View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7063_low_3 (Length: 449)
Name: NF7063_low_3
Description: NF7063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7063_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 12 - 441
Target Start/End: Complemental strand, 21434969 - 21434540
Alignment:
| Q |
12 |
tatagatttgaagcaaaaggcatgcgcaagatcaaacgagcgattcaatacttgagcttctgccattgttgcatcttccgttcctttggttttccaattt |
111 |
Q |
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| T |
21434969 |
tatagatttgaagcaaaaggcatgcgcaagatcaaacgagcgattcaatacttgagcttctgccattgttgcatcttccgttcctttggttttccaattt |
21434870 |
T |
|
| Q |
112 |
tccgcagcaaccacatttctacttgcaaccctaatatcactgtactaagaccccagtgaccttccatgtgaaggtttgcatcacaatttgccttatagaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21434869 |
tccgcagcaaccacatttctacttgcaaccctaatatcactgtactaagaccccagtgaccttccatgtgaaggtttgcatcacaatttgccttatagaa |
21434770 |
T |
|
| Q |
212 |
attgaggagcaaccctttagatttttgcttgttattgtctcttatctcaaaaatttccctttcacgttacttgatcatcttcattttgattcatcaaagg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21434769 |
attgaggagcaaccctttagatttttgcttgttattgtctcttatctcaaaaatttccctttcacgttacttgatcatcttcattttgattcatcaaagg |
21434670 |
T |
|
| Q |
312 |
gggtagcacttgggtattgttcagacaacagttttcaacataaaaaatatccctaatctataggatttttatttcccaaggttttcatgttaggacttga |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
21434669 |
gggtagcacttgggtattgttcagacaacagttttcaacataaaaaatatccctaatctatatgatttttatttcccaaggttttcatgttaggacttga |
21434570 |
T |
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| Q |
412 |
aaccaattatcttttctgatattgatgtcc |
441 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
21434569 |
aaccaattatcttttctgatattgatgtcc |
21434540 |
T |
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