View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7064_low_12 (Length: 229)

Name: NF7064_low_12
Description: NF7064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7064_low_12
NF7064_low_12
[»] chr8 (4 HSPs)
chr8 (3-212)||(2320054-2320263)
chr8 (37-147)||(38544230-38544340)
chr8 (1-43)||(9484263-9484305)
chr8 (3-46)||(10382031-10382074)
[»] chr4 (2 HSPs)
chr4 (3-212)||(16990438-16990647)
chr4 (3-43)||(52720597-52720637)
[»] chr3 (10 HSPs)
chr3 (3-212)||(37241953-37242162)
chr3 (3-212)||(1258665-1258874)
chr3 (3-212)||(34873538-34873735)
chr3 (3-95)||(13809927-13810019)
chr3 (3-46)||(44445490-44445533)
chr3 (1-46)||(41638478-41638523)
chr3 (11-46)||(34872973-34873008)
chr3 (11-46)||(37242999-37243034)
chr3 (11-44)||(1259713-1259746)
chr3 (3-43)||(46187148-46187188)
[»] chr7 (3 HSPs)
chr7 (3-212)||(31234116-31234325)
chr7 (3-46)||(41236789-41236832)
chr7 (11-43)||(31235166-31235198)
[»] chr6 (2 HSPs)
chr6 (3-149)||(18246177-18246323)
chr6 (3-45)||(32079797-32079839)
[»] chr5 (3 HSPs)
chr5 (34-145)||(39087407-39087518)
chr5 (3-46)||(3135923-3135966)
chr5 (4-44)||(27645836-27645876)
[»] chr2 (2 HSPs)
chr2 (41-145)||(20040174-20040276)
chr2 (3-45)||(16043374-16043416)
[»] chr1 (4 HSPs)
chr1 (3-46)||(41465236-41465279)
chr1 (11-46)||(41466221-41466256)
chr1 (11-46)||(45320464-45320499)
chr1 (3-43)||(33284504-33284544)
[»] scaffold0175 (1 HSPs)
scaffold0175 (1-49)||(26261-26309)


Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 3 - 212
Target Start/End: Complemental strand, 2320263 - 2320054
Alignment:
Q  3 ggtggcatttcacatgggaaggtataaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcc 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2320263 ggtggcatttcacatgggaaggtataaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcc 2320164  T
Q  103 cacatctgatctcaatagcttcactttccaaacttttctcatcttgctcacagctttgtggccgtctccctccaggctccatctcccacaaccagcaacc 202  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2320163 cacatctgatctcaatagcttcactttccaaatttttctcatcttgctcccagctttgtggccgtctccctccaggctccatctcccacaaccagcaacc 2320064  T
Q  203 accttcaaag 212  Q
    ||||||||||    
T  2320063 accttcaaag 2320054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 147
Target Start/End: Complemental strand, 38544340 - 38544230
Alignment:
Q  37 ccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctgatctcaatagcttcactttccaaact 136  Q
    ||||||||||  ||||||||| |||||||||||||| || |||||||||| ||||||||| |||| |||| || ||   ||| | ||| | |||||||||    
T  38544340 ccaccatgggaaacacaagatcaatggttagattgtacacttctattaaatcttatcatgctctctcacacctaattctaatggtttctcattccaaact 38544241  T
Q  137 tttctcatctt 147  Q
    |||||||||||    
T  38544240 tttctcatctt 38544230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 9484263 - 9484305
Alignment:
Q  1 tgggtggcatttcacatgggaaggtataaaaccttcccaccat 43  Q
    ||||||||||||||||| |||||||||||||| ||||||||||    
T  9484263 tgggtggcatttcacattggaaggtataaaacattcccaccat 9484305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 10382031 - 10382074
Alignment:
Q  3 ggtggcatttcacatgggaaggtataaaaccttcccaccatggg 46  Q
    |||||||||||||||| ||||||||||||| ||||||| |||||    
T  10382031 ggtggcatttcacatgcgaaggtataaaacattcccactatggg 10382074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 3 - 212
Target Start/End: Complemental strand, 16990647 - 16990438
Alignment:
Q  3 ggtggcatttcacatgggaaggtataaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcc 102  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16990647 ggtggcatttcatatgggaaggtataaaacctttccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcc 16990548  T
Q  103 cacatctgatctcaatagcttcactttccaaacttttctcatcttgctcacagctttgtggccgtctccctccaggctccatctcccacaaccagcaacc 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16990547 cacatctgatctcaatagcttcactttccaaacttttctcatcttgctcccagctttgtggccgtctccctccaggctccatctcccacaaccagcaacc 16990448  T
Q  203 accttcaaag 212  Q
    ||||||||||    
T  16990447 accttcaaag 16990438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 52720597 - 52720637
Alignment:
Q  3 ggtggcatttcacatgggaaggtataaaaccttcccaccat 43  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  52720597 ggtggcatttcacatgggaaggtataaaacattcccaccat 52720637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 3 - 212
Target Start/End: Original strand, 37241953 - 37242162
Alignment:
Q  3 ggtggcatttcacatgggaaggtataaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcc 102  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37241953 ggtggcatttcatatgggaaggtataaaaccttcctaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcc 37242052  T
Q  103 cacatctgatctcaatagcttcactttccaaacttttctcatcttgctcacagctttgtggccgtctccctccaggctccatctcccacaaccagcaacc 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37242053 cacatctgatctcaatagcttcactttccaaacttttctcatcttgctcccagctttgtggccgtctccctccaggctccatctcccacaaccagcaacc 37242152  T
Q  203 accttcaaag 212  Q
    ||||||||||    
T  37242153 accttcaaag 37242162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 3 - 212
Target Start/End: Original strand, 1258665 - 1258874
Alignment:
Q  3 ggtggcatttcacatgggaaggtataaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcc 102  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1258665 ggtggcatttcacatgggaaggtataaaaccttcccaccatggatcacacaagataaatggttagattatgcatttctattaaagcttatcatgttctcc 1258764  T
Q  103 cacatctgatctcaatagcttcactttccaaacttttctcatcttgctcacagctttgtggccgtctccctccaggctccatctcccacaaccagcaacc 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1258765 cacatctgatctcaatagcttcactttccaaacttttctcatcttgctcccagctttgtggccgtctccctctaggctccatctcccacaaccagcaacc 1258864  T
Q  203 accttcaaag 212  Q
    ||||||||||    
T  1258865 accttcaaag 1258874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 3 - 212
Target Start/End: Complemental strand, 34873735 - 34873538
Alignment:
Q  3 ggtggcatttcacatgggaaggtataaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcc 102  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||            ||||||||||||||||||||||||||||||||    
T  34873735 ggtggcatttcacatgggaaggtataaaaccttcccaccatggatcacacaagata------------gtgcatttctattaaagcttatcatgttctcc 34873648  T
Q  103 cacatctgatctcaatagcttcactttccaaacttttctcatcttgctcacagctttgtggccgtctccctccaggctccatctcccacaaccagcaacc 202  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34873647 cacatctgatctcaatagcttcactttccaaacttttgtcatcttgctcccagctttgtggccgtctccctccaggctccatctcccacaaccagcaacc 34873548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 3 - 95
Target Start/End: Original strand, 13809927 - 13810019
Alignment:
Q  3 ggtggcatttcacatgggaaggtataaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcat 95  Q
    |||| ||||| | ||||||| | ||||||| || |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  13809927 ggtgacatttaatatgggaaaggataaaacttttccaccatgggtcacacaagataaatggttacattgtgcacttctattaaagcttatcat 13810019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 44445490 - 44445533
Alignment:
Q  3 ggtggcatttcacatgggaaggtataaaaccttcccaccatggg 46  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  44445490 ggtggcatttcacatgggaagatataaaaccttcccaccatggg 44445533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 41638478 - 41638523
Alignment:
Q  1 tgggtggcatttcacatgggaaggtataaaaccttcccaccatggg 46  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||    
T  41638478 tgggtggcatttcacatgggaaggtgtaaaaccttcccatcatggg 41638523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 46
Target Start/End: Original strand, 34872973 - 34873008
Alignment:
Q  11 ttcacatgggaaggtataaaaccttcccaccatggg 46  Q
    ||||||||||||||||||||||||||||||||||||    
T  34872973 ttcacatgggaaggtataaaaccttcccaccatggg 34873008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 46
Target Start/End: Complemental strand, 37243034 - 37242999
Alignment:
Q  11 ttcacatgggaaggtataaaaccttcccaccatggg 46  Q
    ||||||||||||||||||||||||||||||||||||    
T  37243034 ttcacatgggaaggtataaaaccttcccaccatggg 37242999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 1259746 - 1259713
Alignment:
Q  11 ttcacatgggaaggtataaaaccttcccaccatg 44  Q
    ||||||||||||||||||||||||||||||||||    
T  1259746 ttcacatgggaaggtataaaaccttcccaccatg 1259713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 46187148 - 46187188
Alignment:
Q  3 ggtggcatttcacatgggaaggtataaaaccttcccaccat 43  Q
    |||||||||||||||||||| || |||||| ||||||||||    
T  46187148 ggtggcatttcacatgggaaagtgtaaaactttcccaccat 46187188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 3 - 212
Target Start/End: Original strand, 31234116 - 31234325
Alignment:
Q  3 ggtggcatttcacatgggaaggtataaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcc 102  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  31234116 ggtggcatttcatatgggaaggtataaaaccttcccaccatggatcacacaagataaatgattagattgtacatttctattaaagcttatcatgttctcc 31234215  T
Q  103 cacatctgatctcaatagcttcactttccaaacttttctcatcttgctcacagctttgtggccgtctccctccaggctccatctcccacaaccagcaacc 202  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31234216 tacatctgatctcaatagcttcactttccaaacttttctcatcttgctcccagctttgtggtcgtctccctccaggctccatctcccacaaccagcaacc 31234315  T
Q  203 accttcaaag 212  Q
    ||||||||||    
T  31234316 accttcaaag 31234325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 41236789 - 41236832
Alignment:
Q  3 ggtggcatttcacatgggaaggtataaaaccttcccaccatggg 46  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  41236789 ggtggcatttcacatgggaaggtgtaaaaccttcccaccatggg 41236832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 31235198 - 31235166
Alignment:
Q  11 ttcacatgggaaggtataaaaccttcccaccat 43  Q
    |||||||||||||||||||||||||||||||||    
T  31235198 ttcacatgggaaggtataaaaccttcccaccat 31235166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 3 - 149
Target Start/End: Original strand, 18246177 - 18246323
Alignment:
Q  3 ggtggcatttcacatgggaaggtataaaaccttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcc 102  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18246177 ggtggcatttcacatgggaaggtataaaactttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcc 18246276  T
Q  103 cacatctgatctcaatagcttcactttccaaacttttctcatcttgc 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  18246277 cacatctgatctcaatagcttcactttccaaacttttctcatcttgc 18246323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 32079839 - 32079797
Alignment:
Q  3 ggtggcatttcacatgggaaggtataaaaccttcccaccatgg 45  Q
    |||||||||||||||||||| || |||||| ||||||||||||    
T  32079839 ggtggcatttcacatgggaaagtctaaaactttcccaccatgg 32079797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 34 - 145
Target Start/End: Complemental strand, 39087518 - 39087407
Alignment:
Q  34 ttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctgatctcaatagcttcactttccaa 133  Q
    |||||||||| | ||||| || ||||||||||||||| ||||||||||| ||| ||||||||||||||||||| || |||| ||| ||||| ||||||||    
T  39087518 ttcccaccatagatcacataaaataaatggttagattttgcatttctataaaaccttatcatgttctcccacacctaatcttaattgcttctctttccaa 39087419  T
Q  134 acttttctcatc 145  Q
    ||||||||||||    
T  39087418 acttttctcatc 39087407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 3135923 - 3135966
Alignment:
Q  3 ggtggcatttcacatgggaaggtataaaaccttcccaccatggg 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  3135923 ggtggcatttcacatgggaaggtataaaaccttcccaccatggg 3135966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 27645836 - 27645876
Alignment:
Q  4 gtggcatttcacatgggaaggtataaaaccttcccaccatg 44  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  27645836 gtggcatttcacatgggaaggtgtaaaaccttcccaccatg 27645876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 41 - 145
Target Start/End: Complemental strand, 20040276 - 20040174
Alignment:
Q  41 catgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctgatctcaatagcttcactttccaaacttttc 140  Q
    ||||| ||||| | ||||||||||||||||||||| |||||||||| ||||||||||||||||||| || |||| ||| ||||  || ||||||||||||    
T  20040276 catggatcacataggataaatggttagattgtgcacttctattaaatcttatcatgttctcccacacctaatcttaatggctt--ctctccaaacttttc 20040179  T
Q  141 tcatc 145  Q
    |||||    
T  20040178 tcatc 20040174  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 16043374 - 16043416
Alignment:
Q  3 ggtggcatttcacatgggaaggtataaaaccttcccaccatgg 45  Q
    |||||||||||||||||||||||||||| | ||||||||||||    
T  16043374 ggtggcatttcacatgggaaggtataaagctttcccaccatgg 16043416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 41465236 - 41465279
Alignment:
Q  3 ggtggcatttcacatgggaaggtataaaaccttcccaccatggg 46  Q
    |||||| |||||||||||||||| ||||||||||||||||||||    
T  41465236 ggtggcttttcacatgggaaggtgtaaaaccttcccaccatggg 41465279  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 46
Target Start/End: Original strand, 41466221 - 41466256
Alignment:
Q  11 ttcacatgggaaggtataaaaccttcccaccatggg 46  Q
    ||||||||||||||||||||||||||||||||||||    
T  41466221 ttcacatgggaaggtataaaaccttcccaccatggg 41466256  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 46
Target Start/End: Original strand, 45320464 - 45320499
Alignment:
Q  11 ttcacatgggaaggtataaaaccttcccaccatggg 46  Q
    ||||||||||||||||||||||||||||||||||||    
T  45320464 ttcacatgggaaggtataaaaccttcccaccatggg 45320499  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 33284544 - 33284504
Alignment:
Q  3 ggtggcatttcacatgggaaggtataaaaccttcccaccat 43  Q
    |||||||||||||||||||  ||||||||||||||||||||    
T  33284544 ggtggcatttcacatgggagagtataaaaccttcccaccat 33284504  T

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Target: scaffold0175 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 26261 - 26309
Alignment:
Q  1 tgggtggcatttcacatgggaaggtataaaaccttcccaccatgggtca 49  Q
    |||||||||||| ||||||||| || |||||| || |||||||||||||    
T  26261 tgggtggcatttaacatgggaaagtgtaaaacttttccaccatgggtca 26309  T

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