View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7064_high_10 (Length: 225)
Name: NF7064_high_10
Description: NF7064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7064_high_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 47545176 - 47545414
Alignment:
| Q |
1 |
atgattttaaaatgaggaaactttttctatgaatgagtcataataaggacatcaaatccgtaattatg------ata-------aatcct-gtggtgtac |
86 |
Q |
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| T |
47545176 |
atgattttaaaatgaggaaacttgttctatgaatgagtcataataaggacatcaaatccgtaattaagccgaagatatttatgtaagattagtggtgtac |
47545275 |
T |
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| Q |
87 |
caaacaggcctataggcaggcacgaaaacatgggcagtgattttgttttccttaattctatccttcctttccattcacaaatttaatcacagccatgagt |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47545276 |
caaacaggcctataggcaggcacgaaaacatgggcagtgattttgttttccttaattctatccttcctttccattcacaaatttaatcacagccatgagt |
47545375 |
T |
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| Q |
187 |
tttgtagcttgagttgctaatactttgttcttgttcacc |
225 |
Q |
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|||||||||||||||| ||||| |||||||||||||||| |
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| T |
47545376 |
tttgtagcttgagttgttaatattttgttcttgttcacc |
47545414 |
T |
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