View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7064_high_5 (Length: 337)
Name: NF7064_high_5
Description: NF7064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7064_high_5 |
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| [»] scaffold0014 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 23966011 - 23966173
Alignment:
| Q |
18 |
atagagtcaatcaatgatgaggattgtgcatacctgaaataattgaaagaacacagtcattgattgtatcaaccatatctatggttgatgcaagtatagc |
117 |
Q |
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||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
23966011 |
atagagtcaatcaataatgaggattgtgcatacctggaataattgaaagaacatagtcattgattgtatcaaccgcatctatggttgatgcaagtatagg |
23966110 |
T |
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| Q |
118 |
tctttgctgtagataatcagaattgttatacatattcaaaaagtttggataagtacttttcat |
180 |
Q |
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|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
23966111 |
tctttgctgtagataatcaggattgttgtacatattcaaaaagtttggataagtacttttcat |
23966173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 199 - 323
Target Start/End: Original strand, 23966351 - 23966475
Alignment:
| Q |
199 |
tttattcagtgttagaacaatacattcatcccaaatgtatgaagaatttattgatgaatgtacaatgtctggcctgtcagctcttggtgcaactggtaaa |
298 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
23966351 |
tttagtcagtgttagaacaatacattcatcccaaatgtatgaagaatttattgatgaatgtacaatgtctgacctgtcagctcttggaacaactggtaaa |
23966450 |
T |
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| Q |
299 |
atttgccgaaagtctcctccaaaca |
323 |
Q |
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||||||| ||||||||||||||||| |
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| T |
23966451 |
atttgcctaaagtctcctccaaaca |
23966475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 26227287 - 26227125
Alignment:
| Q |
18 |
atagagtcaatcaatgatgaggattgtgcatacctgaaataattgaaagaacacagtcattgattgtatcaaccatatctatggttgatgcaagtatagc |
117 |
Q |
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||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||| ||| ||||||||| |||||||||||||||||| ||||| |
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| T |
26227287 |
atagagtcaatcaataatgaggattgtgcatacctggaataattgaaagaacatagtcatttattttatcaaccacatctatggttgatgcaagaatagc |
26227188 |
T |
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| Q |
118 |
tctttgctgtagataatcagaattgttatacatattcaaaaagtttggataagtacttttcat |
180 |
Q |
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|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26227187 |
tctttgctgtagataatcaggattgttgtacatattcaaaaagtttggataagtacttttcat |
26227125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 22 - 180
Target Start/End: Complemental strand, 33546849 - 33546691
Alignment:
| Q |
22 |
agtcaatcaatgatgaggattgtgcatacctgaaataattgaaagaacacagtcattgattgtatcaaccatatctatggttgatgcaagtatagctctt |
121 |
Q |
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||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||| ||| ||||||||| |||||||||||||||||| ||||||||| |
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| T |
33546849 |
agtcaatcaataatgaggattgtgcatacctggaataattgaaagaacatagtcatttattttatcaaccacatctatggttgatgcaagaatagctctt |
33546750 |
T |
|
| Q |
122 |
tgctgtagataatcagaattgttatacatattcaaaaagtttggataagtacttttcat |
180 |
Q |
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|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33546749 |
tgctgtagataatcaggattgttgtacatattcaaaaagtttggataagtacttttcat |
33546691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 199 - 323
Target Start/End: Complemental strand, 33546513 - 33546389
Alignment:
| Q |
199 |
tttattcagtgttagaacaatacattcatcccaaatgtatgaagaatttattgatgaatgtacaatgtctggcctgtcagctcttggtgcaactggtaaa |
298 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||| ||||||||||| |
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| T |
33546513 |
tttagtcagtgttagaacaatacattcatcccaaatgtatgaagaatttattgatgaatttataatgtctgacctgtcagctcttggcacaactggtaaa |
33546414 |
T |
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| Q |
299 |
atttgccgaaagtctcctccaaaca |
323 |
Q |
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||||||| ||||||||||||||||| |
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| T |
33546413 |
atttgcctaaagtctcctccaaaca |
33546389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 206 - 323
Target Start/End: Complemental strand, 26226940 - 26226823
Alignment:
| Q |
206 |
agtgttagaacaatacattcatcccaaatgtatgaagaatttattgatgaatgtacaatgtctggcctgtcagctcttggtgcaactggtaaaatttgcc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
26226940 |
agtgttagaacaatacattcatcccaaatgtatgaagaatttattgatgaatttataatgtctgacctgtcagctcttggcacaactggtaaaatttgcc |
26226841 |
T |
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| Q |
306 |
gaaagtctcctccaaaca |
323 |
Q |
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||||||||||||||||| |
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| T |
26226840 |
taaagtctcctccaaaca |
26226823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 129515 - 129354
Alignment:
| Q |
18 |
atagagtcaatcaatgatgaggattgtgcatacctgaaataattgaaagaacacagtcattgattgtatcaaccatatctatggttgatgcaagtatagc |
117 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||| ||||||||| || ||||||||||| |
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| T |
129515 |
atagagtcaatcaataatgaggattgtgcatacctggaataattgaaagaacgtagtcattgattttatcaaccacatctatggt-gaagcaagtatagc |
129417 |
T |
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| Q |
118 |
tctttgctgtagataatcagaattgttatacatattcaaaaagtttggataagtacttttcat |
180 |
Q |
| |
|
||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
129416 |
tctttgctgtaaataatcaggattgttgtacatattcaaaaagtttggataagtacttttcat |
129354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 206 - 323
Target Start/End: Complemental strand, 129202 - 129085
Alignment:
| Q |
206 |
agtgttagaacaatacattcatcccaaatgtatgaagaatttattgatgaatgtacaatgtctggcctgtcagctcttggtgcaactggtaaaatttgcc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
129202 |
agtgttagaacaatacattcatcccaaatgtatgaagaatttattgatgaatataaaatgtctgacctgtcagctcttggcacaactggtaaaatttgcc |
129103 |
T |
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| Q |
306 |
gaaagtctcctccaaaca |
323 |
Q |
| |
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||||||||||||||||| |
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|
| T |
129102 |
taaagtctcctccaaaca |
129085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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