View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7063_low_8 (Length: 275)
Name: NF7063_low_8
Description: NF7063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7063_low_8 |
 | |
|
| [»] scaffold0257 (1 HSPs) |
| | |
|
| [»] scaffold0043 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0257 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 12 - 257
Target Start/End: Complemental strand, 17734 - 17489
Alignment:
| Q |
12 |
tggtgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggt |
111 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
17734 |
tggtgttgatgctgaagccagagatagtttttgacaattctgtatgaaacggtattttacagcttgaaattgaattccctgggcatgactgagtcttggt |
17635 |
T |
|
| Q |
112 |
agattttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatca |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17634 |
agattttcaaatactacaaattttagatttggaatctccattttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatca |
17535 |
T |
|
| Q |
212 |
ctagacactttagctcaggaaactctttacatatggagattggaaa |
257 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17534 |
ctagacactttagctcaggaagctctttacatatggagattggaaa |
17489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 29)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 30 - 257
Target Start/End: Complemental strand, 28184154 - 28183927
Alignment:
| Q |
30 |
cagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtagattttcaaatactaca |
129 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28184154 |
cagagagagtttttgacaattccgtatgaaacgattttttacagcttgaaattgaattctctgggcatgactgaggcttggtagattttcaaatactaca |
28184055 |
T |
|
| Q |
130 |
aattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatcactagacactttagctcag |
229 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
28184054 |
cattctagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctccagctcatctgcttctcttatcatcagaacatttagctcag |
28183955 |
T |
|
| Q |
230 |
gaaactctttacatatggagattggaaa |
257 |
Q |
| |
|
||| |||||||||||||||||||||||| |
|
|
| T |
28183954 |
gaagctctttacatatggagattggaaa |
28183927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 28053878 - 28053676
Alignment:
| Q |
14 |
gtgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtag |
113 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
28053878 |
gtgttgatgctgaagtcagagatagtttttgacaattcagtatgaaacgatgttttacagcttgaaattgaattccctggtcatgactgaggcttggtag |
28053779 |
T |
|
| Q |
114 |
attttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatcact |
213 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28053778 |
attttcaaatactacaagttttagatttggaatctccactttgtgatcatcactttcacttacaaatatttcctctagctcatctgcttctcttatcact |
28053679 |
T |
|
| Q |
214 |
aga |
216 |
Q |
| |
|
||| |
|
|
| T |
28053678 |
aga |
28053676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 28064303 - 28064101
Alignment:
| Q |
14 |
gtgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtag |
113 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
28064303 |
gtgttgatgctgaagtcagagatagtttttgacaattcagtatgaaacgatgttttacagcttgaaattgaattccctggtcatgactgaggcttggtag |
28064204 |
T |
|
| Q |
114 |
attttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatcact |
213 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28064203 |
attttcaaatactacaagttttagatttggaatctccactttgtgatcatcactttcacttacaaatatttcctctagctcatctgcttctcttatcact |
28064104 |
T |
|
| Q |
214 |
aga |
216 |
Q |
| |
|
||| |
|
|
| T |
28064103 |
aga |
28064101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 15 - 257
Target Start/End: Complemental strand, 27918774 - 27918532
Alignment:
| Q |
15 |
tgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtaga |
114 |
Q |
| |
|
|||||||| ||||| |||||||||| ||||||||||| |||||||||| | |||||||| |||||| ||||||||| || ||| |||||||||||||||| |
|
|
| T |
27918774 |
tgttgatgatgaagccagagatagtgtttgacaattctgtatgaaacgatgttttacagtttgaaaatgaattccctggacatcactgaggcttggtaga |
27918675 |
T |
|
| Q |
115 |
ttttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatcacta |
214 |
Q |
| |
|
||||||||||||| | ||| ||||||||||||||||||||| ||||||||||||||| ||||| ||||||| || ||||||||||||||||||||||||| |
|
|
| T |
27918674 |
ttttcaaatactagatattctagatttggaatctccactttctgatcatcaccttcatttgcaaatatttcatccagctcatctgcttctcttatcacta |
27918575 |
T |
|
| Q |
215 |
gacactttagctcaggaaactctttacatatggagattggaaa |
257 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27918574 |
gacactttagctcaggaaggtctttacatatggagattggaaa |
27918532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 30 - 258
Target Start/End: Complemental strand, 28159590 - 28159362
Alignment:
| Q |
30 |
cagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtagattttcaaatactaca |
129 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28159590 |
cagagagagtttttgacaattccgtatgaaacgattttttacagcttgaaattgaattctctgggcatgactgaggattggtagattttcaaatactaca |
28159491 |
T |
|
| Q |
130 |
aattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatcactagacactttagctcag |
229 |
Q |
| |
|
||| |||||||||||||| |||||| ||||||||||||||| || || ||||||||||||||||||||| ||||||||||| ||| |||||||||| |
|
|
| T |
28159490 |
cattctagatttggaatcttcactttctgatcatcaccttcaattacaaatatttcctctagctcatctgattctcttatcatcagaacatttagctcag |
28159391 |
T |
|
| Q |
230 |
gaaactctttacatatggagattggaaat |
258 |
Q |
| |
|
||| ||||||||||||||||||||||||| |
|
|
| T |
28159390 |
gaagctctttacatatggagattggaaat |
28159362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 15 - 257
Target Start/End: Complemental strand, 28002580 - 28002338
Alignment:
| Q |
15 |
tgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtaga |
114 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||||| ||| | ||||||||||| ||||||||||||| | |||||| ||||||| ||||| |
|
|
| T |
28002580 |
tgttgatgctgaagtcagagatagtttttgacaattcagtatgagacgatgttttacagcttcaaattgaattccctgatcatgacagaggcttcgtaga |
28002481 |
T |
|
| Q |
115 |
ttttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatcacta |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||| ||| |||||||||||||| | |
|
|
| T |
28002480 |
ttttcaaatactacaaattttagatttggaatctcgactttgtgatcatcaccttcacttccaaatatttcctctacctcgtctgcttctcttatggtca |
28002381 |
T |
|
| Q |
215 |
gacactttagctcaggaaactctttacatatggagattggaaa |
257 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
28002380 |
gaacatttagctcaggaagctctttacatatggagattggaaa |
28002338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 12 - 257
Target Start/End: Complemental strand, 28148139 - 28147894
Alignment:
| Q |
12 |
tggtgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggt |
111 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||| |||||||||| | ||||||| ||||||||||||||||| | |||||| |||||||||| |
|
|
| T |
28148139 |
tggtgttgactctgaagccagagatagtttttgacaattcagtatgaaacgatgttttacaacttgaaattgaattccctgagcatgatagaggcttggt |
28148040 |
T |
|
| Q |
112 |
agattttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatca |
211 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||| || |||||||||||| |||||||||||||||||| | |
|
|
| T |
28148039 |
agattttcaaatattacaagttttagatttggaatctccactttgtgatcatcaaattcacttacaaatatttcctctaactcatctgcttctcttatga |
28147940 |
T |
|
| Q |
212 |
ctagacactttagctcaggaaactctttacatatggagattggaaa |
257 |
Q |
| |
|
||| |||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
28147939 |
tcagaacctttagctcaggaagctctttagatatggagattggaaa |
28147894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 21 - 257
Target Start/End: Complemental strand, 28132346 - 28132110
Alignment:
| Q |
21 |
tgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtagattttca |
120 |
Q |
| |
|
|||||||| |||||| ||||||||||||||| |||||||||| | ||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
28132346 |
tgctgaagtcagagagagtttttgacaattctgtatgaaacgatgttttacatcttgaaattgaattccctgggcatgattgaggcttggtagattttca |
28132247 |
T |
|
| Q |
121 |
aatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatcactagacact |
220 |
Q |
| |
|
|||| ||||| ||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||| |||||||||||||| | ||| | | |
|
|
| T |
28132246 |
aatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctaactcgtctgcttctcttatgatcagataat |
28132147 |
T |
|
| Q |
221 |
ttagctcaggaaactctttacatatggagattggaaa |
257 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
28132146 |
atagctcaggaagctctttacatacggagattggaaa |
28132110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 21 - 257
Target Start/End: Complemental strand, 28082139 - 28081903
Alignment:
| Q |
21 |
tgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtagattttca |
120 |
Q |
| |
|
|||||||| |||||| ||||||||||||||| |||||||||| ||| ||||||||| |||||||||||| ||||||||| ||||||||| ||||||||| |
|
|
| T |
28082139 |
tgctgaagccagagagagtttttgacaattctgtatgaaacgatatgttacagcttcaaattgaattccttgggcatgacagaggcttggaagattttca |
28082040 |
T |
|
| Q |
121 |
aatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatcactagacact |
220 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||||||||||| ||| || |||||||||||| |||||||||||||||||| | ||| | | |
|
|
| T |
28082039 |
aatactacaaatcgtagatatggaatctccactttgtgatcatcaccttcgcttacaaatatttcctctaactcatctgcttctcttatgatcagataat |
28081940 |
T |
|
| Q |
221 |
ttagctcaggaaactctttacatatggagattggaaa |
257 |
Q |
| |
|
|||||||||||| ||||||| ||| |||||||||||| |
|
|
| T |
28081939 |
ttagctcaggaagctctttatatacggagattggaaa |
28081903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 21 - 257
Target Start/End: Original strand, 28481358 - 28481594
Alignment:
| Q |
21 |
tgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtagattttca |
120 |
Q |
| |
|
|||||||| |||||| ||||||||||||||| |||||||||| | ||||||||||||||||||||||||| | |||||| ||||||||||||||||||| |
|
|
| T |
28481358 |
tgctgaagccagagagagtttttgacaattcagtatgaaacgatgttttacagcttgaaattgaattccctgatcatgacagaggcttggtagattttca |
28481457 |
T |
|
| Q |
121 |
aatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatcactagacact |
220 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||| | ||| |||||||||||||| | ||| | |
|
|
| T |
28481458 |
aatactacaaattttagatttggaatctcgactttgtgatcatcaccttcacttccaaatatttcctcgaactcgtctgcttctcttatgatgagaacat |
28481557 |
T |
|
| Q |
221 |
ttagctcaggaaactctttacatatggagattggaaa |
257 |
Q |
| |
|
|||||| |||| ||||||| |||||||||||||||| |
|
|
| T |
28481558 |
ttagctttggaagctctttagatatggagattggaaa |
28481594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 21 - 257
Target Start/End: Original strand, 28510530 - 28510766
Alignment:
| Q |
21 |
tgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtagattttca |
120 |
Q |
| |
|
|||||||| |||||| ||||||||||||||| ||| ||||| | ||||||||||||||||||||||||| | |||||| ||||||||||||||||||| |
|
|
| T |
28510530 |
tgctgaagccagagagagtttttgacaattcattattaaacgatgttttacagcttgaaattgaattccctgagcatgatagaggcttggtagattttca |
28510629 |
T |
|
| Q |
121 |
aatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatcactagacact |
220 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||| | ||| |
|
|
| T |
28510630 |
aatattacaagttttagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctaactcatctgcttctcttatgatcagaacaa |
28510729 |
T |
|
| Q |
221 |
ttagctcaggaaactctttacatatggagattggaaa |
257 |
Q |
| |
|
||||||| |||| ||||||| |||||||||||||||| |
|
|
| T |
28510730 |
ttagctctggaagctctttagatatggagattggaaa |
28510766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 8 - 257
Target Start/End: Complemental strand, 28035837 - 28035588
Alignment:
| Q |
8 |
agtttggtgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggct |
107 |
Q |
| |
|
|||||| |||||||| ||||| |||||||||| ||||||||||| | |||||||| | |||||||| |||||| ||||||| | || |||||||||| || |
|
|
| T |
28035837 |
agtttgttgttgatgatgaagccagagatagtgtttgacaattctgcatgaaacgttgttttacagtttgaaaatgaattctctggacatgactgagtct |
28035738 |
T |
|
| Q |
108 |
tggtagattttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctctt |
207 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| || | || ||||||||||||| |
|
|
| T |
28035737 |
tggtagattttcaaacactacaaattttagatttggaatctccactttctgatcatcaccttcacttgcaaatatttcttccatcttatctgcttctctt |
28035638 |
T |
|
| Q |
208 |
atcactagacactttagctcaggaaactctttacatatggagattggaaa |
257 |
Q |
| |
|
|||| |||| | || || |||| |||||||||||||||||||||||| |
|
|
| T |
28035637 |
atcattagagcttctaacttgggaagctctttacatatggagattggaaa |
28035588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 15 - 257
Target Start/End: Complemental strand, 27975754 - 27975512
Alignment:
| Q |
15 |
tgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtaga |
114 |
Q |
| |
|
|||||||||| | | ||| || ||||||||||||||| ||||| | | | |||||||||||||||||||||||| || ||||| ||||||||||||| |
|
|
| T |
27975754 |
tgttgatgctaacgccagggagagtttttgacaattctgtatggcatgatgttttacagcttgaaattgaattccttggtcatgatggaggcttggtaga |
27975655 |
T |
|
| Q |
115 |
ttttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatcacta |
214 |
Q |
| |
|
|||||||||| ||||| | | ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||| | |
|
|
| T |
27975654 |
ttttcaaatattacaactatcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcagctgcttctcttatcaaga |
27975555 |
T |
|
| Q |
215 |
gacactttagctcaggaaactctttacatatggagattggaaa |
257 |
Q |
| |
|
|| || ||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
27975554 |
gaacctctagctcaagaagctctttacatatggagattggaaa |
27975512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 17746025 - 17746264
Alignment:
| Q |
15 |
tgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtaga |
114 |
Q |
| |
|
||||| |||||||| |||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||| | || |||| ||||||||||| |
|
|
| T |
17746025 |
tgttgttgctgaagccagagagagtttttgacaattccgtatgaaacgatgttttacagcttgaaattgaattccttgagcttgacaaaggcttggtagg |
17746124 |
T |
|
| Q |
115 |
ttttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatcacta |
214 |
Q |
| |
|
|| ||||| | |||| ||| || || ||||| | ||||| | |||||||||||||| || |||||||||||||||||| |||||||||||||| || |
|
|
| T |
17746125 |
ttgacaaatgccacaactttcagtttcggaatattgactttct---catcaccttcacttccaaatatttcctctagctcatatgcttctcttatcatta |
17746221 |
T |
|
| Q |
215 |
gacactttagctcaggaaactctttacatatggagattggaaa |
257 |
Q |
| |
|
||| || ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17746222 |
gaccctctagctcaggaagctctttacatatggagattggaaa |
17746264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 19047345 - 19047584
Alignment:
| Q |
15 |
tgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtaga |
114 |
Q |
| |
|
||||| |||||||| |||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||| | || |||| ||||||||||| |
|
|
| T |
19047345 |
tgttgttgctgaagccagagagagtttttgacaattccgtatgaaacgatgttttacagcttgaaattgaattccttgagcttgacaaaggcttggtagg |
19047444 |
T |
|
| Q |
115 |
ttttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatcacta |
214 |
Q |
| |
|
|| ||||| | |||| ||| || || ||||| | ||||| | |||||||||||||| || |||||||||||||||||| |||||||||||||| || |
|
|
| T |
19047445 |
ttgacaaatgccacaactttcagtttcggaatattgactttct---catcaccttcacttccaaatatttcctctagctcatatgcttctcttatcatta |
19047541 |
T |
|
| Q |
215 |
gacactttagctcaggaaactctttacatatggagattggaaa |
257 |
Q |
| |
|
||| || ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19047542 |
gaccctctagctcaggaagctctttacatatggagattggaaa |
19047584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 36 - 257
Target Start/End: Original strand, 27460919 - 27461137
Alignment:
| Q |
36 |
tagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtagattttcaaatactacaaatttt |
135 |
Q |
| |
|
|||||||||||||||| ||| ||| | | |||||||||||| | |||||||||| || |||||| |||||||||||||||| |||||||||||| |||| |
|
|
| T |
27460919 |
tagtttttgacaattctgtaccaaatgatgttttacagcttggagttgaattccctggacatgacagaggcttggtagatttacaaatactacaagtttt |
27461018 |
T |
|
| Q |
136 |
agatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatcactagacactttagctcaggaaact |
235 |
Q |
| |
|
|||||||||||||||| ||| |||||||| ||||||| || |||||||||||||| |||||||||||||| | |||| || ||||||||||| || |
|
|
| T |
27461019 |
agatttggaatctccagtttctgatcatctttttcacttacaaatatttcctctagc---tctgcttctcttatgattagaacctctagctcaggaagct |
27461115 |
T |
|
| Q |
236 |
ctttacatatggagattggaaa |
257 |
Q |
| |
|
||||||||||||| |||||||| |
|
|
| T |
27461116 |
ctttacatatggacattggaaa |
27461137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 15 - 257
Target Start/End: Complemental strand, 11419133 - 11418891
Alignment:
| Q |
15 |
tgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtaga |
114 |
Q |
| |
|
||||| || ||||| |||||| ||||||||||||||| |||||||||| ||||||||||||||| ||||||||| | ||| || | || ||||| ||| |
|
|
| T |
11419133 |
tgttgttgatgaagccagagagagtttttgacaattctgtatgaaacgatattttacagcttgatattgaattctctgggtatcccagaaacttggcaga |
11419034 |
T |
|
| Q |
115 |
ttttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatcacta |
214 |
Q |
| |
|
||||||||||||| |||||| ||||| |||||||| ||| |||| |||| |||||||| || |||||||||||||||||||||| |||||||||| | |
|
|
| T |
11419033 |
ttttcaaatactaaaaatttaagattcggaatctcgcttttctgatgatcatcttcacttacaaatatttcctctagctcatctgcgtctcttatcatca |
11418934 |
T |
|
| Q |
215 |
gacactttagctcaggaaactctttacatatggagattggaaa |
257 |
Q |
| |
|
|| | ||||||||||| ||||||||| | |||||||||||| |
|
|
| T |
11418933 |
gaacatatagctcaggaagctctttacacagggagattggaaa |
11418891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 73 - 257
Target Start/End: Original strand, 27392146 - 27392327
Alignment:
| Q |
73 |
gcttgaaattgaattcccagggcatgactgaggcttggtagattttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcac |
172 |
Q |
| |
|
|||||||| |||||||| ||| || |||||||||||||| || ||||| |||||||||| ||||||||||| | ||||| | ||||| |||| | |
|
|
| T |
27392146 |
gcttgaaaatgaattccttgggtctggctgaggcttggtaggttgacaaatgctacaaatttcagatttggaatattgactttct---catcaacttcgc |
27392242 |
T |
|
| Q |
173 |
ttgcagatatttcctctagctcatctgcttctcttatcactagacactttagctcaggaaactctttacatatggagattggaaa |
257 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||| | ||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27392243 |
atacaaatatttcctctagctcatctgcttctcttatgatcagaacctttagctcaggaagctctttacatatggagattggaaa |
27392327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 106 - 257
Target Start/End: Complemental strand, 12146335 - 12146184
Alignment:
| Q |
106 |
cttggtagattttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctc |
205 |
Q |
| |
|
|||||||| || ||||| ||||||||| || |||||||| | ||||| | |||| | |||||| | || |||||||||||||||||| |||||||| |
|
|
| T |
12146335 |
cttggtaggttgacaaatgctacaaattccagttttggaatattgactttctcatcaccttcttcacatacaaatatttcctctagctcatttgcttctc |
12146236 |
T |
|
| Q |
206 |
ttatcactagacactttagctcaggaaactctttacatatggagattggaaa |
257 |
Q |
| |
|
|||| | |||| ||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
12146235 |
ttataattagaaactgtagctcaggaagctctttacatatggagattggaaa |
12146184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 106 - 257
Target Start/End: Complemental strand, 27376518 - 27376367
Alignment:
| Q |
106 |
cttggtagattttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctc |
205 |
Q |
| |
|
|||||||| || ||||| |||||| |||||||||||| || | ||||| | |||| | |||||| | || ||||||||||||||| ||||| |||| |
|
|
| T |
27376518 |
cttggtaggttgacaaatgctacaagttttagatttggcatattgactttctcatcaccttcttcacatacaaatatttcctctagcttatctgattctt |
27376419 |
T |
|
| Q |
206 |
ttatcactagacactttagctcaggaaactctttacatatggagattggaaa |
257 |
Q |
| |
|
|||||||||||| || ||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
27376418 |
ttatcactagactctctagctcaggaagctcttcacatatggagattggaaa |
27376367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 179 - 257
Target Start/End: Original strand, 26142311 - 26142389
Alignment:
| Q |
179 |
atatttcctctagctcatctgcttctcttatcactagacactttagctcaggaaactctttacatatggagattggaaa |
257 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| | | |||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
26142311 |
atatttcctctagctcatttgcttctcttatcaacacagcctttagcttaggaaactctttacaaatggagattggaaa |
26142389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 179 - 257
Target Start/End: Original strand, 26180616 - 26180694
Alignment:
| Q |
179 |
atatttcctctagctcatctgcttctcttatcactagacactttagctcaggaaactctttacatatggagattggaaa |
257 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| | | |||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
26180616 |
atatttcctctagctcatttgcttctcttatcaacataacctttagctcaggaaactctttacaaatggagactggaaa |
26180694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 257
Target Start/End: Original strand, 26237351 - 26237429
Alignment:
| Q |
179 |
atatttcctctagctcatctgcttctcttatcactagacactttagctcaggaaactctttacatatggagattggaaa |
257 |
Q |
| |
|
|||||||||||| ||||| |||||||||||| | | | |||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
26237351 |
atatttcctctaactcatttgcttctcttatgaacataacctttagctcaggaaactctttacaaatggagactggaaa |
26237429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 257
Target Start/End: Complemental strand, 27347671 - 27347574
Alignment:
| Q |
160 |
tcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatcactagacactttagctcaggaaactctttacatatggagattggaaa |
257 |
Q |
| |
|
|||||||||| || | || |||||||||| | || |||| ||||||||| | |||| || ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27347671 |
tcatcacctttacatacaaatatttcctccaattcttctgattctcttatgattagagcctctagctcaggaagctctttacatatggagattggaaa |
27347574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 257
Target Start/End: Original strand, 18026466 - 18026561
Alignment:
| Q |
162 |
atcaccttcacttgcagatatttcctctagctcatctgcttctcttatcactagacactttagctcaggaaactctttacatatggagattggaaa |
257 |
Q |
| |
|
|||| |||||| | || ||||||||||||||| ||||||||| ||| | || | |||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
18026466 |
atcaacttcacatacaaatatttcctctagcttctctgcttctactatgattataacctttagctcaggaagctctttatatatggagattggaaa |
18026561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 257
Target Start/End: Original strand, 26131579 - 26131657
Alignment:
| Q |
179 |
atatttcctctagctcatctgcttctcttatcactagacactttagctcaggaaactctttacatatggagattggaaa |
257 |
Q |
| |
|
||||| |||||||||||| |||||| ||||||| | | |||||||| ||||||||||||||| ||||||| |||||| |
|
|
| T |
26131579 |
atattccctctagctcatttgcttcacttatcatcataacctttagcttaggaaactctttacaaatggagactggaaa |
26131657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 257
Target Start/End: Original strand, 26210107 - 26210185
Alignment:
| Q |
179 |
atatttcctctagctcatctgcttctcttatcactagacactttagctcaggaaactctttacatatggagattggaaa |
257 |
Q |
| |
|
|||||||||||| ||||| |||||||||||| | | | ||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
26210107 |
atatttcctctaactcatttgcttctcttattatcataacatttagctcaggaaactctttacaaatggagactggaaa |
26210185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 26627896 - 26627671
Alignment:
| Q |
15 |
tgttgatgctgaaggcagagatagtttttgacaattccgtatgaaacggtattttacagcttgaaattgaattcccagggcatgactgaggcttggtaga |
114 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||| ||| ||||| | || |||| | |||||||||||||| | | || | ||||||| |||| |
|
|
| T |
26627896 |
tgttgatgctgaagttagagagagtttttgacaattctgtacaaaacgattttctacatcctgaaattgaattccttgtgtctggcagaggctt-gtagg |
26627798 |
T |
|
| Q |
115 |
ttttcaaatactacaaattttagatttggaatctccactttgtg---atcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatca |
211 |
Q |
| |
|
| ||||| |||| | ||||||||||||||||| ||||| || ||||||| ||||| || ||||||||||||| ||| | ||||||||||||| |
|
|
| T |
26627797 |
tcgacaaatgctaccacatttagatttggaatctcgactttctgatcatcatcatcttcatttttgaatatttcctctagttcaccagcttctcttatca |
26627698 |
T |
|
| Q |
212 |
ctagacactttagctcaggaaactctt |
238 |
Q |
| |
|
||| || ||||||||||| ||||| |
|
|
| T |
26627697 |
tcagaacctctagctcaggaagctctt |
26627671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 257
Target Start/End: Original strand, 26114999 - 26115077
Alignment:
| Q |
179 |
atatttcctctagctcatctgcttctcttatcactagacactttagctcaggaaactctttacatatggagattggaaa |
257 |
Q |
| |
|
||||||| |||| ||||| |||||||||||| | | | |||||||||||||| ||||||||| ||||||| |||||| |
|
|
| T |
26114999 |
atatttcttctaactcatttgcttctcttattatcataacctttagctcaggaagctctttacaaatggagactggaaa |
26115077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 107 - 257
Target Start/End: Complemental strand, 8020071 - 8019921
Alignment:
| Q |
107 |
ttggtagattttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctct |
206 |
Q |
| |
|
|||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||| |
|
|
| T |
8020071 |
ttggtagattttcaaatattacaactttcagatttggaatctccactttgtgatcatcaccttcacttacaaatatttcctctagctcatatgcttctct |
8019972 |
T |
|
| Q |
207 |
tatcactagacactttagctcaggaaactctttacatatggagattggaaa |
257 |
Q |
| |
|
||| | ||| | ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8019971 |
tatgatcagataatttagctcaggaagctctttacatatggagattggaaa |
8019921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 102 - 257
Target Start/End: Complemental strand, 22391444 - 22391289
Alignment:
| Q |
102 |
gaggcttggtagattttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgct |
201 |
Q |
| |
|
|||||||||||| || ||||| ||||| |||||||||||| || | ||||| |||||| | |||||| | || ||||||||||||||| || |||| |
|
|
| T |
22391444 |
gaggcttggtaggttgacaaatgatacaacttttagatttggcatattgactttctgatcaccttcttcacatacaaatatttcctctagcttatatgct |
22391345 |
T |
|
| Q |
202 |
tctcttatcactagacactttagctcaggaaactctttacatatggagattggaaa |
257 |
Q |
| |
|
|| |||||||||||| || ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
22391344 |
tcacttatcactagagcctctagctcaggaagctctttacatatggagattggaaa |
22391289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 82 - 257
Target Start/End: Original strand, 8693252 - 8693427
Alignment:
| Q |
82 |
tgaattcccagggcatgactgaggcttggtagattttcaaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagata |
181 |
Q |
| |
|
|||||||| ||||||||| ||||||||| |||||||||||||||||| ||| ||||||||||||||| ||||| | |||| ||||||||||||| ||| |
|
|
| T |
8693252 |
tgaattccttgggcatgacagaggcttggaagattttcaaatactacatattctagatttggaatctcgactttctcatcacgaccttcacttgcaaata |
8693351 |
T |
|
| Q |
182 |
tttcctctagctcatctgcttctcttatcactagacactttagctcaggaaactctttacatatggagattggaaa |
257 |
Q |
| |
|
|||| || |||||||||||||||||||| | ||| ||||||||||||| ||| ||||||||||||| |||||| |
|
|
| T |
8693352 |
tttcatccagctcatctgcttctcttatgatcagaacatttagctcaggaagctcgttacatatggagactggaaa |
8693427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 257
Target Start/End: Original strand, 54681 - 54818
Alignment:
| Q |
120 |
aaatactacaaattttagatttggaatctccactttgtgatcatcaccttcacttgcagatatttcctctagctcatctgcttctcttatcactagacac |
219 |
Q |
| |
|
|||| |||||| ||| |||||||||| | ||||| |||||| | |||||| | || |||||||||||||||||| |||||||||||| | |||| |
|
|
| T |
54681 |
aaatgctacaactttcagatttggaagattgactttctgatcaccttcttcacatacaaatatttcctctagctcatgtgcttctcttatgattagagca |
54780 |
T |
|
| Q |
220 |
tttagctcaggaaactctttacatatggagattggaaa |
257 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
54781 |
tctagctcaggaagctctttacatatggagattggaaa |
54818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University