View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7064_high_8 (Length: 252)
Name: NF7064_high_8
Description: NF7064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7064_high_8 |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: scaffold0014 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 128987 - 128751
Alignment:
| Q |
1 |
cattggtgcctcatcccatatgatcaagtttgtaacttttaacagttttgcaagatcgttattaccatcaatgttacatgttgagttttcaaatgaagac |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| | |
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| T |
128987 |
cattggtgcttcatcccatatgatcaagtttgtaacttttaacagttttgcaagatcgctataaccatcaatgttacatgttgagttttcaaatgaaggc |
128888 |
T |
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| Q |
101 |
acatatattttgaatttggagtgagctgttcgccctccaggtaacaaaagagaagcaataccacttgttgcaacagttagaacaattttactctgactcc |
200 |
Q |
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|||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
128887 |
acatgtattttgaattttgagtgagcagttcgccctccaggtaacaaaagagaagcaataacacttgttgcaacagttagaacaattttactctgactcc |
128788 |
T |
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| Q |
201 |
tcaatgcagcagctaaagttgtccacataaatgtttt |
237 |
Q |
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| T |
128787 |
tcaatgcagcagctaaagttgtccacataaatgtttt |
128751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 23966573 - 23966809
Alignment:
| Q |
1 |
cattggtgcctcatcccatatgatcaagtttgtaacttttaacagttttgcaagatcgttattaccatcaatgttacatgttgagttttcaaatgaagac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| | |
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| T |
23966573 |
cattggtgcctcatcccatatgatcaagtttgtaacttttaacagttttgcaagatcgctattaccatcaatgttacatgttgagttttcaaataaaggc |
23966672 |
T |
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| Q |
101 |
acatatattttgaatttggagtgagctgttcgccctccaggtaacaaaagagaagcaataccacttgttgcaacagttagaacaattttactctgactcc |
200 |
Q |
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| T |
23966673 |
acaggtattttgaatttggagtaagcagttcgccctccaggtaacaaaagagaagcaataccacttgttgcaacagttagaacaattttaccctgactcc |
23966772 |
T |
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| Q |
201 |
tcaatgcagcagctaaagttgtccacataaatgtttt |
237 |
Q |
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| T |
23966773 |
tcaatgcagcagctaaagttgtccacataaatgtttt |
23966809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 26226725 - 26226489
Alignment:
| Q |
1 |
cattggtgcctcatcccatatgatcaagtttgtaacttttaacagttttgcaagatcgttattaccatcaatgttacatgttgagttttcaaatgaagac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| | |
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| T |
26226725 |
cattggtgcctcatcccatatgatcaagtttgtaacttttaacagttttgcaagatcgctatcaccatcaatgttacatgttgagttttcaaatgaaggc |
26226626 |
T |
|
| Q |
101 |
acatatattttgaatttggagtgagctgttcgccctccaggtaacaaaagagaagcaataccacttgttgcaacagttagaacaattttactctgactcc |
200 |
Q |
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||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
26226625 |
acaggtattttgaattttgagtgagcagttcgccctccaggtaacaaaagagaagcaataccacttgttgcaacagttagaacaattttaccctgactcc |
26226526 |
T |
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| Q |
201 |
tcaatgcagcagctaaagttgtccacataaatgtttt |
237 |
Q |
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|||||| |||||||||||||||||||||||||||||| |
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| T |
26226525 |
tcaatgaagcagctaaagttgtccacataaatgtttt |
26226489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 33546291 - 33546055
Alignment:
| Q |
1 |
cattggtgcctcatcccatatgatcaagtttgtaacttttaacagttttgcaagatcgttattaccatcaatgttacatgttgagttttcaaatgaagac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| | |
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| T |
33546291 |
cattggtgcctcatcccatatgatcaagtttgtaacttttaacagttttgcaagatcgctatcaccatcaatgttacatgttgagttttcaaatgaaggc |
33546192 |
T |
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| Q |
101 |
acatatattttgaatttggagtgagctgttcgccctccaggtaacaaaagagaagcaataccacttgttgcaacagttagaacaattttactctgactcc |
200 |
Q |
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||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33546191 |
acaggtattttgaattttgagtgagcagttcgccctccaggtaacaaaagagaagcaataccacttgttgcaacagttagaacaattttaccctgactcc |
33546092 |
T |
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| Q |
201 |
tcaatgcagcagctaaagttgtccacataaatgtttt |
237 |
Q |
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|||||| |||||||||||||||||||||||||||||| |
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| T |
33546091 |
tcaatgaagcagctaaagttgtccacataaatgtttt |
33546055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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