16 |
atgaagaacaagaagaaaatattttttatggaactcacctcctcttagatattgacaatgtaactcaaagccttttagacctgcaggaatgaatacatga |
115 |
Q |
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| T |
32093486 |
atgaagaacaagaagaaaatattttttatggaactcacctcctcttagatattgacaatgtaactcaaagccttttagacctgcaggaataaatacatga |
32093585 |
T |
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| Q |
116 |
cacaaaatctataagaaatggatttcacacacatacatatttacaaagggaaaacaaatataaa----aatgtatttaccaactttggaattttcattaa |
211 |
Q |
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| T |
32093586 |
cacaaaatctataaggaatggatttcacacacatacatatttacaaagggaaaacaaatataaaaattaatgtatttaccaactttggaattttcattaa |
32093685 |
T |
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| Q |
212 |
gagtaacaagaaggaaacttttac |
235 |
Q |
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|||||| ||||||||||||||||| |
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| T |
32093686 |
gagtaataagaaggaaacttttac |
32093709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 32107648 - 32107817
Alignment:
| Q |
19 |
aagaacaagaagaaaatattt-tttatggaactcacctcctcttagatattgacaatgtaactcaaagccttttagacctgcaggaatgaatacatgaca |
117 |
Q |
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| T |
32107648 |
aagaagaagaagaaaatgttaatttatggaactcacctcctcttagattttcacaatgcaacttaaa-ctttttagacctgcaggactgaatacatgaca |
32107746 |
T |
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| Q |
118 |
caaaatctataagaaatggatttcacacacatacatatttacaaagggaaaacaaatataaaaatgtattt |
188 |
Q |
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| T |
32107747 |
caaaatgtataagaaatggaattcacacacatatatatttacatagagaaaacaaatataaaaatgtattt |
32107817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 32077505 - 32077619
Alignment:
| Q |
18 |
gaagaacaagaagaaaatattt-tttatggaactcacctcctcttagatattgacaatgtaactcaaagccttttagacctgcaggaatgaatacatgac |
116 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||||||||| || ||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
32077505 |
gaagaagaagaagaaaatattaatttatggaactcacctcctcttagattttcacaatgtaacttaaa-ccttttagacctgcaggaatgaatacatgac |
32077603 |
T |
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| Q |
117 |
acaaaatctataagaa |
132 |
Q |
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||||||| |||||||| |
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| T |
32077604 |
acaaaatgtataagaa |
32077619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 198
Target Start/End: Original strand, 32122402 - 32122492
Alignment:
| Q |
107 |
aatacatgacacaaaatctataagaaatggatttcacacacatacatatttacaaagggaaaacaaatataaaaatgtatttaccaactttg |
198 |
Q |
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||||||||| | ||||||||| |||||||| ||||| ||||| ||||||||| ||||||| | ||| ||| |||||||||||||||||| |
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| T |
32122402 |
aatacatgaaataaaatctatttgaaatggaattcac-cacatccatatttacggtgggaaaaaagatagaaacatgtatttaccaactttg |
32122492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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