View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7063_low_9 (Length: 253)

Name: NF7063_low_9
Description: NF7063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7063_low_9
NF7063_low_9
[»] scaffold0676 (1 HSPs)
scaffold0676 (1-245)||(1829-2073)
[»] scaffold0004 (2 HSPs)
scaffold0004 (1-245)||(8651-8895)
scaffold0004 (4-89)||(2107-2192)
[»] scaffold0863 (1 HSPs)
scaffold0863 (1-245)||(4276-4520)
[»] scaffold0594 (1 HSPs)
scaffold0594 (5-245)||(3896-4136)
[»] scaffold0193 (1 HSPs)
scaffold0193 (1-245)||(6582-6825)
[»] chr7 (9 HSPs)
chr7 (4-207)||(13131215-13131418)
chr7 (135-183)||(2712654-2712702)
chr7 (135-183)||(8009110-8009158)
chr7 (135-183)||(9089048-9089096)
chr7 (135-183)||(11009000-11009048)
chr7 (135-183)||(24737916-24737964)
chr7 (135-183)||(26397137-26397185)
chr7 (135-183)||(26692782-26692830)
chr7 (135-183)||(40049145-40049193)
[»] chr8 (12 HSPs)
chr8 (7-245)||(20378538-20378775)
chr8 (2-245)||(17263142-17263385)
chr8 (4-246)||(24648685-24648927)
chr8 (120-191)||(22526816-22526887)
chr8 (135-183)||(245642-245690)
chr8 (135-183)||(808762-808810)
chr8 (135-183)||(3355626-3355674)
chr8 (135-183)||(9344933-9344981)
chr8 (135-183)||(13695561-13695609)
chr8 (135-183)||(29080225-29080273)
chr8 (135-183)||(36296756-36296804)
chr8 (135-183)||(44484947-44484995)
[»] scaffold0379 (1 HSPs)
scaffold0379 (1-246)||(1354-1599)
[»] chr5 (21 HSPs)
chr5 (1-242)||(92758-92998)
chr5 (13-245)||(23434130-23434362)
chr5 (13-245)||(23445497-23445729)
chr5 (7-89)||(21613496-21613578)
chr5 (135-183)||(6982886-6982934)
chr5 (135-183)||(9343034-9343082)
chr5 (135-183)||(14037121-14037169)
chr5 (135-183)||(14561787-14561835)
chr5 (135-183)||(22683197-22683245)
chr5 (135-183)||(23303358-23303406)
chr5 (135-183)||(23369015-23369063)
chr5 (135-183)||(23703859-23703907)
chr5 (135-183)||(24574152-24574200)
chr5 (135-183)||(24591795-24591843)
chr5 (135-183)||(24814993-24815041)
chr5 (135-183)||(24820609-24820657)
chr5 (135-183)||(27467241-27467289)
chr5 (135-183)||(30231160-30231208)
chr5 (135-183)||(36586249-36586297)
chr5 (135-183)||(39494619-39494667)
chr5 (135-183)||(42049859-42049907)
[»] scaffold0396 (1 HSPs)
scaffold0396 (74-245)||(10443-10614)
[»] scaffold0084 (1 HSPs)
scaffold0084 (1-242)||(41613-41854)
[»] scaffold0810 (1 HSPs)
scaffold0810 (4-246)||(718-960)
[»] chr1 (6 HSPs)
chr1 (13-233)||(36137794-36138014)
chr1 (135-183)||(7511047-7511095)
chr1 (172-232)||(22461035-22461095)
chr1 (135-183)||(36243433-36243481)
chr1 (135-183)||(38098860-38098908)
chr1 (135-183)||(51652877-51652925)
[»] chr3 (21 HSPs)
chr3 (1-87)||(12954746-12954832)
chr3 (139-247)||(17251696-17251804)
chr3 (8-89)||(17220164-17220245)
chr3 (140-233)||(18137942-18138035)
chr3 (3-89)||(18137805-18137891)
chr3 (135-183)||(4747551-4747599)
chr3 (135-183)||(5543977-5544025)
chr3 (135-183)||(5872657-5872705)
chr3 (135-183)||(11279356-11279404)
chr3 (135-183)||(12244514-12244562)
chr3 (135-183)||(12293146-12293194)
chr3 (135-183)||(13125522-13125570)
chr3 (135-183)||(14469452-14469500)
chr3 (135-183)||(16426115-16426163)
chr3 (135-183)||(23761129-23761177)
chr3 (135-183)||(24390475-24390523)
chr3 (135-183)||(24663702-24663750)
chr3 (135-183)||(28321194-28321242)
chr3 (135-183)||(38198603-38198651)
chr3 (135-183)||(39375917-39375965)
chr3 (135-183)||(41687481-41687529)
[»] chr2 (8 HSPs)
chr2 (1-242)||(18941610-18941852)
chr2 (135-183)||(9769737-9769785)
chr2 (135-183)||(9904547-9904595)
chr2 (135-183)||(10270774-10270822)
chr2 (135-183)||(11402150-11402198)
chr2 (135-183)||(27225218-27225266)
chr2 (135-183)||(39177072-39177120)
chr2 (135-183)||(43349191-43349239)
[»] scaffold0203 (1 HSPs)
scaffold0203 (1-60)||(23626-23685)
[»] scaffold0217 (1 HSPs)
scaffold0217 (7-230)||(10523-10746)
[»] scaffold0324 (1 HSPs)
scaffold0324 (1-59)||(11518-11576)
[»] scaffold0133 (1 HSPs)
scaffold0133 (135-183)||(34948-34996)
[»] scaffold0105 (1 HSPs)
scaffold0105 (135-183)||(43951-43999)
[»] chr6 (8 HSPs)
chr6 (135-183)||(3665214-3665262)
chr6 (135-183)||(12723804-12723852)
chr6 (135-183)||(16952793-16952841)
chr6 (135-183)||(25791502-25791550)
chr6 (135-183)||(26029207-26029255)
chr6 (135-183)||(26868590-26868638)
chr6 (135-183)||(27376580-27376628)
chr6 (135-183)||(27466937-27466985)
[»] chr4 (5 HSPs)
chr4 (135-183)||(454411-454459)
chr4 (135-183)||(10747558-10747606)
chr4 (135-183)||(10961327-10961375)
chr4 (135-183)||(27660459-27660507)
chr4 (135-183)||(36022137-36022185)


Alignment Details
Target: scaffold0676 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: scaffold0676
Description:

Target: scaffold0676; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 2073 - 1829
Alignment:
Q  1 tactacgaagcacaaggtctcatggaatacttcaagatgttgaatggtccaacatacaagacacttgttaggcacttctgggttagagcgcatatgtatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2073 tactacgaagcacaaggtctcatggaatacttcaagatgttgaatggtccaacatacaagacacttgttaggcacttctgggttagagcgcatatgtatg 1974  T
Q  101 acaagaatgttgtaaagctggaggaaacatagaagattctgattgatcctactatggagggaaagtcaagagaagaaatgggtttagaaccatttaaatg 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1973 acaagaatgttgtaaagctggaggaaacagagaagattctgattgatcctactatggagggaaagtcaagagaagaaatgggtttagaaccatttaaatg 1874  T
Q  201 cactgaaatcaggtcacgcatcatgggcattcctgttttcatctc 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  1873 cactgaaatcaggtcacgcatcatgggcattcctgttttcatctc 1829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 8651 - 8895
Alignment:
Q  1 tactacgaagcacaaggtctcatggaatacttcaagatgttgaatggtccaacatacaagacacttgttaggcacttctgggttagagcgcatatgtatg 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| | ||||    
T  8651 tactacgaagcataaggtctcatggaatacttcaagatgttgaatggtccaacatacaagacacttgtgaggcacttctgggttagagcacatgtttatg 8750  T
Q  101 acaagaatgttgtaaagctggaggaaacatagaagattctgattgatcctactatggagggaaagtcaagagaagaaatgggtttagaaccatttaaatg 200  Q
    ||||||||| || || | | || |||||| ||||||||||||||||||| |||||||||||||| ||  | ||||||||||| ||||||||||||  |||    
T  8751 acaagaatgatgcaaggttagaagaaacagagaagattctgattgatccaactatggagggaaaatctcgtgaagaaatggggttagaaccatttgtatg 8850  T
Q  201 cactgaaatcaggtcacgcatcatgggcattcctgttttcatctc 245  Q
    |||||||||||||||| |||||||  ||||| |||||||||||||    
T  8851 cactgaaatcaggtcaagcatcataagcatttctgttttcatctc 8895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 2192 - 2107
Alignment:
Q  4 tacgaagcacaaggtctcatggaatacttcaagatgttgaatggtccaacatacaagacacttgttaggcacttctgggttagagc 89  Q
    |||||||| |||||||||||||| || ||||| ||||| ||||||| |||||||||||| ||| ||||||| |||||||| |||||    
T  2192 tacgaagctcaaggtctcatggattagttcaatatgttaaatggtctaacatacaagactcttattaggcagttctgggtaagagc 2107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0863 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0863
Description:

Target: scaffold0863; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 4276 - 4520
Alignment:
Q  1 tactacgaagcacaaggtctcatggaatacttcaagatgttgaatggtccaacatacaagacacttgttaggcacttctgggttagagcgcatatgtatg 100  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||  | || ||||| ||| |||||| ||| |||| |||| ||||||    
T  4276 tactacgaagcacaaggtctaatggagtacttcaagatgttgaatggtccaacatatcaaactcttgtcaggaacttctaggtaagagtgcatgtgtatg 4375  T
Q  101 acaagaatgttgtaaagctggaggaaacatagaagattctgattgatcctactatggagggaaagtcaagagaagaaatgggtttagaaccatttaaatg 200  Q
    |||| |||| ||  ||||||||||||||| ||||||||||||||||||||||| |||| ||||| | |||||||||||| ||||||||||||||||||||    
T  4376 acaaaaatgctgctaagctggaggaaacagagaagattctgattgatcctactttggaaggaaaataaagagaagaaattggtttagaaccatttaaatg 4475  T
Q  201 cactgaaatcaggtcacgcatcatgggcattcctgttttcatctc 245  Q
    |||||||||||||| | ||||||  ||||||||||||||| ||||    
T  4476 cactgaaatcaggttaagcatcactggcattcctgttttcgtctc 4520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 5 - 245
Target Start/End: Original strand, 3896 - 4136
Alignment:
Q  5 acgaagcacaaggtctcatggaatacttcaagatgttgaatggtccaacatacaagacacttgttaggcacttctgggttagagcgcatatgtatgacaa 104  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||   ||| || ||||| || |||||||||||| ||||||||||    
T  3896 acgaagcacaaggtctcatggagtacttcaagatgttgaatggtccaacatacaaaacttatgtcagacacttatgtgttagagcgcatgtgtatgacaa 3995  T
Q  105 gaatgttgtaaagctggaggaaacatagaagattctgattgatcctactatggagggaaagtcaagagaagaaatgggtttagaaccatttaaatgcact 204  Q
    ||||| || |||| | || |||||  |||||||||||||||||||||| ||||| ||||| ||  ||||||||||||||||||||||||||  ||||||     
T  3996 gaatgctgcaaagttagaagaaactgagaagattctgattgatcctaccatggaaggaaaatctcgagaagaaatgggtttagaaccatttgtatgcaca 4095  T
Q  205 gaaatcaggtcacgcatcatgggcattcctgttttcatctc 245  Q
     || |||| ||| ||||||||| ||| ||||||||||||||    
T  4096 aaagtcagatcaagcatcatggacatccctgttttcatctc 4136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 6825 - 6582
Alignment:
Q  1 tactacgaagcacaaggtctcatggaatacttcaagatgttgaatggtccaacatacaagacacttgttaggcacttctgggttagagcgcatatgtatg 100  Q
    |||||||||| ||| ||||||||| | ||||| |||||||||||||||||||||||||| || ||||| |||||||| | ||||||||||||| ||||||    
T  6825 tactacgaagtacacggtctcatgcagtactttaagatgttgaatggtccaacatacaaaactcttgtcaggcacttattggttagagcgcatgtgtatg 6726  T
Q  101 acaagaatgttgtaaagctggaggaaacatagaagattctgattgatcctactatggagggaaagtcaagagaagaaatgggtttagaaccatttaaatg 200  Q
    |||||||   |  |||| | || ||||   |||||||| ||||||||||||||||||| ||||| ||  |||||||||||||||||||| ||||||  ||    
T  6725 acaagaaaactacaaagttagaagaaatggagaagattttgattgatcctactatggaaggaaaatctcgagaagaaatgggtttagaa-catttacttg 6627  T
Q  201 cactgaaatcaggtcacgcatcatgggcattcctgttttcatctc 245  Q
    ||| |||||||||||| ||||||||||||| ||||||| ||||||    
T  6626 cacagaaatcaggtcaagcatcatgggcatccctgtttacatctc 6582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 6e-52; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 4 - 207
Target Start/End: Original strand, 13131215 - 13131418
Alignment:
Q  4 tacgaagcacaaggtctcatggaatacttcaagatgttgaatggtccaacatacaagacacttgttaggcacttctgggttagagcgcatatgtatgaca 103  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||||  | |||||||| || ||||||||||| ||||  ||| |||||||||    
T  13131215 tacgaagcacaaggtctaatggaatacttcaagatgttgaatggcccaacatatcaaacacttgtgagacacttctgggtaagagaacatgtgtatgaca 13131314  T
Q  104 agaatgttgtaaagctggaggaaacatagaagattctgattgatcctactatggagggaaagtcaagagaagaaatgggtttagaaccatttaaatgcac 203  Q
    | |||  |   ||||||||||||||| |||| |||||||||||||||||| |||| ||||| |||||||||||||||||||||||||| |||  ||||||    
T  13131315 aaaatactactaagctggaggaaacagagaaaattctgattgatcctactttggaaggaaaatcaagagaagaaatgggtttagaaccttttgtatgcac 13131414  T
Q  204 tgaa 207  Q
    ||||    
T  13131415 tgaa 13131418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 2712654 - 2712702
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  2712654 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 2712702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 8009110 - 8009158
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  8009110 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 8009158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 9089096 - 9089048
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  9089096 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 9089048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 11009048 - 11009000
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  11009048 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 11009000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 24737964 - 24737916
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  24737964 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 24737916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 26397137 - 26397185
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  26397137 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 26397185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 26692782 - 26692830
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  26692782 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 26692830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 40049145 - 40049193
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  40049145 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 40049193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 6e-49; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 7 - 245
Target Start/End: Original strand, 20378538 - 20378775
Alignment:
Q  7 gaagcacaaggtctcatggaatacttcaagatgttgaatggtccaacatacaagacacttgttaggcacttctgggttagagcgcatatgtatgacaaga 106  Q
    ||||| |||||||||||||| |||||||| |||||||||||| ||||||||||||| ||||| |||||||||| ||||||||||||| | ||||| ||||    
T  20378538 gaagctcaaggtctcatggagtacttcaaaatgttgaatggtgcaacatacaagactcttgtcaggcacttcttggttagagcgcatgtttatgataaga 20378637  T
Q  107 atgttgtaaagctggaggaaacatagaagattctgattgatcctactatggagggaaagtcaagagaagaaatgggtttagaaccatttaaatgcactga 206  Q
    | | ||  ||| |||| |||| | | ||| || |||||||||||||  |||| ||||| ||| |||||||||||||||||||||||||||  ||||  ||    
T  20378638 aggctgctaagttggaagaaatagaaaag-ttttgattgatcctaccttggaaggaaaatcacgagaagaaatgggtttagaaccatttacttgcagaga 20378736  T
Q  207 aatcaggtcacgcatcatgggcattcctgttttcatctc 245  Q
    ||||||||||  |||||||||||| ||| ||||||||||    
T  20378737 aatcaggtcaaacatcatgggcatccctattttcatctc 20378775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 2 - 245
Target Start/End: Complemental strand, 17263385 - 17263142
Alignment:
Q  2 actacgaagcacaaggtctcatggaatacttcaagatgttgaatggtccaacatacaagacacttgttaggcacttctgggttagagcgcatatgtatga 101  Q
    |||||||||| |||||||| |||||||||||||| |||| |||||| |||||||||||||| ||||| |||||||||||||| ||||||||| | || ||    
T  17263385 actacgaagctcaaggtcttatggaatacttcaaaatgtagaatggcccaacatacaagacccttgtcaggcacttctgggtcagagcgcatgtttacga 17263286  T
Q  102 caagaatgttgtaaagctggaggaaacatagaagattctgattgatcctactatggagggaaagtcaagagaagaaatgggtttagaaccatttaaatgc 201  Q
     | ||| | ||    |||||| |||| | ||||  || |||||||||||||  |||| ||||| |||  ||||||||||||||| |||||||||| |||     
T  17263285 tatgaaggctgctctgctggaagaaatagagaaagttttgattgatcctaccctggaaggaaaatcacaagaagaaatgggtttggaaccatttacatgg 17263186  T
Q  202 actgaaatcaggtcacgcatcatgggcattcctgttttcatctc 245  Q
    || |||||||||||| ||||||||||| | ||||||||||||||    
T  17263185 acagaaatcaggtcaagcatcatgggcgtccctgttttcatctc 17263142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 246
Target Start/End: Complemental strand, 24648927 - 24648685
Alignment:
Q  4 tacgaagcacaaggtctcatggaatacttcaagatgttgaatggtccaacatacaagacacttgttaggcacttctgggttagagcgcatatgtatgaca 103  Q
    ||||||| ||||||| | ||||| | |||||||||||||||||||||||||||||   | ||||| ||||| |||||||| || |  ||| || |||| |    
T  24648927 tacgaagtacaaggtttaatggatttcttcaagatgttgaatggtccaacatacacatctcttgtaaggcaattctgggtaagggtacatgtggatgata 24648828  T
Q  104 agaatgttgtaaagctggaggaaacatagaagattctgattgatcctactatggagggaaagtcaagagaagaaatgggtttagaaccatttaaatgcac 203  Q
    |  ||| ||  ||||||||||||||| ||||||||| ||||||||||||  |||| || || ||||||||||||| ||| |||||||| || | ||||||    
T  24648827 aacatgctgctaagctggaggaaacagagaagattcagattgatcctacattggaaggtaaatcaagagaagaaacgggcttagaaccgttcagatgcac 24648728  T
Q  204 tgaaatcaggtcacgcatcatgggcattcctgttttcatctca 246  Q
    ||| || |||||| |||| ||||| ||||||||||||||||||    
T  24648727 tgagataaggtcaagcataatggggattcctgttttcatctca 24648685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 191
Target Start/End: Original strand, 22526816 - 22526887
Alignment:
Q  120 ggaggaaacatagaagattctgattgatcctactatggagggaaagtcaagagaagaaatgggtttagaacc 191  Q
    |||||||||  ||||||||||||||||||||||  |||| || || |||||||| ||| |||| ||||||||    
T  22526816 ggaggaaactgagaagattctgattgatcctacattggaaggtaaatcaagagatgaattgggcttagaacc 22526887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 245690 - 245642
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  245690 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 245642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 808810 - 808762
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  808810 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 808762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 3355626 - 3355674
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  3355626 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 3355674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 9344981 - 9344933
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  9344981 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 9344933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 13695561 - 13695609
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  13695561 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 13695609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 29080273 - 29080225
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  29080273 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 29080225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 36296804 - 36296756
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  36296804 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 36296756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 44484995 - 44484947
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  44484995 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 44484947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0379 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: scaffold0379
Description:

Target: scaffold0379; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 1599 - 1354
Alignment:
Q  1 tactacgaagcacaaggtctcatggaatacttcaagatgttgaatggtccaacatacaagacacttgttaggcacttctgggttagagcgcatatgtatg 100  Q
    ||||||||||||||||||||  ||||||| ||||| ||| ||||||||| ||||||  | |||| ||| || ||||||||||| ||||| ||| ||||||    
T  1599 tactacgaagcacaaggtctattggaatatttcaaaatgctgaatggtcgaacatatcaaacacctgtgagacacttctgggtcagagcacatgtgtatg 1500  T
Q  101 acaagaatgttgtaaagctggaggaaacatagaagattctgattgatcctactatggagggaaagtcaagagaagaaatgggtttagaaccatttaaatg 200  Q
    | || | ||  |  ||| | ||||||| | ||||||||||||||||||||||  |||| ||||| | ||||||||||||||||||||||||||||  |||    
T  1499 ataaaactgaagctaagttagaggaaatagagaagattctgattgatcctacattggaaggaaaattaagagaagaaatgggtttagaaccatttgtatg 1400  T
Q  201 cactgaaatcaggtcacgcatcatgggcattcctgttttcatctca 246  Q
    |||||||||| ||||| |||| ||||| ||||| ||||||||||||    
T  1399 cactgaaatccggtcaagcataatggggattccggttttcatctca 1354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 92758 - 92998
Alignment:
Q  1 tactacgaagcacaaggtctcatggaatacttcaagatgttgaatggtccaacatacaagacacttgttaggcacttctgggttagagcgcatatgtatg 100  Q
    |||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||| ||  | | ||| || ||||| ||||| ||| | || |    
T  92758 tactacgaagcacaaggtctcatggattacttcgaaatgttgaatggtccaacatacaagactctcatcatgcatttatgggtaagagcacatgtctacg 92857  T
Q  101 acaagaatgttgtaaagctggaggaaacatagaagattctgattgatcctactatggagggaaagtcaagagaagaaatgggtttagaaccatttaaatg 200  Q
    ||| ||| | ||  ||  |||| |||||| |||| || |||||||||||||||||||| || || ||||||||||||| ||||||  ||||||||| |||    
T  92858 acaggaaggctgctaaattggaagaaacagagaaaatcctgattgatcctactatggaagggaaatcaagagaagaaa-gggtttgaaaccatttacatg 92956  T
Q  201 cactgaaatcaggtcacgcatcatgggcattcctgttttcat 242  Q
    ||| |||||||||||| | ||||||||||| |||||||||||    
T  92957 cacagaaatcaggtcaagtatcatgggcatccctgttttcat 92998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 13 - 245
Target Start/End: Original strand, 23434130 - 23434362
Alignment:
Q  13 caaggtctcatggaatacttcaagatgttgaatggtccaacatacaagacacttgttaggcacttctgggttagagcgcatatgtatgacaagaatgttg 112  Q
    |||||||||||||||||||||||  || ||||||||||||| ||||||||  |||||||| | || ||||||||||| ||| | |||||||| || | ||    
T  23434130 caaggtctcatggaatacttcaaattgctgaatggtccaacttacaagactattgttaggaatttatgggttagagcacatgtttatgacaataaagctg 23434229  T
Q  113 taaagctggaggaaacatagaagattctgattgatcctactatggagggaaagtcaagagaagaaatgggtttagaaccatttaaatgcactgaaatcag 212  Q
      ||| |||| ||| || | || || |||||||||||||||||  || |||| |||| || ||| ||||| || ||||| || | |   || || |||||    
T  23434230 ctaaggtggaagaagcagataaaatcctgattgatcctactataaagagaaaatcaatagcagatatgggattggaacccttcacagttacagagatcag 23434329  T
Q  213 gtcacgcatcatgggcattcctgttttcatctc 245  Q
    |||| ||||||||||||| ||| ||||||||||    
T  23434330 gtcaagcatcatgggcatccctattttcatctc 23434362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 13 - 245
Target Start/End: Original strand, 23445497 - 23445729
Alignment:
Q  13 caaggtctcatggaatacttcaagatgttgaatggtccaacatacaagacacttgttaggcacttctgggttagagcgcatatgtatgacaagaatgttg 112  Q
    |||||||||||||||||||||||  || ||||||||||||| ||||||||  |||||||| | || ||||||||||| ||| | |||||||| || | ||    
T  23445497 caaggtctcatggaatacttcaaattgctgaatggtccaacttacaagactattgttaggaatttatgggttagagcacatgtttatgacaataaagctg 23445596  T
Q  113 taaagctggaggaaacatagaagattctgattgatcctactatggagggaaagtcaagagaagaaatgggtttagaaccatttaaatgcactgaaatcag 212  Q
      ||| |||| ||| || | || || |||||||||||||||||  || |||| |||| || ||| ||||| || ||||| || | |   || || |||||    
T  23445597 ctaaggtggaagaagcagataaaatcctgattgatcctactataaagagaaaatcaatagcagatatgggattggaacccttcacagttacagagatcag 23445696  T
Q  213 gtcacgcatcatgggcattcctgttttcatctc 245  Q
    |||| ||||||||||||| ||| ||||||||||    
T  23445697 gtcaagcatcatgggcatccctattttcatctc 23445729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 89
Target Start/End: Original strand, 21613496 - 21613578
Alignment:
Q  7 gaagcacaaggtctcatggaatacttcaagatgttgaatggtccaacatacaagacacttgttaggcacttctgggttagagc 89  Q
    ||||||||||| || ||||| |||||||| ||||||||||| ||||||||  | ||||| || |||||||||| |||||||||    
T  21613496 gaagcacaaggcctaatggattacttcaatatgttgaatggaccaacatatcaaacactggtaaggcacttcttggttagagc 21613578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 6982886 - 6982934
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  6982886 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 6982934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 9343034 - 9343082
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  9343034 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 9343082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 14037121 - 14037169
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  14037121 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 14037169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 14561835 - 14561787
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  14561835 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 14561787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 22683197 - 22683245
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  22683197 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 22683245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 23303358 - 23303406
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  23303358 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 23303406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 23369015 - 23369063
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  23369015 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 23369063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 23703859 - 23703907
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  23703859 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 23703907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 24574152 - 24574200
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  24574152 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 24574200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 24591843 - 24591795
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  24591843 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 24591795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 24814993 - 24815041
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  24814993 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 24815041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 24820657 - 24820609
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  24820657 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 24820609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 27467241 - 27467289
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  27467241 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 27467289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 30231208 - 30231160
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  30231208 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 30231160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 36586297 - 36586249
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  36586297 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 36586249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 39494667 - 39494619
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  39494667 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 39494619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 42049859 - 42049907
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  42049859 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 42049907  T

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Target: scaffold0396 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 74 - 245
Target Start/End: Original strand, 10443 - 10614
Alignment:
Q  74 acttctgggttagagcgcatatgtatgacaagaatgttgtaaagctggaggaaacatagaagattctgattgatcctactatggagggaaagtcaagaga 173  Q
    |||||||||| ||||| ||| |||||||||| |||| |   ||||||||||||| | |||| ||||| |||||||||||| |||| ||||| ||||||||    
T  10443 acttctgggtaagagcacatgtgtatgacaaaaatgctactaagctggaggaaatagagaaaattctaattgatcctactttggaaggaaaatcaagaga 10542  T
Q  174 agaaatgggtttagaaccatttaaatgcactgaaatcaggtcacgcatcatgggcattcctgttttcatctc 245  Q
    |||||| |||||||||||||||  ||||||||||||||||||| |||||||| | |||||||||||||||||    
T  10543 agaaataggtttagaaccatttgtatgcactgaaatcaggtcaagcatcatgaggattcctgttttcatctc 10614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 41854 - 41613
Alignment:
Q  1 tactacgaagcacaaggtctcatggaatacttcaagatgttgaatggtccaacatacaagacacttgttaggcacttctgggttagagcgcatatgtatg 100  Q
    ||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||| ||||||||| ||||||| ||  | || |    
T  41854 tactatgaagcacaaggtctcatggattacttcaatatgttgaatggtccaacatacaaggcacttgttagacacttctggattagagcacaggtctacg 41755  T
Q  101 acaagaatgttgtaaagctggaggaaacatagaagattctgattgatcctactatggagggaaagtcaagagaagaaatgggtttagaaccatttaaatg 200  Q
    |||  || | |   ||| |||| |||||| | ||  |  ||||| |||||||| |||| ||||| ||||  || ||||||||| | |||||||| |||||    
T  41754 acagaaaggctactaagttggaagaaacaaaaaaagtgttgattaatcctactctggaaggaaaatcaattgatgaaatgggtctggaaccattcaaatg 41655  T
Q  201 cactgaaatcaggtcacgcatcatgggcattcctgttttcat 242  Q
    |||  |||| |||||| ||||||||||||| |||||||||||    
T  41654 cacataaattaggtcaagcatcatgggcatccctgttttcat 41613  T

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Target: scaffold0810 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0810
Description:

Target: scaffold0810; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 4 - 246
Target Start/End: Original strand, 718 - 960
Alignment:
Q  4 tacgaagcacaaggtctcatggaatacttcaagatgttgaatggtccaacatacaagacacttgttaggcacttctgggttagagcgcatatgtatgaca 103  Q
    ||||||| ||||||| | ||||| |||||||||||| ||||| ||||||||||||   | ||||| ||||| |||||||| || || ||| ||| ||| |    
T  718 tacgaagtacaaggtttaatggattacttcaagatgctgaatagtccaacatacacatctcttgtaaggcatttctgggtaagggcacatgtgtttgata 817  T
Q  104 agaatgttgtaaagctggaggaaacatagaagattctgattgatcctactatggagggaaagtcaagagaagaaatgggtttagaaccatttaaatgcac 203  Q
    |  ||| ||  ||||| ||||||||| | |||||| ||||| |||||||  |||| || || ||||||||||||||||| |||||||| ||    |||||    
T  818 aacatgctgctaagcttgaggaaacagaaaagattatgattaatcctacattggaaggtaaatcaagagaagaaatgggcttagaaccgttcgtttgcac 917  T
Q  204 tgaaatcaggtcacgcatcatgggcattcctgttttcatctca 246  Q
    ||| || |||||| |||| ||||| |||||  |||||||||||    
T  918 tgagataaggtcaagcataatggggattccgattttcatctca 960  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 233
Target Start/End: Complemental strand, 36138014 - 36137794
Alignment:
Q  13 caaggtctcatggaatacttcaagatgttgaatggtccaacatacaagacacttgttaggcacttctgggttagagcgcatatgtatgacaagaatgttg 112  Q
    ||||| ||||| || |||||||| ||||||||||| ||||||||  | || || || ||||||||||||||||||||   | | || |||||  | | ||    
T  36138014 caaggcctcatagattacttcaatatgttgaatggaccaacatatcaaacgctcgtaaggcacttctgggttagagcaagtgtctacgacaaagaaggtg 36137915  T
Q  113 taaagctggaggaaacatagaagattctgattgatcctactatggagggaaagtcaagagaagaaatgggtttagaaccatttaaatgcactgaaatcag 212  Q
      ||| |||| ||| || | ||| | ||||||||||||||| |||||||||| ||    ||||||||||||||||||||||||   |||||||| || ||    
T  36137914 ctaaggtggaagaagcagaaaaggtactgattgatcctactttggagggaaaatctcatgaagaaatgggtttagaaccatttgtttgcactgagataag 36137815  T
Q  213 gtcacgcatcatgggcattcc 233  Q
    |||| ||||||||||||||||    
T  36137814 gtcaagcatcatgggcattcc 36137794  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 7511095 - 7511047
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  7511095 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 7511047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 22461035 - 22461095
Alignment:
Q  172 gaagaaatgggtttagaaccatttaaatgcactgaaatcaggtcacgcatcatgggcattc 232  Q
    ||||||||||| ||||||||||||   |||||||| || |||||  |||||||||||||||    
T  22461035 gaagaaatgggattagaaccatttgtctgcactgagataaggtccagcatcatgggcattc 22461095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 36243433 - 36243481
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  36243433 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 36243481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 38098908 - 38098860
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  38098908 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 38098860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 51652877 - 51652925
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  51652877 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 51652925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 12954746 - 12954832
Alignment:
Q  1 tactacgaagcacaaggtctcatggaatacttcaagatgttgaatggtccaacatacaagacacttgttaggcacttctgggttaga 87  Q
    ||||||||||| |||||||||||||| || ||||| ||| |||||||||||||||||||||| ||  |||||||||| |||||||||    
T  12954746 tactacgaagctcaaggtctcatggagtatttcaaaatgctgaatggtccaacatacaagactctcattaggcacttatgggttaga 12954832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 247
Target Start/End: Original strand, 17251696 - 17251804
Alignment:
Q  139 ctgattgatcctactatggagggaaagtcaagagaagaaatgggtttagaaccatttaaatgcactgaaatcaggtcacgcatcatgggcattcctgttt 238  Q
    ||||||||||||| | |||| || ||  ||||| ||||||||||||| ||||| || | ||||||  ||||||||||| ||||||||||||| | |||||    
T  17251696 ctgattgatcctattctggatggtaaaacaagataagaaatgggtttggaacccttcacatgcacataaatcaggtcaagcatcatgggcatccatgttt 17251795  T
Q  239 tcatctcac 247  Q
    |||||||||    
T  17251796 tcatctcac 17251804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 17220164 - 17220245
Alignment:
Q  8 aagcacaaggtctcatggaatacttcaagatgttgaatggtccaacatacaagacacttgttaggcacttctgggttagagc 89  Q
    |||| |||||||| ||||| |||||||| ||||||||||||| ||| |||||||  ||||||||||| || |||||||||||    
T  17220164 aagctcaaggtcttatggattacttcaacatgttgaatggtctaacttacaagagccttgttaggcatttttgggttagagc 17220245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 233
Target Start/End: Original strand, 18137942 - 18138035
Alignment:
Q  140 tgattgatcctactatggagggaaagtcaagagaagaaatgggtttagaaccatttaaatgcactgaaatcaggtcacgcatcatgggcattcc 233  Q
    ||||||||||  || |||||||||| ||  | ||||||||||||||||||||||||   |||||||| || || ||| | ||||||||||||||    
T  18137942 tgattgatccatctttggagggaaaatctcgtgaagaaatgggtttagaaccatttgtctgcactgagataagatcaagtatcatgggcattcc 18138035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 18137805 - 18137891
Alignment:
Q  3 ctacgaagcacaaggtctcatggaatacttcaagatgttgaatggtccaacatacaagacacttgttaggcacttctgggttagagc 89  Q
    |||||||||||||||  |  | || |||||||| ||||||||||| ||||||||  | || || || ||||||||||||||||||||    
T  18137805 ctacgaagcacaaggcttattagattacttcaaaatgttgaatggaccaacatatcaaacgctggtaaggcacttctgggttagagc 18137891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 4747599 - 4747551
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  4747599 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 4747551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 5543977 - 5544025
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  5543977 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 5544025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 5872657 - 5872705
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  5872657 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 5872705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 11279356 - 11279404
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  11279356 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 11279404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 12244514 - 12244562
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  12244514 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 12244562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 12293146 - 12293194
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  12293146 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 12293194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 13125570 - 13125522
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    |||||||||||||||| || ||||||||||  | |||||||||||||||    
T  13125570 gattctgattgatccttctttggagggaaaaaccagagaagaaatgggt 13125522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 14469500 - 14469452
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    |||||||||||||||| || ||||||||||  | |||||||||||||||    
T  14469500 gattctgattgatccttctttggagggaaaaaccagagaagaaatgggt 14469452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 16426115 - 16426163
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  16426115 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 16426163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 23761177 - 23761129
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  23761177 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 23761129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 24390475 - 24390523
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  24390475 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 24390523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 24663750 - 24663702
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  24663750 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 24663702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 28321194 - 28321242
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  28321194 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 28321242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 38198651 - 38198603
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  38198651 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 38198603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 39375965 - 39375917
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  39375965 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 39375917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 41687529 - 41687481
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  41687529 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 41687481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 18941852 - 18941610
Alignment:
Q  1 tactacgaagcacaaggtctcatggaatacttcaagatgttgaatggtccaacatacaagacacttgtt-aggcacttctgggttagagcgcatatgtat 99  Q
    |||||||||| || ||||||  |||| ||||||||  ||||| |||| |||||||||||||| |||| | | |||||| ||||| ||| ||||| | |||    
T  18941852 tactacgaagtactaggtcttttggagtacttcaatttgttgtatgggccaacatacaagac-cttgatcaagcacttatgggtaagaacgcatgtctat 18941754  T
Q  100 gacaagaatgttgtaaagctggaggaaacatagaagattctgattgatcctactatggagggaaagtcaagagaagaaatgggtttagaaccatttaaat 199  Q
    |||| |||||  |  |||||||| |||||  |||||||  ||| ||||| | || |  | ||||| || || |||||||||||| |  ||||||| | ||    
T  18941753 gacaggaatgcagccaagctggaagaaactgagaagatattgagtgatcatgctctacaaggaaaatctagggaagaaatgggtctgaaaccattcagat 18941654  T
Q  200 gcactgaaatcaggtcacgcatcat-gggcattcctgttttcat 242  Q
    ||||||||||||||||| ||||||| |||||| |||||||||||    
T  18941653 gcactgaaatcaggtcaagcatcatggggcatccctgttttcat 18941610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 9769737 - 9769785
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    |||||||||||||||| || ||||||||||  | |||||||||||||||    
T  9769737 gattctgattgatccttctttggagggaaaaaccagagaagaaatgggt 9769785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 9904547 - 9904595
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  9904547 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 9904595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 10270822 - 10270774
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  10270822 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 10270774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 11402150 - 11402198
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  11402150 gattctggttgatcctactttggagggaaaaactagagaagaaatgggt 11402198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 27225266 - 27225218
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  27225266 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 27225218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 39177072 - 39177120
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  39177072 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 39177120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 43349239 - 43349191
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  43349239 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 43349191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 23626 - 23685
Alignment:
Q  1 tactacgaagcacaaggtctcatggaatacttcaagatgttgaatggtccaacatacaag 60  Q
    ||||| ||||| |||||||||||||| |||||||| ||||||||||||||||| ||||||    
T  23626 tactatgaagctcaaggtctcatggattacttcaacatgttgaatggtccaacctacaag 23685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 10746 - 10523
Alignment:
Q  7 gaagcacaaggtctcatggaatacttcaagatgttgaatggtccaacatacaagacacttgttaggcacttctgggttagagcgcatatgtatgac-aag 105  Q
    ||||||||||| || ||||| || ||||| ||||||||| | ||||||||  | ||||| || |||||||||||||||||||||  | | ||  || |||    
T  10746 gaagcacaaggcctaatggattatttcaatatgttgaatcgaccaacatatcaaacactggtaaggcacttctgggttagagcgagtgtctacaacaaag 10647  T
Q  106 aatgttgtaaagctggaggaaacatagaagattctgattgatcctactatggagggaaagtcaagagaagaaatgggtttagaaccatttaaatgcactg 205  Q
    |||  ||| ||||| || |||||| | ||||| || ||| | |||||  |||||||||| ||  | |||||||||||| |||||||||||   |||||||    
T  10646 aat-ctgttaagcttgaagaaacagaaaagatactcattaaccctacgctggagggaaaatctcgtgaagaaatgggtctagaaccatttgtctgcactg 10548  T
Q  206 aaatcaggtcacgcatcatgggcat 230  Q
    | || || ||| |||| ||||||||    
T  10547 agataagatcaagcataatgggcat 10523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0324 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0324
Description:

Target: scaffold0324; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 11576 - 11518
Alignment:
Q  1 tactacgaagcacaaggtctcatggaatacttcaagatgttgaatggtccaacatacaa 59  Q
    ||||| ||||| ||||  |||||||| |||||||||||| ||||||||||||| |||||    
T  11576 tactatgaagctcaagacctcatggattacttcaagatgctgaatggtccaacctacaa 11518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 34996 - 34948
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  34996 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 34948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 43951 - 43999
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  43951 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 43999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 3665262 - 3665214
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  3665262 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 3665214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 12723804 - 12723852
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  12723804 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 12723852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 16952841 - 16952793
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  16952841 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 16952793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 25791550 - 25791502
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  25791550 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 25791502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 26029255 - 26029207
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  26029255 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 26029207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 26868638 - 26868590
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  26868638 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 26868590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 27376628 - 27376580
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  27376628 gattctggttgatcctactctggagggaaaaaccagagaagaaatgggt 27376580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 27466985 - 27466937
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  27466985 gattctggttgatcctactctggagggaaaaaccagagaagaaatgggt 27466937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 454459 - 454411
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| |||| |||||  |||||||||||||||||    
T  454459 gattctggttgatcctactttggaaggaaaaacaagagaagaaatgggt 454411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 10747558 - 10747606
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  10747558 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 10747606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 10961327 - 10961375
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  10961327 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 10961375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 27660507 - 27660459
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  27660507 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 27660459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 36022185 - 36022137
Alignment:
Q  135 gattctgattgatcctactatggagggaaagtcaagagaagaaatgggt 183  Q
    ||||||| ||||||||||| ||||||||||  | |||||||||||||||    
T  36022185 gattctggttgatcctactttggagggaaaaaccagagaagaaatgggt 36022137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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