View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7063_low_4 (Length: 445)

Name: NF7063_low_4
Description: NF7063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7063_low_4
NF7063_low_4
[»] chr6 (4 HSPs)
chr6 (1-428)||(32093994-32094421)
chr6 (42-160)||(8999896-9000017)
chr6 (42-160)||(9009061-9009182)
chr6 (197-306)||(19112679-19112788)
[»] chr1 (4 HSPs)
chr1 (42-159)||(18960256-18960376)
chr1 (42-160)||(24821871-24821992)
chr1 (42-160)||(21756258-21756379)
chr1 (196-398)||(23267107-23267309)
[»] chr7 (2 HSPs)
chr7 (34-160)||(13934616-13934745)
chr7 (42-160)||(611782-611903)
[»] chr5 (1 HSPs)
chr5 (42-160)||(723313-723434)
[»] chr4 (3 HSPs)
chr4 (42-160)||(117199-117320)
chr4 (42-160)||(14912447-14912568)
chr4 (196-319)||(48210544-48210667)
[»] chr2 (2 HSPs)
chr2 (42-160)||(24996199-24996320)
chr2 (197-306)||(33347017-33347126)
[»] scaffold0354 (1 HSPs)
scaffold0354 (197-318)||(581-702)
[»] chr8 (1 HSPs)
chr8 (197-306)||(26384256-26384365)
[»] scaffold0028 (1 HSPs)
scaffold0028 (42-140)||(86787-86888)
[»] chr3 (2 HSPs)
chr3 (42-160)||(19689847-19689968)
chr3 (3-40)||(19687510-19687547)


Alignment Details
Target: chr6 (Bit Score: 359; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 32093994 - 32094421
Alignment:
Q  1 ttggtaataatgaaaaatctcaaattaaaggtatatgtgtcagatttcaaactgcgccaaaagaatctcactacat---agttaaaagaattttgagata 97  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||   |||||||||||||||||||||    
T  32093994 ttggtaataatgaaaaatctcagattaaaggtatatgtgtcagatttcaaactgcaccaaaagaatctcactacattgcagttaaaagaattttgagata 32094093  T
Q  98 ccttgtaggcacaacaattgtcggtttatggtataaaaagggatcacacttcaatcttatggcctactgcacccgcattgccagtggctctttgctcttt 197  Q
    || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  32094094 ccgtgtaggcacaacaagtgtcggtttatggtataaaaagggatcacacttcaatcttatggcctactgcacctgcattgcgagtggctctttgctcttt 32094193  T
Q  198 gttaattcaagaagatgctttttggagacaaagagcaaaaacccactggcttcgggacggtgatctcaataccaagttcttccatgttgcggcgtcatca 297  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32094194 gttaattcaagaagatgctttttggagacagagagcaaaaacccactggcttcgggacggtgatctcaataccaagttcttccatgttgcggcgtcatca 32094293  T
Q  298 agaagaaaagtgaacataattacatctttgatagatagcaacaatattctagtcacagatgaagaaaaacttagtgttgtggccaaagattatttttcta 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||   ||||||||| |||||| |||||||||    
T  32094294 agaagaaaagtgaacataattacatctttgatagatagcaacaatattctagtcaaagatgaagaaaaact---tgttgtggcgaaagataatttttcta 32094390  T
Q  398 atttactatagccgcaaataagtgacacaac 428  Q
    ||||| |||||||||||||||||||||||||    
T  32094391 atttattatagccgcaaataagtgacacaac 32094421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 42 - 160
Target Start/End: Original strand, 8999896 - 9000017
Alignment:
Q  42 agatttcaaactgcgccaaaagaatctcactacat---agttaaaagaattttgagataccttgtaggcacaacaattgtcggtttatggtataaaaagg 138  Q
    |||||||||||||| |||||||| || |||||||    ||||||||||||||| |||||||||||||||||  ||| ||||||| |||||||||||||||    
T  8999896 agatttcaaactgctccaaaagagtcacactacaccgcagttaaaagaattttcagataccttgtaggcactccaagtgtcggtctatggtataaaaagg 8999995  T
Q  139 gatcacacttcaatcttatggc 160  Q
    || |||| ||  ||||||||||    
T  8999996 gaacacattttgatcttatggc 9000017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 42 - 160
Target Start/End: Original strand, 9009061 - 9009182
Alignment:
Q  42 agatttcaaactgcgccaaaagaatctcactacat---agttaaaagaattttgagataccttgtaggcacaacaattgtcggtttatggtataaaaagg 138  Q
    |||||||||||||| |||||||| || ||||||||   ||||||||||||||| |||||||||||||| ||  ||| ||| ||| ||||||| |||||||    
T  9009061 agatttcaaactgcaccaaaagagtcacactacatcgcagttaaaagaattttcagataccttgtaggaactccaagtgttggtctatggtacaaaaagg 9009160  T
Q  139 gatcacacttcaatcttatggc 160  Q
    || |||| ||  ||||||||||    
T  9009161 gaacacattttgatcttatggc 9009182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 306
Target Start/End: Complemental strand, 19112788 - 19112679
Alignment:
Q  197 tgttaattcaagaagatgctttttggagacaaagagcaaaaacccactggcttcgggacggtgatctcaataccaagttcttccatgttgcggcgtcatc 296  Q
    ||||| ||||||| |||||||||||| | |||||||| || || |||||| | ||||| || || || ||||| ||||||||||||| |||||| || ||    
T  19112788 tgttatttcaagaggatgctttttggcgtcaaagagcgaagactcactggttacgggatggagaccttaatactaagttcttccatgctgcggcttcttc 19112689  T
Q  297 aagaagaaaa 306  Q
    |||| |||||    
T  19112688 aagacgaaaa 19112679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 42 - 159
Target Start/End: Original strand, 18960256 - 18960376
Alignment:
Q  42 agatttcaaactgcgccaaaagaatctcactacat---agttaaaagaattttgagataccttgtaggcacaacaattgtcggtttatggtataaaaagg 138  Q
    |||||||||||||| |||||||| |||||||||||   ||||||||||||||| |||||||||||||||||  ||| ||||||| |||||||||||||||    
T  18960256 agatttcaaactgcaccaaaagagtctcactacattgcagttaaaagaattttcagataccttgtaggcactccaagtgtcggtctatggtataaaaagg 18960355  T
Q  139 gatcacacttcaatcttatgg 159  Q
    || ||| |||  |||||||||    
T  18960356 gaacacgctttgatcttatgg 18960376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 42 - 160
Target Start/End: Complemental strand, 24821992 - 24821871
Alignment:
Q  42 agatttcaaactgcgccaaaagaatctcactacat---agttaaaagaattttgagataccttgtaggcacaacaattgtcggtttatggtataaaaagg 138  Q
    |||||||||||||| |||||||| || |||||||    ||||||||||||||| |||||||||||||||||  ||| ||||||| |||||||||||||||    
T  24821992 agatttcaaactgctccaaaagagtcacactacaccgcagttaaaagaattttcagataccttgtaggcactccaagtgtcggtctatggtataaaaagg 24821893  T
Q  139 gatcacacttcaatcttatggc 160  Q
    || |||| ||  ||||||||||    
T  24821892 gaacacattttgatcttatggc 24821871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 42 - 160
Target Start/End: Original strand, 21756258 - 21756379
Alignment:
Q  42 agatttcaaactgcgccaaaagaatctcactacat---agttaaaagaattttgagataccttgtaggcacaacaattgtcggtttatggtataaaaagg 138  Q
    |||||||||||||| |||||||| || || | |||   ||||||||||||||| |||||||||||||||||  ||| ||| ||  |||||||||||||||    
T  21756258 agatttcaaactgcaccaaaagagtcacattgcattgcagttaaaagaattttcagataccttgtaggcactccaagtgtaggcctatggtataaaaagg 21756357  T
Q  139 gatcacacttcaatcttatggc 160  Q
    || |||||||  ||||||||||    
T  21756358 gaacacactttgatcttatggc 21756379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 398
Target Start/End: Complemental strand, 23267309 - 23267107
Alignment:
Q  196 ttgttaattcaagaagatgctttttggagacaaagagcaaaaacccactggcttcgggacggtgatctcaataccaagttcttccatgttgcggcgtcat 295  Q
    |||||||| || |||||||| || ||| |||||||||| ||||| || ||| | ||| | || || || || |||||||| || ||||||||||| || |    
T  23267309 ttgttaatccaggaagatgccttctggtgacaaagagctaaaactcattggttgcggaatggcgaccttaacaccaagttatttcatgttgcggcatctt 23267210  T
Q  296 caagaagaaaagtgaacataattacatctttgatagatagcaacaatattctagtcacagatgaagaaaaacttagtgttgtggccaaagattatttttc 395  Q
    |||||||||| ||||| | ||| || || ||| | |||  | | ||||||| ||| ||||| |||||||| ||| ||| |||||| ||| | |||||| |    
T  23267209 caagaagaaaggtgaatagaatcacgtccttgttggatgacgataatattcgagtgacagaggaagaaaagctttgtgatgtggcaaaaaaatattttac 23267110  T
Q  396 taa 398  Q
    |||    
T  23267109 taa 23267107  T

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Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 34 - 160
Target Start/End: Original strand, 13934616 - 13934745
Alignment:
Q  34 tatgtgtcagatttcaaactgcgccaaaagaatctcactacat---agttaaaagaattttgagataccttgtaggcacaacaattgtcggtttatggta 130  Q
    |||||| || |||||||||||| |||||||| ||  |||||||   ||||||||||||||| |||||||||||||| ||  ||| |||||||||||||||    
T  13934616 tatgtgccaaatttcaaactgcaccaaaagagtcatactacattgcagttaaaagaattttcagataccttgtagggactccaagtgtcggtttatggta 13934715  T
Q  131 taaaaagggatcacacttcaatcttatggc 160  Q
    |||||||||| |||||||  ||||||||||    
T  13934716 taaaaagggaacacacttttatcttatggc 13934745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 42 - 160
Target Start/End: Original strand, 611782 - 611903
Alignment:
Q  42 agatttcaaactgcgccaaaagaatctcactacat---agttaaaagaattttgagataccttgtaggcacaacaattgtcggtttatggtataaaaagg 138  Q
    |||||||||||||| |||||||| || |||||||    ||||||||||||||| |||||||||||||||||  ||| ||||||| |||||||||||||||    
T  611782 agatttcaaactgctccaaaagagtcacactacaccgcagttaaaagaattttcagataccttgtaggcactccaagtgtcggtctatggtataaaaagg 611881  T
Q  139 gatcacacttcaatcttatggc 160  Q
    || |||| ||  ||||||||||    
T  611882 gaacacattttgatcttatggc 611903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 42 - 160
Target Start/End: Complemental strand, 723434 - 723313
Alignment:
Q  42 agatttcaaactgcgccaaaagaatctcactacat---agttaaaagaattttgagataccttgtaggcacaacaattgtcggtttatggtataaaaagg 138  Q
    |||||||||||||| |||||||| || |||||||    ||||||||||||||| |||||||||||||||||  ||| ||||||| |||||||||||||||    
T  723434 agatttcaaactgctccaaaagagtcacactacaccgcagttaaaagaattttcagataccttgtaggcactccaagtgtcggtctatggtataaaaagg 723335  T
Q  139 gatcacacttcaatcttatggc 160  Q
    || |||| ||  ||||||||||    
T  723334 gaacacattttgatcttatggc 723313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 42 - 160
Target Start/End: Original strand, 117199 - 117320
Alignment:
Q  42 agatttcaaactgcgccaaaagaatctcactacat---agttaaaagaattttgagataccttgtaggcacaacaattgtcggtttatggtataaaaagg 138  Q
    |||||||||||||| |||||||| || |||||||    ||||||||||||||| |||||||||||||||||  ||| ||||||| |||||||||||||||    
T  117199 agatttcaaactgctccaaaagagtcacactacaccgcagttaaaagaattttcagataccttgtaggcactccaagtgtcggtctatggtataaaaagg 117298  T
Q  139 gatcacacttcaatcttatggc 160  Q
    || |||| ||  ||||||||||    
T  117299 gaacacattttgatcttatggc 117320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 42 - 160
Target Start/End: Original strand, 14912447 - 14912568
Alignment:
Q  42 agatttcaaactgcgccaaaagaatctcactacat---agttaaaagaattttgagataccttgtaggcacaacaattgtcggtttatggtataaaaagg 138  Q
    |||||||||||||| |||||||| || ||||||||   ||||||||||||||| |||||||||||||| ||  ||| ||| ||| |||||||||||||||    
T  14912447 agatttcaaactgcaccaaaagagtcacactacatcgcagttaaaagaattttcagataccttgtaggaactccaagtgttggtctatggtataaaaagg 14912546  T
Q  139 gatcacacttcaatcttatggc 160  Q
    || |||| || |||||||||||    
T  14912547 gaacacattttaatcttatggc 14912568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 319
Target Start/End: Original strand, 48210544 - 48210667
Alignment:
Q  196 ttgttaattcaagaagatgctttttggagacaaagagcaaaaacccactggcttcgggacggtgatctcaataccaagttcttccatgttgcggcgtcat 295  Q
    ||||| || ||||||||||||||||||||||| || || ||||| || ||||| || || |||||||| || |||||||| ||||| | ||| ||  | |    
T  48210544 ttgttgatccaagaagatgctttttggagacagagggcgaaaacacattggctacgtgatggtgatcttaacaccaagtttttccacgctgccgcaactt 48210643  T
Q  296 caagaagaaaagtgaacataatta 319  Q
    |||||| ||| ||||||| |||||    
T  48210644 caagaaaaaaggtgaacaaaatta 48210667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 42 - 160
Target Start/End: Original strand, 24996199 - 24996320
Alignment:
Q  42 agatttcaaactgcgccaaaagaatctcactacatag---ttaaaagaattttgagataccttgtaggcacaacaattgtcggtttatggtataaaaagg 138  Q
    |||||||||||||| |||||||| || || ||||| |   |||||||||||||||||||||||||||| ||  ||| ||| ||| |||||||||||||||    
T  24996199 agatttcaaactgcaccaaaagagtcacattacatcgcaattaaaagaattttgagataccttgtaggaactccaagtgttggtctatggtataaaaagg 24996298  T
Q  139 gatcacacttcaatcttatggc 160  Q
    || |||| ||  ||||||||||    
T  24996299 gaacacattttgatcttatggc 24996320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 306
Target Start/End: Original strand, 33347017 - 33347126
Alignment:
Q  197 tgttaattcaagaagatgctttttggagacaaagagcaaaaacccactggcttcgggacggtgatctcaataccaagttcttccatgttgcggcgtcatc 296  Q
    ||||||||||||| |||||||||||| | ||||||||||| || || ||| | ||||| || || || ||||| ||||||||||||| |||||| || ||    
T  33347017 tgttaattcaagaggatgctttttggcgtcaaagagcaaagactcaatggttacgggatggagaccttaatactaagttcttccatgctgcggcttcttc 33347116  T
Q  297 aagaagaaaa 306  Q
    |||| |||||    
T  33347117 aagacgaaaa 33347126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0354 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 318
Target Start/End: Complemental strand, 702 - 581
Alignment:
Q  197 tgttaattcaagaagatgctttttggagacaaagagcaaaaacccactggcttcgggacggtgatctcaataccaagttcttccatgttgcggcgtcatc 296  Q
    ||||| ||||||| |||||||||||| | |||||||| || || |||||| | ||||| || || || ||||| ||||||||||||| |||||| || ||    
T  702 tgttagttcaagaggatgctttttggcgtcaaagagcgaagactcactggttacgggatggagaccttaatactaagttcttccatgctgcggcttcttc 603  T
Q  297 aagaagaaaagtgaacataatt 318  Q
    |||| ||||||| |||| ||||    
T  602 aagacgaaaagttaacaaaatt 581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 306
Target Start/End: Complemental strand, 26384365 - 26384256
Alignment:
Q  197 tgttaattcaagaagatgctttttggagacaaagagcaaaaacccactggcttcgggacggtgatctcaataccaagttcttccatgttgcggcgtcatc 296  Q
    ||||||||||||| |||||||||||| | |||||||| || || |||||| | ||||| || || || ||||| ||||||||||||| |||||| || ||    
T  26384365 tgttaattcaagaggatgctttttggcgtcaaagagcgaagactcactggttacgggatggagaccttaatacgaagttcttccatgctgcggcttcttc 26384266  T
Q  297 aagaagaaaa 306  Q
    |||| |||||    
T  26384265 aagacgaaaa 26384256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 140
Target Start/End: Original strand, 86787 - 86888
Alignment:
Q  42 agatttcaaactgcgccaaaagaatctcactacat---agttaaaagaattttgagataccttgtaggcacaacaattgtcggtttatggtataaaaagg 138  Q
    |||||||||||||| |||||||| || ||||||||   ||||||||||||||| |||||| ||||| | ||  ||| ||| ||| |||||||||||||||    
T  86787 agatttcaaactgcaccaaaagagtcacactacatcgcagttaaaagaattttcagatacgttgtaagaactccaagtgttggtctatggtataaaaagg 86886  T
Q  139 ga 140  Q
    ||    
T  86887 ga 86888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 160
Target Start/End: Original strand, 19689847 - 19689968
Alignment:
Q  42 agatttcaaactgcgccaaaagaatctcactacat---agttaaaagaattttgagataccttgtaggcacaacaattgtcggtttatggtataaaaagg 138  Q
    |||||||||||| | |||||||| || ||||||||   ||||||||||||||| ||||| |||||||| ||  ||| ||| | | |||||||||||||||    
T  19689847 agatttcaaactacaccaaaagagtcacactacatcgcagttaaaagaattttcagatatcttgtaggaactccaagtgttgatctatggtataaaaagg 19689946  T
Q  139 gatcacacttcaatcttatggc 160  Q
    || |||| ||  ||||||||||    
T  19689947 gagcacattttgatcttatggc 19689968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 19687510 - 19687547
Alignment:
Q  3 ggtaataatgaaaaatctcaaattaaaggtatatgtgt 40  Q
    ||||||||||||||||||| ||||||||||||| ||||    
T  19687510 ggtaataatgaaaaatctcgaattaaaggtataggtgt 19687547  T

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