View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7064_high_2 (Length: 512)

Name: NF7064_high_2
Description: NF7064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7064_high_2
NF7064_high_2
[»] chr3 (3 HSPs)
chr3 (1-512)||(12546369-12546875)
chr3 (1-169)||(12143715-12143882)
chr3 (1-78)||(12143929-12144006)


Alignment Details
Target: chr3 (Bit Score: 430; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 512
Target Start/End: Complemental strand, 12546875 - 12546369
Alignment:
Q  1 tttattttcttgtattgtgatgaggacaagtgtctctagatcctaactattaggaacaattgtattgctatcctgtctataagagcaggaaaagtgaatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12546875 tttattttcttgtattgtgatgaggacaagtgtctctagatcctaactattaggaacaattgtattgctatcctgtctataagagcaggaaaagtgaatg 12546776  T
Q  101 aataaaggnnnnnnntcattatctcaatactctctctttctcacagacttttcctgacataaaagggaatttaattcttgtctttatttctatcaattgg 200  Q
    ||||| ||       ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  12546775 aataa-ggcagaaaatcattatctcaatactctctcttcctcacagactttccctgacataaaagggaatttaattcttgcctttatttctatcaattgg 12546677  T
Q  201 tgctctcgtttcttgaaatcatgcctcctagacaacaagtcccaccagannnnnnnnaccatccaacagctacaagaatcaatcctccaactcacagcag 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||| |||||||||||||||||||||||||||||||||    
T  12546676 tgctctcgtttcttgaaatcatgcctcctagacaacaagtcccaccagaaccc----accatccaaaagctacaagaatcaatcctccaactcacagcag 12546581  T
Q  301 ccttcacaaatttcaaaaccacccaagaccaaagacatgaagactacatcaactccctgcacaccctacaatcacagatccctacccccagccaaggttc 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12546580 ccttcacaaatttcaaaaccacccaagaccaaagacatgaagactacatcaactccctgcacaccctacaatcacagatccctacccccaaccaaggttc 12546481  T
Q  401 tcctagtattaacactggaaaccaagaccttacccttaaaccacctaaactgcgccttttaccatttgatggtacaaaccccctcgactgggtttttcaa 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12546480 tcctagtattaacactggaaaccaagaccttacccttaaaccacctaaactgcgccttttaccatttgagggtacaaaccccctcgactgggtttttcaa 12546381  T
Q  501 gccaatcaattt 512  Q
    ||||||||||||    
T  12546380 gccaatcaattt 12546369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 12143882 - 12143715
Alignment:
Q  1 tttattttcttgtattgtgatgaggacaagtgtctctagatcctaactattaggaacaattgtattgctatcctgtctataagagcaggaaaagtgaatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12143882 tttattttcttgtattgtgatgaggacaagtgtctctagatcctaactattaggaacaattgtattgctatcctgtctataagagcaggaaaagtgaatg 12143783  T
Q  101 aataaaggnnnnnnntcattatctcaatactctctctttctcacagacttttcctgacataaaagggaa 169  Q
    ||| ||||       ||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  12143782 aat-aaggcagaaaatcattatctcaatactctctcttcctcacagactttccctgacataaaagggaa 12143715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 12144006 - 12143929
Alignment:
Q  1 tttattttcttgtattgtgatgaggacaagtgtctctagatcctaactattaggaacaattgtattgctatcctgtct 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12144006 tttattttcttgtattgtgatgaggacaagtgtctctagatcctaactattaggaacaattgtattgctatcctgtct 12143929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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